Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0004411

Physical Location & Seq

Genomic Coordinates Forward (+)

43529768 .. 43534391

Gene Structure 4624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG206900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2724 bp

ATGAGTACAATTGGGGGTAAGTGGGATGATGATGAGTGCTCTGTCATTGGAGACAAAGGGGATATCGGGTTCATCGATTACAAAGATGACAAATCGGTTTGTAGTTACAACCCAGCTGAAGAGGGTCCGATTGTTATTTCAGTCCCATTCCCTCTTGTGGGAGGAAAGCAAGGTCAAAAGCCTCAATCAGTAGTTGTAGGAGAAACAGTTTCGGATAAAATAACAATTGAGAACACCACCCGTAAGCCAGTGGAGCTATGGGGTGTTAAAATTTATGCCTCAACTCCAGAGGACTCTTTCACACTTTCTCTGATGGAGCCTCCAAAGAAAGACTCTGGTGTAGAAGCCATTAGAGCCTTCCTCGAGTCTGCTTCCCTCGAGGACAGAGTGCTGCAACCAGGAGACACTTTGACTGTGTGGCTGTCTTGCAAGCCCAAGGAAATTGGTATGCACACCAGCGTTGTGCAGTTTGATTTCGAGGATAATCAGATTGAACGTGCTGTTTTTCTCTTGGCTGATGACAAGATCTCCCAATCTCTGGCCTCAACAAGACCATTCGAAAGACGCACTAAAAAGAAACCAATTGTTGTGGCTTCCTATCATGTGGCTGTAAGCCCTAGTAGAAAAACAAAACGCCAACCCTACAAAAATAGGCTTCCGCGATATGACATTCCAAAGGAACTTAGGGATTACCTCTGGAACGGGCACGATCCTGAATGTGTAACAGAAGGTCTTAAGAGGCGGAACTATGCTGATCACTTCAAGACTTTACTGATGATGGAGGAAATACAGTTAGAGGACAGCATGAGAAGTTATGATATGGAATATGTTAGTTTGAGGAGGAGGGGATATCATTATTTGTCCCTTGAAGTCCCAGGGCTTGCTGAGAGAAGGCCTTCACTTGTCCAAGGGGATCATGTTTTCGCCAAGCTTTCTGAGTATGCAGATGACACAACACTTGATCCATACCAGGGTTTCATTCACCATGTTGAGGCTGATGAAGTTTACTTGAAGTTTGCGCAAGATTTTCACAGAGACCACACAGACGGTAATCTTTATAATGTGCAATTCACATATAATCGAGTTTCCATGAGAAGGTTATATCAAGCGACTGATGCTGCTGCAGAGTTAGACAGAGGGTTCCTATTTCCATCTGAGTCCCCTCAAAGATGGATTAATGCCCCAAAACTGTACCCTATACCTTCTTGTAGACTTAATGAAGAGCAGATGCGTGCAGTTGAGATGATCCTTGGCTGCAAAGGAGGACCACCTTATGTGATTCATGGACCTCCTGGCACAGGCAAGACAATGACAATAGTGGAAGCAATCCTCCAACTCTACAAAAGTCAAGCAAAAGCTCGAATTCTTGTTTGTGCACCTTCAAATAGTGCAGCAGACCACATACTGGAGAAACTCCTCAATGAAAAGGCTGACGTAGTAGTTAAAGAGCATGAAATATTCAGGTTTAATGCACCTACCCGTCCTTATGAAGATATCAAGCCTGAATATATTAAATTTTGCTGCTCCGAGGACAATATCTTCGACTGTCCTCCACCCAAAGCCCTCAGGCGCTATAGGATCATCATATCAACCTATATGAGTGCCGCTCTTCTTTATGCAGAAGGTATCGAAAAAGGCCACTTCTCTCATATTTTCTTGGATGAGGCAGGACAAGCTTCGGAACCAGAAACCATGATCCCAGTAGCCAGTCTGCATGAGAGGAATACAGTTGTTGTTCTTGCTGGAGACCCTATGCAATTAGGGCCAATCATAAACTCCAAGAGAGCAGAAGATTACTATTTGGGGATATCATACTTGGAGAGGATGTTCGACTGTGAATTTTATAGAAATGAAGATAACAGTTATGTGACAAAGTTGGTTAGAAACTACAGATGTCACCCACACATTTTGCACCTCCCCAATGAGTTATTCTATGGAGGAGAGTTGATTGCTTGTAAAGATGACTCAGTTCCCATCATTGCAAGGCTGGACCTTCTTCCCAATAAGGACTTTCCAGTGGTTTTCTTTGGCATTCAAGGTTGTGATGAGAGGGAAGGAAATAATCCATCATGGTTTAACCGGACTGAGGCTAGTAAGGTAGTGGAGGTCACTAAGAGATTGACTGCAGGAAAGAACCTGAGTGAAGAAGATATTGGGGTTATAACTCCTTACCGACAGCAAGTGCTCAAACTGAAGAAAGCTTTTGAAGATTTGGACATGCCTGACATCAAGGTTGGAAGTGTCGAGCAGTTTCAGGGACAGGAGAGGGAAGTTATCATAATATCAACTGTGCGATCAACAATCAAGCACAATGAATTTGACAGAACATACTGTTTGGGATTTCTGAGCAATCCAAAACGGTTTAATGTGGCTATTACTCGTGCCAAATCTTTGCTGATTATAATTGGGAACCCGCATATTATCAGCAAGGATCCCAACTGGAATAAGCTTCTGTGGCGCTGTGTAGACAACAATTCCTATCAGGGTTGTAATCTCCCTGTCAGGCAGGAGGAATTTTCTTATGAGAACCCAACACAGGAAGATAACTGGGACAACAATGAAGAAAACGCTCAGTTCTCTAGAACTGATTCGTGGGTTCAAGGGTCGTGGGAAGCAGAAGCTCCGCAACCTTTCCAAAACGGAGATGGAGCTGAACAGTTGCTGGAAACAGAAGATCCCCAGCCTGTCGTTGATGAATCTGAATGGTCTGATGGCTGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004386 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0031047 GO:0035194 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0098542 GO:0098586 GO:0140098

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

907

Amino Acids

103.59

Weight (kDa)

5.27

Isoelectric Point (pI)

50.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOV-10_beta-barrel	PF21634	272 - 357	7.4e-31	Helicase MOV-10, beta-barrel domain
ResIII	PF04851	403 - 563	2.4e-08	Type III restriction enzyme, res subunit
AAA_11	PF13086	405 - 493	3.2e-20	AAA domain
AAA_30	PF13604	405 - 592	3.1e-13	AAA domain
AAA_19	PF13245	423 - 589	3.5e-09	AAA domain
AAA_11	PF13086	520 - 594	7.2e-12	AAA domain
AAA_12	PF13087	604 - 805	4e-50	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05460 AT1G05460
fragaria_vesca	FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972
malus_domestica	MD13G1196500.v1.1
prunus_persica	Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1
pyrus_communis	pycom13g16860
rosa_chinensis	RchiOBHm_Chr4g0415581
rosa_laevigata	RLG00000008062
rosa_multiflora	Rmu_sc0004599.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359390
rosa_rugosa	Rorug04G0134800 Rorug04G0134900 Rorug04G0135000 Rorug04G0135100 Rorug04G0135200 Rorug04G0135300
rosa_samantha	Rh4AG196200 Rh4BG194900 Rh4CG206900 Rh4DG193800
rosa_wichuraiana	Rw4G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1059, 2162, 2402
AbsI	CCTCGAGG	1 cut(s)	377
Acc16I	TGCGCA	1 cut(s)	1020
AccB7I	CCANNNNNTGG	2 cut(s)	538, 1405
AccBSI	CCGCTC	1 cut(s)	1607
AccI	GTMKAC	2 cut(s)	1210, 2466
AccII	CGCG	1 cut(s)	661
AciI	CCGC	5 cut(s)	659, 742, 1605, 2414, 2624
AclWI	GGATC	9 cut(s)	704, 921, 956, 1240, 1586, 1690, 2426, 2439, 2669
AcsI	RAATTY	6 cut(s)	270, 1362, 1514, 1838, 2315, 2513
AcuI	CTGAAG	2 cut(s)	138, 2213
AfaI	GTAC	2 cut(s)	7, 1193
AflII	CTTAAG	1 cut(s)	734
AgsI	TTSAA	8 cut(s)	494, 763, 869, 1012, 1383, 2036, 2207, 2600
AjnI	CCWGG	4 cut(s)	397, 874, 969, 1291
AjuI	GAANNNNNNNTTGG	4 cut(s)	1913, 1945, 2136, 2168
AloI	GAACNNNNNNTCC	4 cut(s)	53, 85, 1811, 1843
AluBI	AGCT	9 cut(s)	116, 256, 931, 1358, 1676, 2201, 2449, 2621, 2651
AluI	AGCT	9 cut(s)	116, 256, 931, 1358, 1676, 2201, 2449, 2621, 2651
Alw21I	GWGCWC	3 cut(s)	41, 1378, 2187
Alw26I	GTCTC	4 cut(s)	45, 396, 1029, 1740
Alw44I	GTGCAC	1 cut(s)	1374
AlwI	GGATC	9 cut(s)	704, 921, 956, 1240, 1586, 1690, 2426, 2439, 2669
AlwNI	CAGNNNCTG	1 cut(s)	2662
Ama87I	CYCGRG	2 cut(s)	362, 377
AoxI	GGCC	4 cut(s)	540, 893, 1636, 1763
ApaLI	GTGCAC	1 cut(s)	1374
ApeKI	GCWGC	6 cut(s)	391, 1118, 1121, 1254, 1391, 1521
ApoI	RAATTY	6 cut(s)	270, 1362, 1514, 1838, 2315, 2513
ArsI	GACNNNNNNTTYG	2 cut(s)	1523, 1555
AseI	ATTAAT	1 cut(s)	1176
Asp700I	GAANNNNTTC	2 cut(s)	895, 2587
AspLEI	GCGC	3 cut(s)	1021, 1572, 2460
AspS9I	GGNCC	5 cut(s)	125, 1265, 1286, 1763, 1990
AsuHPI	GGTGA	2 cut(s)	974, 1889
AsuII	TTCGAA	1 cut(s)	558
AvaI	CYCGRG	2 cut(s)	362, 377
AvaII	GGWCC	4 cut(s)	125, 1265, 1286, 1990
AxyI	CCTNAGG	1 cut(s)	1565
BaeGI	GKGCMC	2 cut(s)	708, 1378
BamHI	GGATCC	1 cut(s)	2431
BauI	CACGAG	1 cut(s)	2379
Bbv12I	GWGCWC	3 cut(s)	41, 1378, 2187
BbvI	GCAGC	6 cut(s)	378, 1105, 1108, 1241, 1403, 1508
BccI	CCATC	8 cut(s)	307, 772, 1159, 1164, 1982, 2074, 2639, 2705
BciT130I	CCWGG	4 cut(s)	399, 876, 971, 1293
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	4 cut(s)	45, 396, 1029, 1740
BfaI	CTAG	3 cut(s)	618, 2091, 2580
BfmI	CTRYAG	4 cut(s)	1122, 1573, 1888, 2124
BfoI	RGCGCY	2 cut(s)	1573, 2461
BfrI	CTTAAG	1 cut(s)	734
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	7 cut(s)	392, 1119, 1122, 1255, 1392, 1522, 1605
BlsI	GCNGC	7 cut(s)	393, 1120, 1123, 1256, 1393, 1523, 1606
Bme1390I	CCNGG	4 cut(s)	399, 876, 971, 1293
Bme18I	GGWCC	4 cut(s)	125, 1265, 1286, 1990
BmeT110I	CYCGRG	2 cut(s)	362, 377
BmgT120I	GGNCC	5 cut(s)	125, 1265, 1286, 1763, 1990
BmiI	GGNNCC	6 cut(s)	126, 318, 1142, 1683, 2411, 2433
BmrFI	CCNGG	4 cut(s)	399, 876, 971, 1293
BmrI	ACTGGG	2 cut(s)	1694, 2557
BmsI	GCATC	2 cut(s)	1105, 1218
BmuI	ACTGGG	2 cut(s)	1694, 2557
BplI	GAGNNNNNCTC	4 cut(s)	345, 377, 1591, 1623
BpmI	CTGGAG	3 cut(s)	270, 1427, 1764
Bpu14I	TTCGAA	1 cut(s)	558
Bsa29I	ATCGAT	1 cut(s)	75
BsaI	GGTCTC	2 cut(s)	1029, 1740
BsaJI	CCNNGG	7 cut(s)	435, 874, 875, 907, 970, 1249, 1527
BsaWI	WCCGGW	1 cut(s)	2079
BsaXI	ACNNNNNCTCC	6 cut(s)	192, 222, 512, 542, 1811, 1841
Bse1I	ACTGG	7 cut(s)	248, 1410, 1700, 1707, 2015, 2444, 2552
Bse21I	CCTNAGG	1 cut(s)	1565
Bse3DI	GCAATG	1 cut(s)	1977
BseBI	CCWGG	4 cut(s)	399, 876, 971, 1293
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	7 cut(s)	435, 874, 875, 907, 970, 1249, 1527
BseGI	GGATG	3 cut(s)	31, 1666, 1830
BseMI	GCAATG	1 cut(s)	1977
BseMII	CTCAG	9 cut(s)	876, 927, 1146, 1579, 1980, 2076, 2129, 2336, 2585
BseNI	ACTGG	7 cut(s)	248, 1410, 1700, 1707, 2015, 2444, 2552
BseRI	GAGGAG	4 cut(s)	853, 856, 1406, 1953
BseSI	GKGCMC	2 cut(s)	708, 1378
BseXI	GCAGC	6 cut(s)	378, 1105, 1108, 1241, 1403, 1508
BseYI	CCCAGC	2 cut(s)	112, 2679
BsgI	GTGCAG	3 cut(s)	485, 1254, 1410
Bsh1236I	CGCG	1 cut(s)	661
BshFI	GGCC	4 cut(s)	542, 895, 1638, 1765
BshVI	ATCGAT	1 cut(s)	75
BsiHKAI	GWGCWC	3 cut(s)	41, 1378, 2187
BsiHKCI	CYCGRG	2 cut(s)	362, 377
BsiSI	CCGG	1 cut(s)	2080
BslFI	GGGAC	6 cut(s)	128, 847, 857, 1144, 2271, 2564
BsmAI	GTCTC	4 cut(s)	45, 396, 1029, 1740
BsmFI	GGGAC	6 cut(s)	128, 847, 857, 1144, 2271, 2564
BsmI	GAATGC	1 cut(s)	2031
BsnI	GGCC	4 cut(s)	542, 895, 1638, 1765
Bso31I	GGTCTC	2 cut(s)	1029, 1740
BsoBI	CYCGRG	2 cut(s)	362, 377
Bsp119I	TTCGAA	1 cut(s)	558
Bsp1286I	GDGCHC	4 cut(s)	41, 708, 1378, 2187
BspACI	CCGC	5 cut(s)	659, 742, 1605, 2414, 2624
BspANI	GGCC	4 cut(s)	542, 895, 1638, 1765
BspCNI	CTCAG	9 cut(s)	877, 928, 1147, 1578, 1979, 2077, 2130, 2337, 2584
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	661
BspLI	GGNNCC	6 cut(s)	126, 318, 1142, 1683, 2411, 2433
BspMAI	CTGCAG	2 cut(s)	1126, 2128
BspPI	GGATC	9 cut(s)	704, 921, 956, 1240, 1586, 1690, 2426, 2439, 2669
BspQI	GCTCTTC	2 cut(s)	1215, 1614
BspT104I	TTCGAA	1 cut(s)	558
BspTI	CTTAAG	1 cut(s)	734
BspTNI	GGTCTC	2 cut(s)	1029, 1740
BsrBI	CCGCTC	1 cut(s)	1607
BsrDI	GCAATG	1 cut(s)	1977
BsrI	ACTGG	7 cut(s)	248, 1410, 1700, 1707, 2015, 2444, 2552
BssECI	CCNNGG	7 cut(s)	435, 874, 875, 907, 970, 1249, 1527
BssSI	CACGAG	1 cut(s)	2379
BssT1I	CCWWGG	3 cut(s)	435, 907, 1249
Bst2BI	CACGAG	1 cut(s)	2379
Bst2UI	CCWGG	4 cut(s)	399, 876, 971, 1293
Bst6I	CTCTTC	3 cut(s)	114, 1215, 1614
BstAFI	CTTAAG	1 cut(s)	734
BstBI	TTCGAA	1 cut(s)	558
BstC8I	GCNNGC	3 cut(s)	431, 882, 1233
BstENI	CCTNNNNNAGG	1 cut(s)	1296
BstF5I	GGATG	3 cut(s)	31, 1666, 1830
BstFNI	CGCG	1 cut(s)	661
BstH2I	RGCGCY	2 cut(s)	1573, 2461
BstHHI	GCGC	3 cut(s)	1021, 1572, 2460
BstMAI	GTCTC	4 cut(s)	45, 396, 1029, 1740
BstMWI	GCNNNNNNNGC	6 cut(s)	253, 353, 1115, 1673, 1762, 2455
BstNI	CCWGG	4 cut(s)	399, 876, 971, 1293
BstNSI	RCATGY	1 cut(s)	2221
BstSCI	CCNGG	4 cut(s)	397, 874, 969, 1291
BstSFI	CTRYAG	4 cut(s)	1122, 1573, 1888, 2124
BstSLI	GKGCMC	2 cut(s)	708, 1378
BstUI	CGCG	1 cut(s)	661
BstV1I	GCAGC	6 cut(s)	378, 1105, 1108, 1241, 1403, 1508
BstX2I	RGATCY	3 cut(s)	525, 2431, 2674
BstYI	RGATCY	3 cut(s)	525, 2431, 2674
Bsu15I	ATCGAT	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	1565
BsuRI	GGCC	4 cut(s)	542, 895, 1638, 1765
BsuTUI	ATCGAT	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	31, 1666, 1830
BtsIMutI	CAGTG	2 cut(s)	255, 2022
Cac8I	GCNNGC	3 cut(s)	431, 882, 1233
CaiI	CAGNNNCTG	1 cut(s)	2662
CfoI	GCGC	3 cut(s)	1021, 1572, 2460
Cfr13I	GGNCC	5 cut(s)	125, 1265, 1286, 1763, 1990
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	1 cut(s)	573
Csp6I	GTAC	2 cut(s)	6, 1192
CspCI	CAANNNNNGTGG	6 cut(s)	570, 605, 1890, 1925, 2588, 2623
CviQI	GTAC	2 cut(s)	6, 1192
Eam1104I	CTCTTC	3 cut(s)	114, 1215, 1614
EarI	CTCTTC	3 cut(s)	114, 1215, 1614
EciI	GGCGGA	1 cut(s)	757
Eco130I	CCWWGG	3 cut(s)	435, 907, 1249
Eco147I	AGGCCT	1 cut(s)	895
Eco31I	GGTCTC	2 cut(s)	1029, 1740
Eco32I	GATATC	4 cut(s)	64, 851, 1495, 1809
Eco47I	GGWCC	4 cut(s)	125, 1265, 1286, 1990
Eco57I	CTGAAG	2 cut(s)	138, 2213
Eco81I	CCTNAGG	1 cut(s)	1565
Eco88I	CYCGRG	2 cut(s)	362, 377
EcoNI	CCTNNNNNAGG	1 cut(s)	1296
EcoRI	GAATTC	1 cut(s)	1362
EcoRII	CCWGG	4 cut(s)	397, 874, 969, 1291
EcoRV	GATATC	4 cut(s)	64, 851, 1495, 1809
EcoT14I	CCWWGG	3 cut(s)	435, 907, 1249
ErhI	CCWWGG	3 cut(s)	435, 907, 1249
FaqI	GGGAC	6 cut(s)	128, 847, 857, 1144, 2271, 2564
FauI	CCCGC	1 cut(s)	2421
FbaI	TGATCA	1 cut(s)	754
FblI	GTMKAC	2 cut(s)	1210, 2466
Fnu4HI	GCNGC	7 cut(s)	392, 1119, 1122, 1255, 1392, 1522, 1605
FokI	GGATG	3 cut(s)	38, 1673, 1837
Fsp4HI	GCNGC	7 cut(s)	392, 1119, 1122, 1255, 1392, 1522, 1605
FspBI	CTAG	3 cut(s)	618, 2091, 2580
FspI	TGCGCA	1 cut(s)	1020
GlaI	GCGC	3 cut(s)	1020, 1571, 2459
GluI	GCNGC	7 cut(s)	392, 1119, 1122, 1255, 1392, 1522, 1605
GsaI	CCCAGC	2 cut(s)	116, 2683
GsuI	CTGGAG	3 cut(s)	270, 1427, 1764
HaeII	RGCGCY	2 cut(s)	1573, 2461
HaeIII	GGCC	4 cut(s)	542, 895, 1638, 1765
HapII	CCGG	1 cut(s)	2080
HgaI	GACGC	1 cut(s)	573
HhaI	GCGC	3 cut(s)	1021, 1572, 2460
Hin6I	GCGC	3 cut(s)	1019, 1570, 2458
HinP1I	GCGC	3 cut(s)	1019, 1570, 2458
HindIII	AAGCTT	4 cut(s)	929, 1674, 2199, 2447
HinfI	GANTC	8 cut(s)	293, 332, 365, 1157, 1279, 1964, 2588, 2696
HpaII	CCGG	1 cut(s)	2080
HphI	GGTGA	2 cut(s)	974, 1889
Hpy166II	GTNNAC	4 cut(s)	1006, 1211, 1376, 2467
Hpy188III	TCNNGA	5 cut(s)	287, 697, 713, 763, 2580
Hpy8I	GTNNAC	4 cut(s)	1006, 1211, 1376, 2467
HpyCH4IV	ACGT	2 cut(s)	496, 1434
HpyF10VI	GCNNNNNNNGC	6 cut(s)	253, 353, 1115, 1673, 1762, 2455
HpySE526I	ACGT	2 cut(s)	496, 1434
HspAI	GCGC	3 cut(s)	1019, 1570, 2458
Ksp22I	TGATCA	1 cut(s)	754
LguI	GCTCTTC	2 cut(s)	1215, 1614
LmnI	GCTCC	5 cut(s)	253, 316, 1529, 2626, 2648
Lsp1109I	GCAGC	6 cut(s)	378, 1105, 1108, 1241, 1403, 1508
LweI	GCATC	2 cut(s)	1105, 1218
MaeI	CTAG	3 cut(s)	618, 2091, 2580
MaeII	ACGT	2 cut(s)	496, 1434
MaeIII	GTNAC	5 cut(s)	104, 721, 1867, 1895, 2107
MbiI	CCGCTC	1 cut(s)	1607
MfeI	CAATTG	3 cut(s)	9, 225, 582
MflI	RGATCY	3 cut(s)	525, 2431, 2674
MhlI	GDGCHC	4 cut(s)	41, 708, 1378, 2187
MlyI	GAGTC	5 cut(s)	287, 326, 374, 1166, 1958
MmeI	TCCRAC	2 cut(s)	1357, 2215
MroXI	GAANNNNTTC	2 cut(s)	895, 2587
MseI	TTAA	9 cut(s)	267, 735, 1176, 1215, 1443, 1467, 1512, 2076, 2364
MspA1I	CMGCKG	1 cut(s)	116
MspCI	CTTAAG	1 cut(s)	734
MspI	CCGG	1 cut(s)	2080
MspR9I	CCNGG	4 cut(s)	399, 876, 971, 1293
MunI	CAATTG	3 cut(s)	9, 225, 582
Mva1269I	GAATGC	1 cut(s)	2031
MvaI	CCWGG	4 cut(s)	399, 876, 971, 1293
MvnI	CGCG	1 cut(s)	661
MwoI	GCNNNNNNNGC	6 cut(s)	253, 353, 1115, 1673, 1762, 2455
NlaIV	GGNNCC	6 cut(s)	126, 318, 1142, 1683, 2411, 2433
NmuCI	GTSAC	3 cut(s)	1867, 1895, 2107
NsbI	TGCGCA	1 cut(s)	1020
NspI	RCATGY	1 cut(s)	2221
NspV	TTCGAA	1 cut(s)	558
PaeR7I	CTCGAG	2 cut(s)	362, 377
PasI	CCCWGGG	1 cut(s)	875
PceI	AGGCCT	1 cut(s)	895
PciSI	GCTCTTC	2 cut(s)	1215, 1614
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	2031
PdmI	GAANNNNTTC	2 cut(s)	895, 2587
PfeI	GAWTC	3 cut(s)	1279, 2588, 2696
PflMI	CCANNNNNTGG	2 cut(s)	538, 1405
PkrI	GCNGC	7 cut(s)	393, 1120, 1123, 1256, 1393, 1523, 1606
PleI	GAGTC	5 cut(s)	287, 326, 373, 1165, 1958
PpsI	GAGTC	5 cut(s)	287, 326, 373, 1165, 1958
PshBI	ATTAAT	1 cut(s)	1176
PsiI	TTATAA	3 cut(s)	1059, 2162, 2402
Psp6I	CCWGG	4 cut(s)	397, 874, 969, 1291
PspFI	CCCAGC	2 cut(s)	112, 2679
PspGI	CCWGG	4 cut(s)	397, 874, 969, 1291
PspN4I	GGNNCC	6 cut(s)	126, 318, 1142, 1683, 2411, 2433
PspPI	GGNCC	5 cut(s)	125, 1265, 1286, 1763, 1990
PspXI	VCTCGAGB	2 cut(s)	362, 377
PstI	CTGCAG	2 cut(s)	1126, 2128
PstNI	CAGNNNCTG	1 cut(s)	2662
PsuI	RGATCY	3 cut(s)	525, 2431, 2674
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	7, 1193
RsaNI	GTAC	2 cut(s)	6, 1192
SapI	GCTCTTC	2 cut(s)	1215, 1614
SaqAI	TTAA	9 cut(s)	267, 735, 1176, 1215, 1443, 1467, 1512, 2076, 2364
SatI	GCNGC	7 cut(s)	392, 1119, 1122, 1255, 1392, 1522, 1605
Sau96I	GGNCC	5 cut(s)	125, 1265, 1286, 1763, 1990
SchI	GAGTC	5 cut(s)	287, 326, 374, 1166, 1958
ScrFI	CCNGG	4 cut(s)	399, 876, 971, 1293
SduI	GDGCHC	4 cut(s)	41, 708, 1378, 2187
SfaNI	GCATC	2 cut(s)	1105, 1218
SfcI	CTRYAG	4 cut(s)	1122, 1573, 1888, 2124
Sfr274I	CTCGAG	2 cut(s)	362, 377
SfuI	TTCGAA	1 cut(s)	558
SinI	GGWCC	4 cut(s)	125, 1265, 1286, 1990
SlaI	CTCGAG	2 cut(s)	362, 377
SmlI	CTYRAG	3 cut(s)	362, 377, 734
SmoI	CTYRAG	3 cut(s)	362, 377, 734
SseBI	AGGCCT	1 cut(s)	895
SsiI	CCGC	5 cut(s)	659, 742, 1605, 2414, 2624
SspI	AATATT	1 cut(s)	1458
SspMI	CTAG	3 cut(s)	618, 2091, 2580
StuI	AGGCCT	1 cut(s)	895
StyD4I	CCNGG	4 cut(s)	397, 874, 969, 1291
StyI	CCWWGG	3 cut(s)	435, 907, 1249
TaiI	ACGT	2 cut(s)	499, 1437
TatI	WGTACW	1 cut(s)	5
TauI	GCSGC	1 cut(s)	1607
TfiI	GAWTC	3 cut(s)	1279, 2588, 2696
Tru1I	TTAA	9 cut(s)	267, 735, 1176, 1215, 1443, 1467, 1512, 2076, 2364
Tru9I	TTAA	9 cut(s)	267, 735, 1176, 1215, 1443, 1467, 1512, 2076, 2364
TscAI	CASTG	2 cut(s)	255, 2022
TseFI	GTSAC	3 cut(s)	1867, 1895, 2107
TseI	GCWGC	6 cut(s)	391, 1118, 1121, 1254, 1391, 1521
Tsp45I	GTSAC	3 cut(s)	1867, 1895, 2107
TspGWI	ACGGA	1 cut(s)	2655
TspRI	CASTG	2 cut(s)	255, 2022
Van91I	CCANNNNNTGG	2 cut(s)	538, 1405
Vha464I	CTTAAG	1 cut(s)	734
VneI	GTGCAC	1 cut(s)	1374
VpaK11BI	GGWCC	4 cut(s)	125, 1265, 1286, 1990
VspI	ATTAAT	1 cut(s)	1176
XagI	CCTNNNNNAGG	1 cut(s)	1296
XapI	RAATTY	6 cut(s)	270, 1362, 1514, 1838, 2315, 2513
XbaI	TCTAGA	1 cut(s)	2579
XceI	RCATGY	1 cut(s)	2221
XcmI	CCANNNNNNNNNTGG	2 cut(s)	255, 2642
XhoI	CTCGAG	2 cut(s)	362, 377
XmiI	GTMKAC	2 cut(s)	1210, 2466
XmnI	GAANNNNTTC	2 cut(s)	895, 2587
XspI	CTAG	3 cut(s)	618, 2091, 2580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.