Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004411

Physical Location & Seq

Genomic Coordinates Forward (+)

21757862 .. 21758617

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0134900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGACTCCACCAACTCTGCAACTGTTGGACCCACAAATCCAGCACTCTCCAGATCTACAAATTCAGCAACCTCTGGATCCACAAATCCAACAACGGATCGAGGATGAAGGAAGCAACACAGCAGCCGGGAGTAGTGCCATCACGCCAATCAGGCCGACCAGTATCCGGTGGGCTCCCACACCAGATCAACTAAGAATCCTCCAGGAGCTTTACTATGACAAGGCCTTTAAATACCCAACCCCAAAGAAAATTCAAGAGATCTGTCTCCATCTGAAACAGTATGGACAGGTTGAGGGCATGAACGTTTATTTTTGGTTCCAGAACCTCAGAGCTCGAGACAGACAGAAGATGAGGTTAATTCAGAACATTCGGGTTGGCGGATCTCTCGATCTCAACTTTGGATCCACTAGTTCTACTGATGATGGTGGGTTTATTGATGTCAATTTTGGGCCACGGGTTGACTGCAGTGTTGACCGGTATTCCTCCTCACCCTTCAACACTAATACTAATACTTACTCCTTTGGCACAAAAGAAGGACAAACTTTCATGGAACAGCGAGGGGAAGATCACCAGGAGATTGAAACTCTTCCTCTGTTCCCCATGCACGGTGAGGACATCTTTAGCGACCTAAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTGTTCCGGTGGCTCGGGCGGCTACAACGGTGGCTCTCACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGAAGCTGCTGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003724 GO:0003824 GO:0004386 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019222 GO:0031047 GO:0035194 GO:0035821 GO:0040029 GO:0043207 GO:0044003 GO:0044403 GO:0044419 GO:0045087 GO:0048519 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0098542 GO:0098586 GO:0140098

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_11 AAA_12

Protein Analysis

251

Amino Acids

27.92

Weight (kDa)

4.85

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	56 - 115	1.7e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004411)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05460 AT1G05460
fragaria_vesca	FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972 FvH4_4g15972
malus_domestica	MD13G1196500.v1.1
prunus_persica	Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1 Prupe.1G017300_v2.0.a1
pyrus_communis	pycom13g16860
rosa_chinensis	RchiOBHm_Chr4g0415581
rosa_laevigata	RLG00000008062
rosa_multiflora	Rmu_sc0004599.1_g000006
rosa_roxburghii	Rroxscaffold_5G00359390
rosa_rugosa	Rorug04G0134800 Rorug04G0134900 Rorug04G0135000 Rorug04G0135100 Rorug04G0135200 Rorug04G0135300
rosa_samantha	Rh4AG196200 Rh4BG194900 Rh4CG206900 Rh4DG193800
rosa_wichuraiana	Rw4G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	378, 654, 684
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	6 cut(s)	71, 84, 104, 388, 396, 409
AcsI	RAATTY	2 cut(s)	60, 249
AfiI	CCNNNNNNNGG	2 cut(s)	165, 605
AgeI	ACCGGT	1 cut(s)	474
AgsI	TTSAA	3 cut(s)	254, 496, 581
AhlI	ACTAGT	1 cut(s)	407
AjnI	CCWGG	2 cut(s)	201, 570
AluBI	AGCT	4 cut(s)	208, 332, 718, 740
AluI	AGCT	4 cut(s)	208, 332, 718, 740
Alw21I	GWGCWC	2 cut(s)	334, 720
Alw26I	GTCTC	2 cut(s)	269, 330
AlwI	GGATC	6 cut(s)	71, 84, 104, 388, 396, 409
Ama87I	CYCGRG	2 cut(s)	333, 679
AoxI	GGCC	3 cut(s)	152, 222, 449
ApeKI	GCWGC	2 cut(s)	122, 740
ApoI	RAATTY	2 cut(s)	60, 249
AsiGI	ACCGGT	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	28, 449
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	3 cut(s)	480, 560, 620
AvaI	CYCGRG	2 cut(s)	333, 679
AvaII	GGWCC	1 cut(s)	28
BamHI	GGATCC	2 cut(s)	76, 401
BanII	GRGCYC	3 cut(s)	175, 334, 720
Bbv12I	GWGCWC	2 cut(s)	334, 720
BbvI	GCAGC	2 cut(s)	134, 727
BccI	CCATC	4 cut(s)	146, 276, 416, 739
BciT130I	CCWGG	2 cut(s)	203, 572
BciVI	GTATCC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	269, 330
BcuI	ACTAGT	1 cut(s)	407
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	463
BfuI	GTATCC	1 cut(s)	173
BglI	GCCNNNNNGGC	1 cut(s)	151
BglII	AGATCT	2 cut(s)	52, 258
BisI	GCNGC	4 cut(s)	123, 655, 685, 741
BlpI	GCTNAGC	1 cut(s)	719
BlsI	GCNGC	4 cut(s)	124, 656, 686, 742
Bme1390I	CCNGG	3 cut(s)	127, 203, 572
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	2 cut(s)	333, 679
BmgT120I	GGNCC	2 cut(s)	28, 449
BmiI	GGNNCC	5 cut(s)	30, 78, 174, 317, 403
BmrFI	CCNGG	3 cut(s)	127, 203, 572
BpmI	CTGGAG	2 cut(s)	33, 185
Bpu1102I	GCTNAGC	1 cut(s)	719
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	452, 642
BsaWI	WCCGGW	3 cut(s)	165, 474, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 605
Bse118I	RCCGGY	1 cut(s)	474
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	203, 572
BseDI	CCNNGG	2 cut(s)	452, 642
BseGI	GGATG	2 cut(s)	109, 731
BseLI	CCNNNNNNNGG	2 cut(s)	165, 605
BseMII	CTCAG	2 cut(s)	340, 733
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	475
BseXI	GCAGC	2 cut(s)	134, 727
BshFI	GGCC	3 cut(s)	154, 224, 451
BshTI	ACCGGT	1 cut(s)	474
BsiHKAI	GWGCWC	2 cut(s)	334, 720
BsiHKCI	CYCGRG	2 cut(s)	333, 679
BsiSI	CCGG	4 cut(s)	126, 166, 475, 672
BslI	CCNNNNNNNGG	2 cut(s)	165, 605
BsmAI	GTCTC	2 cut(s)	269, 330
BsnI	GGCC	3 cut(s)	154, 224, 451
BsoBI	CYCGRG	2 cut(s)	333, 679
Bsp1286I	GDGCHC	3 cut(s)	175, 334, 720
Bsp143I	GATC	9 cut(s)	52, 76, 96, 184, 258, 380, 388, 401, 565
Bsp1720I	GCTNAGC	1 cut(s)	719
BspACI	CCGC	3 cut(s)	378, 654, 684
BspANI	GGCC	3 cut(s)	154, 224, 451
BspCNI	CTCAG	2 cut(s)	339, 732
BspLI	GGNNCC	5 cut(s)	30, 78, 174, 317, 403
BspMAI	CTGCAG	1 cut(s)	467
BspPI	GGATC	6 cut(s)	71, 84, 104, 388, 396, 409
BsrFI	RCCGGY	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	474
BssECI	CCNNGG	2 cut(s)	452, 642
BssMI	GATC	9 cut(s)	52, 76, 96, 184, 258, 380, 388, 401, 565
Bst2UI	CCWGG	2 cut(s)	203, 572
Bst4CI	ACNGT	5 cut(s)	24, 279, 608, 668, 695
Bst6I	CTCTTC	1 cut(s)	591
BstDEI	CTNAG	4 cut(s)	191, 326, 719, 753
BstDSI	CCRYGG	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	109, 731
BstKTI	GATC	9 cut(s)	55, 79, 99, 187, 261, 383, 391, 404, 568
BstMAI	GTCTC	2 cut(s)	269, 330
BstMBI	GATC	9 cut(s)	52, 76, 96, 184, 258, 380, 388, 401, 565
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 660, 684, 749
BstNI	CCWGG	2 cut(s)	203, 572
BstSCI	CCNGG	3 cut(s)	125, 201, 570
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	2 cut(s)	134, 727
BstX2I	RGATCY	5 cut(s)	52, 76, 258, 380, 401
BstYI	RGATCY	5 cut(s)	52, 76, 258, 380, 401
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	154, 224, 451
BtgI	CCRYGG	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	109, 731
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	474
Cfr13I	GGNCC	2 cut(s)	28, 449
CspAI	ACCGGT	1 cut(s)	474
CviAII	CATG	3 cut(s)	298, 547, 601
DdeI	CTNAG	4 cut(s)	191, 326, 719, 753
DpnI	GATC	9 cut(s)	54, 78, 98, 186, 260, 382, 390, 403, 567
DpnII	GATC	9 cut(s)	52, 76, 96, 184, 258, 380, 388, 401, 565
DraI	TTTAAA	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	591
EarI	CTCTTC	1 cut(s)	591
EciI	GGCGGA	1 cut(s)	393
Ecl136II	GAGCTC	2 cut(s)	332, 718
Eco147I	AGGCCT	1 cut(s)	224
Eco24I	GRGCYC	3 cut(s)	175, 334, 720
Eco47I	GGWCC	1 cut(s)	28
Eco53kI	GAGCTC	2 cut(s)	332, 718
Eco88I	CYCGRG	2 cut(s)	333, 679
EcoICRI	GAGCTC	2 cut(s)	332, 718
EcoRII	CCWGG	2 cut(s)	201, 570
EcoT38I	GRGCYC	3 cut(s)	175, 334, 720
FaeI	CATG	3 cut(s)	301, 550, 604
FaiI	YATR	6 cut(s)	216, 282, 299, 548, 602, 660
FatI	CATG	3 cut(s)	297, 546, 600
Fnu4HI	GCNGC	4 cut(s)	123, 655, 685, 741
FokI	GGATG	2 cut(s)	116, 718
FriOI	GRGCYC	3 cut(s)	175, 334, 720
Fsp4HI	GCNGC	4 cut(s)	123, 655, 685, 741
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	4 cut(s)	123, 655, 685, 741
GsuI	CTGGAG	2 cut(s)	33, 185
HaeIII	GGCC	3 cut(s)	154, 224, 451
HapII	CCGG	4 cut(s)	126, 166, 475, 672
Hin1II	CATG	3 cut(s)	301, 550, 604
HincII	GTYRAC	2 cut(s)	460, 472
HindII	GTYRAC	2 cut(s)	460, 472
HinfI	GANTC	2 cut(s)	4, 195
HpaII	CCGG	4 cut(s)	126, 166, 475, 672
HphI	GGTGA	3 cut(s)	480, 560, 620
Hpy166II	GTNNAC	2 cut(s)	460, 472
Hpy188I	TCNGA	5 cut(s)	273, 329, 363, 643, 736
Hpy188III	TCNNGA	7 cut(s)	50, 74, 254, 319, 335, 386, 713
Hpy8I	GTNNAC	2 cut(s)	460, 472
HpyAV	CCTTC	3 cut(s)	101, 502, 527
HpyCH4III	ACNGT	5 cut(s)	24, 279, 608, 668, 695
HpyCH4IV	ACGT	2 cut(s)	303, 705
HpyCH4V	TGCA	3 cut(s)	19, 465, 604
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 660, 684, 749
HpyF3I	CTNAG	4 cut(s)	191, 326, 719, 753
HpySE526I	ACGT	2 cut(s)	303, 705
Hsp92II	CATG	3 cut(s)	301, 550, 604
Kzo9I	GATC	9 cut(s)	52, 76, 96, 184, 258, 380, 388, 401, 565
LmnI	GCTCC	2 cut(s)	178, 205
Lsp1109I	GCAGC	2 cut(s)	134, 727
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	2 cut(s)	303, 705
MalI	GATC	9 cut(s)	54, 78, 98, 186, 260, 382, 390, 403, 567
MboI	GATC	9 cut(s)	52, 76, 96, 184, 258, 380, 388, 401, 565
MboII	GAAGA	3 cut(s)	358, 575, 578
MflI	RGATCY	5 cut(s)	52, 76, 258, 380, 401
MhlI	GDGCHC	3 cut(s)	175, 334, 720
MluCI	AATT	4 cut(s)	60, 249, 357, 442
MmeI	TCCRAC	2 cut(s)	6, 112
MroXI	GAANNNNTTC	1 cut(s)	585
MseI	TTAA	2 cut(s)	228, 356
MspI	CCGG	4 cut(s)	126, 166, 475, 672
MspR9I	CCNGG	3 cut(s)	127, 203, 572
MvaI	CCWGG	2 cut(s)	203, 572
MwoI	GCNNNNNNNGC	4 cut(s)	151, 660, 684, 749
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	9 cut(s)	52, 76, 96, 184, 258, 380, 388, 401, 565
NlaIII	CATG	3 cut(s)	301, 550, 604
NlaIV	GGNNCC	5 cut(s)	30, 78, 174, 317, 403
PaeR7I	CTCGAG	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	224
PdmI	GAANNNNTTC	1 cut(s)	585
PfeI	GAWTC	1 cut(s)	195
PfoI	TCCNGGA	1 cut(s)	201
PinAI	ACCGGT	1 cut(s)	474
PkrI	GCNGC	4 cut(s)	124, 656, 686, 742
Psp124BI	GAGCTC	2 cut(s)	334, 720
Psp1406I	AACGTT	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	201, 570
PspGI	CCWGG	2 cut(s)	201, 570
PspN4I	GGNNCC	5 cut(s)	30, 78, 174, 317, 403
PspPI	GGNCC	2 cut(s)	28, 449
PstI	CTGCAG	1 cut(s)	467
PsuI	RGATCY	5 cut(s)	52, 76, 258, 380, 401
SacI	GAGCTC	2 cut(s)	334, 720
SaqAI	TTAA	2 cut(s)	228, 356
SatI	GCNGC	4 cut(s)	123, 655, 685, 741
Sau3AI	GATC	9 cut(s)	52, 76, 96, 184, 258, 380, 388, 401, 565
Sau96I	GGNCC	2 cut(s)	28, 449
ScrFI	CCNGG	3 cut(s)	127, 203, 572
SduI	GDGCHC	3 cut(s)	175, 334, 720
SfcI	CTRYAG	1 cut(s)	463
Sfr274I	CTCGAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	28
SlaI	CTCGAG	1 cut(s)	333
SmlI	CTYRAG	2 cut(s)	333, 713
SmoI	CTYRAG	2 cut(s)	333, 713
SpeI	ACTAGT	1 cut(s)	407
Sse9I	AATT	4 cut(s)	60, 249, 357, 442
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	3 cut(s)	378, 654, 684
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	2 cut(s)	334, 720
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	3 cut(s)	125, 201, 570
TaaI	ACNGT	5 cut(s)	24, 279, 608, 668, 695
TaiI	ACGT	2 cut(s)	306, 708
TaqI	TCGA	3 cut(s)	99, 334, 387
TasI	AATT	4 cut(s)	60, 249, 357, 442
TauI	GCSGC	2 cut(s)	657, 687
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	2 cut(s)	228, 356
Tru9I	TTAA	2 cut(s)	228, 356
TscAI	CASTG	1 cut(s)	472
TseI	GCWGC	2 cut(s)	122, 740
TspDTI	ATGAA	3 cut(s)	120, 314, 535
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	2 cut(s)	60, 249
XhoI	CTCGAG	1 cut(s)	333
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.