Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004764

Physical Location & Seq

Genomic Coordinates Forward (+)

41080367 .. 41082112

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0295200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATTTTCTTATTGTGCAAAGTTGAATCTCATTCGGCGTTTCCAATTTACTATAAAGTTAAATATGAAGCAATAACTTCAACTGTTTATGCAATGGGTTCGGGATCAGAACTTGCAGCCCAAAATTTGTTCGATGAATTGCGAAAGCAGTACATGGAGAAGAAAAACTCTGGTATTGAGCTAACTCTCAAAGAAATTGCGGATTATGGTTTGAAGCATGCCCGGACAACGAAGAATACCAGTAACTCGGCTTATGTTTTTATTGGAATTGAAAATGAGAGGCCCGAAGCTTATGGTTTTGTTGTTAATGAATATTACATGGATAGTAGTGATCATATCGAGACATGGTGGGCAACTGGCAGTGGTTCAAAGTATGCTAAGCCAATACTCCAAGCTAATTACAACGATAACTTGTCTGAGCAACTTACATTGCAATTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009250 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010303 GO:0016051 GO:0016052 GO:0016787 GO:0016798 GO:0019252 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051060 GO:0071704 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_48 DUF3372

Protein Analysis

147

Amino Acids

16.72

Weight (kDa)

5.38

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	21 - 147	9.7e-07	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04360 AT5G04360
fragaria_vesca	FvH4_7g18370 FvH4_7g18370 FvH4_7g18370 FvH4_7g18370 FvH4_7g18370 FvH4_7g18370 FvH4_7g18370 FvH4_7g18370 FvH4_7g18370
malus_domestica	MD01G1100100.v1.1
prunus_persica	Prupe.2G205800_v2.0.a1 Prupe.2G205800_v2.0.a1 Prupe.2G205800_v2.0.a1 Prupe.2G205800_v2.0.a1 Prupe.2G205800_v2.0.a1
pyrus_communis	pycom01g12720
rosa_chinensis	RchiOBHm_Chr1g0362181
rosa_laevigata	RLG00000027669
rosa_multiflora	Rmu_sc0002133.1_g000006
rosa_roxburghii	Rroxscaffold_4G00294460
rosa_rugosa	Rorug01G0294900 Rorug01G0295000 Rorug01G0295100 Rorug01G0295200
rosa_samantha	Rh1AG304800 Rh1BG267600 Rh1CG285800 Rh1DG297600
rosa_wichuraiana	Rw1G027110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	1 cut(s)	152
AgsI	TTSAA	5 cut(s)	26, 81, 214, 272, 369
AluBI	AGCT	3 cut(s)	181, 290, 395
AluI	AGCT	3 cut(s)	181, 290, 395
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	112
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	282
AsuC2I	CCSGG	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	335
BisI	GCNGC	1 cut(s)	117
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	223
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	223
Bse1I	ACTGG	2 cut(s)	240, 361
Bse3DI	GCAATG	2 cut(s)	99, 428
BseMI	GCAATG	2 cut(s)	99, 428
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	2 cut(s)	240, 361
BseXI	GCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	104, 331
Bsp1720I	GCTNAGC	1 cut(s)	378
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	409
BspPI	GGATC	1 cut(s)	112
BsrDI	GCAATG	2 cut(s)	99, 428
BsrI	ACTGG	2 cut(s)	240, 361
BssMI	GATC	2 cut(s)	104, 331
Bst4CI	ACNGT	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	378, 417
BstKTI	GATC	2 cut(s)	107, 334
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	2 cut(s)	104, 331
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	219
Cfr13I	GGNCC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	4 cut(s)	154, 218, 319, 345
CviJI	RGCY	8 cut(s)	119, 181, 251, 283, 290, 382, 395, 440
CviKI_1	RGCY	8 cut(s)	119, 181, 251, 283, 290, 382, 395, 440
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	2 cut(s)	378, 417
DpnI	GATC	2 cut(s)	106, 333
DpnII	GATC	2 cut(s)	104, 331
FaeI	CATG	4 cut(s)	157, 221, 322, 348
FatI	CATG	4 cut(s)	153, 217, 318, 344
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	1 cut(s)	223
Hin1II	CATG	4 cut(s)	157, 221, 322, 348
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	109, 418
Hpy188III	TCNNGA	2 cut(s)	102, 340
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4V	TGCA	4 cut(s)	18, 92, 116, 433
HpyF3I	CTNAG	2 cut(s)	378, 417
Hsp92II	CATG	4 cut(s)	157, 221, 322, 348
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	104, 331
LpnPI	CCDG	4 cut(s)	156, 236, 253, 342
Lsp1109I	GCAGC	1 cut(s)	128
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	2 cut(s)	106, 333
MboI	GATC	2 cut(s)	104, 331
MboII	GAAGA	2 cut(s)	172, 244
MfeI	CAATTG	1 cut(s)	434
MluCI	AATT	7 cut(s)	45, 124, 137, 195, 267, 397, 434
MnlI	CCTC	1 cut(s)	273
MseI	TTAA	3 cut(s)	60, 306, 442
MspI	CCGG	1 cut(s)	223
MspR9I	CCNGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	434
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	2 cut(s)	104, 331
NlaIII	CATG	4 cut(s)	157, 221, 322, 348
NmeAIII	GCCGAG	1 cut(s)	227
NspI	RCATGY	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	282
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	60, 306, 442
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	2 cut(s)	104, 331
Sau96I	GGNCC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	3 cut(s)	183, 292, 397
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	7 cut(s)	45, 124, 137, 195, 267, 397, 434
SsiI	CCGC	1 cut(s)	200
SspI	AATATT	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	132, 339
TasI	AATT	7 cut(s)	45, 124, 137, 195, 267, 397, 434
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	3 cut(s)	60, 306, 442
Tru9I	TTAA	3 cut(s)	60, 306, 442
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	81, 150, 324
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	124
XceI	RCATGY	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.