Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007018

Physical Location & Seq

Genomic Coordinates Reverse (-)

23542778 .. 23543407

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0235700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAACCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCATATAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGTCTCGAGAGAAGCAGAAGAAAAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAAAGTTACCAATTGGAAACATGAGGATCAGTATATTAACTTTGGATCTTCTGCACCTGCTTCTTCTTCTGCTGGTGTGATGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGATTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTTCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

209

Amino Acids

23.4

Weight (kDa)

8.71

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	27 - 89	1.7e-08	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64030
fragaria_vesca	FvH4_1g24543 FvH4_1g24543 FvH4_1g24543 FvH4_1g24543 FvH4_1g24543
malus_domestica	MD15G1134500.v1.1
prunus_persica	Prupe.4G273900_v2.0.a1 Prupe.4G273900_v2.0.a1
pyrus_communis	pycom15g12110 pycom505g00120
rosa_chinensis	RchiOBHm_Chr2g0121981
rosa_laevigata	RLG00000018644
rosa_multiflora	Rmu_sc0003880.1_g000014
rosa_roxburghii	Rroxscaffold_2G00122100
rosa_rugosa	Rorug02G0235700 Rorug02G0235800
rosa_samantha	Rh2AG292400 Rh2BG302900 Rh2CG281500 Rh2DG316600 Rh2DG316700 Rh4AG294200 Rh4BG300200
rosa_wichuraiana	Rw2G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	78, 394
Acc36I	ACCTGC	3 cut(s)	78, 160, 394
AciI	CCGC	3 cut(s)	82, 546, 625
AclWI	GGATC	4 cut(s)	188, 363, 382, 460
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	497
AgsI	TTSAA	2 cut(s)	220, 473
AleI	CACNNNNGTG	1 cut(s)	555
AluBI	AGCT	4 cut(s)	130, 193, 580, 605
AluI	AGCT	4 cut(s)	130, 193, 580, 605
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	2 cut(s)	191, 258
AlwI	GGATC	4 cut(s)	188, 363, 382, 460
Ama87I	CYCGRG	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	477
AspS9I	GGNCC	2 cut(s)	153, 276
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	335, 455, 512
AvaI	CYCGRG	1 cut(s)	255
AvaII	GGWCC	2 cut(s)	153, 276
BaeGI	GKGCMC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	582
BccI	CCATC	3 cut(s)	26, 424, 530
BceAI	ACGGC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	191, 258
BfmI	CTRYAG	2 cut(s)	102, 162
BfuAI	ACCTGC	3 cut(s)	78, 160, 394
BisI	GCNGC	1 cut(s)	625
BlpI	GCTNAGC	1 cut(s)	581
BlsI	GCNGC	1 cut(s)	626
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	153, 276
BmeT110I	CYCGRG	1 cut(s)	255
BmgT120I	GGNCC	2 cut(s)	153, 276
BmiI	GGNNCC	3 cut(s)	6, 155, 623
BmrFI	CCNGG	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	173
Bpu1102I	GCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	1 cut(s)	596
BpuMI	CCSGG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	37, 292
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	1 cut(s)	595
BseSI	GKGCMC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	2 cut(s)	191, 258
BsmFI	GGGAC	1 cut(s)	139
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	300, 582
Bsp143I	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
Bsp1720I	GCTNAGC	1 cut(s)	581
BspACI	CCGC	3 cut(s)	82, 546, 625
BspCNI	CTCAG	1 cut(s)	594
BspLI	GGNNCC	3 cut(s)	6, 155, 623
BspMI	ACCTGC	3 cut(s)	78, 160, 394
BspPI	GGATC	4 cut(s)	188, 363, 382, 460
BspTNI	GGTCTC	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
Bst4CI	ACNGT	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	37, 292
BstKTI	GATC	7 cut(s)	109, 183, 213, 311, 358, 377, 455
BstMAI	GTCTC	2 cut(s)	191, 258
BstMBI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 591
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	102, 162
BstSLI	GKGCMC	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	3 cut(s)	180, 374, 452
BstYI	RGATCY	3 cut(s)	180, 374, 452
BtsCI	GGATG	2 cut(s)	37, 292
BveI	ACCTGC	3 cut(s)	78, 160, 394
Cfr13I	GGNCC	2 cut(s)	153, 276
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	8 cut(s)	70, 293, 301, 350, 463, 493, 497, 520
CviJI	RGCY	8 cut(s)	130, 193, 316, 561, 580, 585, 605, 624
CviKI_1	RGCY	8 cut(s)	130, 193, 316, 561, 580, 585, 605, 624
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	581
DpnI	GATC	7 cut(s)	108, 182, 212, 310, 357, 376, 454
DpnII	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	582
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	2 cut(s)	153, 276
Eco53kI	GAGCTC	1 cut(s)	580
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	582
FaeI	CATG	8 cut(s)	73, 296, 304, 353, 466, 496, 500, 523
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	8 cut(s)	69, 292, 300, 349, 462, 492, 496, 519
Fnu4HI	GCNGC	1 cut(s)	625
FokI	GGATG	2 cut(s)	44, 299
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	1 cut(s)	625
GluI	GCNGC	1 cut(s)	625
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	8 cut(s)	73, 296, 304, 353, 466, 496, 500, 523
HinfI	GANTC	2 cut(s)	94, 117
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	3 cut(s)	335, 455, 512
Hpy166II	GTNNAC	3 cut(s)	93, 244, 279
Hpy188I	TCNGA	3 cut(s)	177, 286, 535
Hpy188III	TCNNGA	5 cut(s)	220, 241, 255, 257, 619
Hpy8I	GTNNAC	3 cut(s)	93, 244, 279
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	1 cut(s)	554
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	3 cut(s)	304, 383, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 591
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	8 cut(s)	73, 296, 304, 353, 466, 496, 500, 523
Kzo9I	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
LmnI	GCTCC	2 cut(s)	84, 621
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	334, 548
MalI	GATC	7 cut(s)	108, 182, 212, 310, 357, 376, 454
MboI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
MboII	GAAGA	5 cut(s)	280, 369, 384, 387, 535
MfeI	CAATTG	1 cut(s)	340
MflI	RGATCY	3 cut(s)	180, 374, 452
MhlI	GDGCHC	2 cut(s)	300, 582
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	9 cut(s)	22, 29, 131, 171, 346, 492, 496, 533, 589
Mph1103I	ATGCAT	1 cut(s)	498
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	2 cut(s)	366, 420
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	193, 627
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	55
MunI	CAATTG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	79, 591
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
NlaIII	CATG	8 cut(s)	73, 296, 304, 353, 466, 496, 500, 523
NlaIV	GGNNCC	3 cut(s)	6, 155, 623
NmuCI	GTSAC	1 cut(s)	548
NsiI	ATGCAT	1 cut(s)	498
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	555
PaeR7I	CTCGAG	1 cut(s)	255
PaqCI	CACCTGC	2 cut(s)	78, 394
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	626
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	153
Psp124BI	GAGCTC	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	6, 155, 623
PspPI	GGNCC	2 cut(s)	153, 276
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	3 cut(s)	180, 374, 452
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	555
SacI	GAGCTC	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	366, 420
SatI	GCNGC	1 cut(s)	625
Sau3AI	GATC	7 cut(s)	106, 180, 210, 308, 355, 374, 452
Sau96I	GGNCC	2 cut(s)	153, 276
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	55
SduI	GDGCHC	2 cut(s)	300, 582
SfcI	CTRYAG	2 cut(s)	102, 162
Sfr274I	CTCGAG	1 cut(s)	255
SinI	GGWCC	2 cut(s)	153, 276
SlaI	CTCGAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	255, 575
SmoI	CTYRAG	2 cut(s)	255, 575
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	3 cut(s)	82, 546, 625
SstI	GAGCTC	1 cut(s)	582
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	554
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	2 cut(s)	213, 256
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	627
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	366, 420
Tru9I	TTAA	2 cut(s)	366, 420
TseFI	GTSAC	1 cut(s)	548
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	281, 473, 536
VpaK11BI	GGWCC	2 cut(s)	153, 276
XceI	RCATGY	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	255
XmnI	GAANNNNTTC	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.