Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007018

Physical Location & Seq

Genomic Coordinates Forward (+)

39291218 .. 39291664

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG316700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGAATTTTGATGAAACAAAGGATGCGGAGAAGGAGAATATTCAGATTGACGAGAAAGTGGAAAAAACTGATAAGGAGCAAGATAGTGAGAAATCGGATAATGGGCAGACTGTAAACCAGACTTCAAATGAGGTATTTCCTTCTGTTGCTCAGTCAGAGCTTTTGAATGAGACTGCAACCCAAAATGGGTCATGGTCAACTCAGTTGACAGAATCAAAGAATGAGAAGGAGGCTCAACGTTCTTCTGACCAGCAAATTGATTACAATTGGAAACTTTGTAATTCAACTGCTGGGCCTGATTTCATCCCATGCCTTGACAATTTGCAAGCCATTAGGAGTCTTCACAGTACCAAGCATTATGAACATCGGGAGAGGCACTGTCCAGAGGAGCCTCCCACCTGCCTCCTTCCTCTTCCAGAAGGATATAAACGCCCAATTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

148

Amino Acids

16.98

Weight (kDa)

4.66

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	101 - 148	9.6e-13	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64030
fragaria_vesca	FvH4_1g24543 FvH4_1g24543 FvH4_1g24543 FvH4_1g24543 FvH4_1g24543
malus_domestica	MD15G1134500.v1.1
prunus_persica	Prupe.4G273900_v2.0.a1 Prupe.4G273900_v2.0.a1
pyrus_communis	pycom15g12110 pycom505g00120
rosa_chinensis	RchiOBHm_Chr2g0121981
rosa_laevigata	RLG00000018644
rosa_multiflora	Rmu_sc0003880.1_g000014
rosa_roxburghii	Rroxscaffold_2G00122100
rosa_rugosa	Rorug02G0235700 Rorug02G0235800
rosa_samantha	Rh2AG292400 Rh2BG302900 Rh2CG281500 Rh2DG316600 Rh2DG316700 Rh4AG294200 Rh4BG300200
rosa_wichuraiana	Rw2G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	410
Acc36I	ACCTGC	1 cut(s)	410
AciI	CCGC	1 cut(s)	29
AclI	AACGTT	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	3 cut(s)	129, 169, 288
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	393
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	31, 306
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMII	CTCAG	2 cut(s)	167, 218
BseRI	GAGGAG	1 cut(s)	404
BseYI	CCCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	2 cut(s)	166, 217
BspLI	GGNNCC	1 cut(s)	393
BspMI	ACCTGC	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	115, 350, 383
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	153, 204
BstF5I	GGATG	2 cut(s)	31, 306
BstMAI	GTCTC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	31, 306
BtsIMutI	CAGTG	1 cut(s)	379
BveI	ACCTGC	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	2 cut(s)	195, 312
CviJI	RGCY	5 cut(s)	163, 236, 298, 332, 394
CviKI_1	RGCY	5 cut(s)	163, 236, 298, 332, 394
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	153, 204
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
FaeI	CATG	2 cut(s)	198, 315
FaiI	YATR	4 cut(s)	196, 313, 363, 429
FatI	CATG	2 cut(s)	194, 311
FokI	GGATG	2 cut(s)	38, 293
GsaI	CCCAGC	1 cut(s)	297
HaeIII	GGCC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	198, 315
HincII	GTYRAC	2 cut(s)	201, 210
HindII	GTYRAC	2 cut(s)	201, 210
HinfI	GANTC	2 cut(s)	215, 340
Hpy166II	GTNNAC	3 cut(s)	118, 201, 210
Hpy188I	TCNGA	4 cut(s)	48, 100, 160, 250
Hpy188III	TCNNGA	3 cut(s)	371, 386, 419
Hpy8I	GTNNAC	3 cut(s)	118, 201, 210
HpyAV	CCTTC	5 cut(s)	28, 153, 223, 416, 419
HpyCH4III	ACNGT	3 cut(s)	115, 350, 383
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	179, 328
HpyF3I	CTNAG	2 cut(s)	153, 204
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	198, 315
LmnI	GCTCC	2 cut(s)	79, 391
LpnPI	CCDG	7 cut(s)	134, 266, 279, 312, 399, 415, 432
LweI	GCATC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	241
MboII	GAAGA	3 cut(s)	237, 335, 407
MfeI	CAATTG	2 cut(s)	268, 438
MluCI	AATT	6 cut(s)	7, 258, 268, 283, 322, 438
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	7 cut(s)	127, 226, 369, 382, 405, 416, 423
MunI	CAATTG	2 cut(s)	268, 438
NlaIII	CATG	2 cut(s)	198, 315
NlaIV	GGNNCC	1 cut(s)	393
PaqCI	CACCTGC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
Psp1406I	AACGTT	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	296
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	1 cut(s)	349
SetI	ASST	4 cut(s)	138, 165, 244, 404
SfaNI	GCATC	1 cut(s)	16
Sse9I	AATT	6 cut(s)	7, 258, 268, 283, 322, 438
SsiI	CCGC	1 cut(s)	29
SspI	AATATT	1 cut(s)	43
TaaI	ACNGT	3 cut(s)	115, 350, 383
TaiI	ACGT	1 cut(s)	244
TasI	AATT	6 cut(s)	7, 258, 268, 283, 322, 438
TfiI	GAWTC	1 cut(s)	215
TscAI	CASTG	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	30, 295, 378
TspRI	CASTG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.