Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007018

Physical Location & Seq

Genomic Coordinates Forward (+)

23554751 .. 23555254

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0235800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGAGGCAGTGAGGCACGCCGATTCGAAGCCTCTTCCATTAAACCACCTGCAGAACAGAGACAACCGGTCTGCGTCCTCGACATCCGCTTCCCTGCTCATCCGGTCGTCGAGTTGCAGAGGCACCAGGCCAGCGTCAAAGCCGTTGCTTGGGCCAACCCGTCTGCACTGCCGGGGACGACTCACAGGCCCTCATCTGGGACCTCTCCTCCATGGGCCAACCCGTCGAGGGTGGCCACGATCCCATTCTGGCCTACACTTCCGTCTGCCGGGGCAGAGCTTGAGCAACTGCAGTGGTGTTCTTCTCAGCCCGATTGCGGCGAAGCCGAACCCGACTTTGCCGCCGGAAAGATCGGTGAAGCCGAGGTTACCGGGGGCGTGGCCGGTGGCCTGGAAGAGGGTGGTGGGGAGGACAGAGCCGTCGGAGATTTTGGGGAGCTTGGCGGGGTCGTAGTCGCGGCGAGTTTCTGGCCGATACCGGCGAGGCCGATATATATATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

167

Amino Acids

17.53

Weight (kDa)

4.91

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007018)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64030
fragaria_vesca	FvH4_1g24543 FvH4_1g24543 FvH4_1g24543 FvH4_1g24543 FvH4_1g24543
malus_domestica	MD15G1134500.v1.1
prunus_persica	Prupe.4G273900_v2.0.a1 Prupe.4G273900_v2.0.a1
pyrus_communis	pycom15g12110 pycom505g00120
rosa_chinensis	RchiOBHm_Chr2g0121981
rosa_laevigata	RLG00000018644
rosa_multiflora	Rmu_sc0003880.1_g000014
rosa_roxburghii	Rroxscaffold_2G00122100
rosa_rugosa	Rorug02G0235700 Rorug02G0235800
rosa_samantha	Rh2AG292400 Rh2BG302900 Rh2CG281500 Rh2DG316600 Rh2DG316700 Rh4AG294200 Rh4BG300200
rosa_wichuraiana	Rw2G023450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	58
AasI	GACNNNNNNGTC	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	123
AccII	CGCG	1 cut(s)	458
AciI	CCGC	5 cut(s)	88, 318, 342, 444, 458
AclWI	GGATC	1 cut(s)	235
AcoI	YGGCCR	3 cut(s)	234, 381, 470
AfiI	CCNNNNNNNGG	7 cut(s)	150, 197, 198, 229, 269, 317, 397
AgeI	ACCGGT	1 cut(s)	67
AhdI	GACNNNNNGTC	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	126, 390
AluBI	AGCT	2 cut(s)	280, 439
AluI	AGCT	2 cut(s)	280, 439
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	235
AsiGI	ACCGGT	1 cut(s)	67
AspS9I	GGNCC	4 cut(s)	153, 189, 201, 216
AsuC2I	CCSGG	3 cut(s)	174, 271, 373
AsuHPI	GGTGA	1 cut(s)	368
AsuII	TTCGAA	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	123
BceAI	ACGGC	2 cut(s)	128, 404
BciT130I	CCWGG	2 cut(s)	128, 392
BcnI	CCSGG	3 cut(s)	174, 271, 373
BcoDI	GTCTC	1 cut(s)	55
BfmI	CTRYAG	2 cut(s)	51, 290
BfuAI	ACCTGC	1 cut(s)	58
BisI	GCNGC	3 cut(s)	319, 342, 459
BlsI	GCNGC	3 cut(s)	320, 343, 460
Bme1390I	CCNGG	5 cut(s)	128, 174, 271, 373, 392
Bme18I	GGWCC	1 cut(s)	201
BmeRI	GACNNNNNGTC	1 cut(s)	68
BmgT120I	GGNCC	4 cut(s)	153, 189, 201, 216
BmiI	GGNNCC	2 cut(s)	125, 202
BmrFI	CCNGG	5 cut(s)	128, 174, 271, 373, 392
Bpu14I	TTCGAA	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	3 cut(s)	174, 271, 373
BsaJI	CCNNGG	5 cut(s)	173, 212, 270, 363, 372
BsaWI	WCCGGW	2 cut(s)	67, 103
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	7 cut(s)	150, 197, 198, 229, 269, 317, 397
Bse118I	RCCGGY	3 cut(s)	67, 383, 478
BseBI	CCWGG	2 cut(s)	128, 392
BseDI	CCNNGG	5 cut(s)	173, 212, 270, 363, 372
BseGI	GGATG	2 cut(s)	84, 100
BseLI	CCNNNNNNNGG	7 cut(s)	150, 197, 198, 229, 269, 317, 397
BseMII	CTCAG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	458
Bsh1285I	CGRYCG	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	123
BshTI	ACCGGT	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	108
BsiSI	CCGG	8 cut(s)	68, 104, 173, 270, 345, 372, 384, 479
BslFI	GGGAC	2 cut(s)	190, 214
BslI	CCNNNNNNNGG	7 cut(s)	150, 197, 198, 229, 269, 317, 397
BsmAI	GTCTC	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	190, 214
Bsp119I	TTCGAA	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	240, 351
Bsp19I	CCATGG	1 cut(s)	212
BspACI	CCGC	5 cut(s)	88, 318, 342, 444, 458
BspCNI	CTCAG	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	458
BspLI	GGNNCC	2 cut(s)	125, 202
BspMAI	CTGCAG	2 cut(s)	55, 294
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	235
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	123
BsrFI	RCCGGY	3 cut(s)	67, 383, 478
BssAI	RCCGGY	3 cut(s)	67, 383, 478
BssECI	CCNNGG	5 cut(s)	173, 212, 270, 363, 372
BssMI	GATC	2 cut(s)	240, 351
BssT1I	CCWWGG	1 cut(s)	212
Bst2UI	CCWGG	2 cut(s)	128, 392
Bst6I	CTCTTC	2 cut(s)	40, 390
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	19, 133
BstDEI	CTNAG	1 cut(s)	306
BstDSI	CCRYGG	1 cut(s)	212
BstEII	GGTNACC	1 cut(s)	367
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	2 cut(s)	84, 100
BstFNI	CGCG	1 cut(s)	458
BstKTI	GATC	2 cut(s)	243, 354
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	2 cut(s)	240, 351
BstMCI	CGRYCG	1 cut(s)	108
BstNI	CCWGG	2 cut(s)	128, 392
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	5 cut(s)	126, 172, 269, 371, 390
BstSFI	CTRYAG	2 cut(s)	51, 290
BstUI	CGCG	1 cut(s)	458
BtgI	CCRYGG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	84, 100
BtsI	GCAGTG	3 cut(s)	16, 167, 299
BtsIMutI	CAGTG	3 cut(s)	16, 167, 299
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	19, 133
Cfr10I	RCCGGY	3 cut(s)	67, 383, 478
Cfr13I	GGNCC	4 cut(s)	153, 189, 201, 216
CseI	GACGC	2 cut(s)	64, 124
CspAI	ACCGGT	1 cut(s)	67
CspCI	CAANNNNNGTGG	2 cut(s)	275, 310
CviAII	CATG	1 cut(s)	213
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	2 cut(s)	242, 353
DpnII	GATC	2 cut(s)	240, 351
DrdI	GACNNNNNNGTC	1 cut(s)	419
DriI	GACNNNNNGTC	1 cut(s)	68
DseDI	GACNNNNNNGTC	1 cut(s)	419
EaeI	YGGCCR	3 cut(s)	234, 381, 470
Eam1104I	CTCTTC	2 cut(s)	40, 390
Eam1105I	GACNNNNNGTC	1 cut(s)	68
EarI	CTCTTC	2 cut(s)	40, 390
Eco130I	CCWWGG	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoO109I	RGGNCCY	2 cut(s)	189, 201
EcoO65I	GGTNACC	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	126, 390
EcoT14I	CCWWGG	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	212
FaeI	CATG	1 cut(s)	216
FaiI	YATR	5 cut(s)	214, 493, 495, 497, 499
FaqI	GGGAC	2 cut(s)	190, 214
FatI	CATG	1 cut(s)	212
FauI	CCCGC	1 cut(s)	437
Fnu4HI	GCNGC	3 cut(s)	319, 342, 459
FokI	GGATG	2 cut(s)	71, 87
Fsp4HI	GCNGC	3 cut(s)	319, 342, 459
GluI	GCNGC	3 cut(s)	319, 342, 459
HapII	CCGG	8 cut(s)	68, 104, 173, 270, 345, 372, 384, 479
HgaI	GACGC	2 cut(s)	64, 124
Hin1II	CATG	1 cut(s)	216
HinfI	GANTC	2 cut(s)	24, 181
HpaII	CCGG	8 cut(s)	68, 104, 173, 270, 345, 372, 384, 479
HphI	GGTGA	1 cut(s)	368
Hpy188I	TCNGA	1 cut(s)	425
Hpy99I	CGWCG	3 cut(s)	113, 229, 425
HpyCH4V	TGCA	4 cut(s)	53, 118, 167, 292
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	240, 351
LmnI	GCTCC	1 cut(s)	436
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	2 cut(s)	242, 353
MboI	GATC	2 cut(s)	240, 351
MboII	GAAGA	3 cut(s)	27, 294, 407
MlsI	TGGCCA	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	236
MlyI	GAGTC	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	403
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	2 cut(s)	42, 502
Msp20I	TGGCCA	1 cut(s)	236
MspI	CCGG	8 cut(s)	68, 104, 173, 270, 345, 372, 384, 479
MspR9I	CCNGG	5 cut(s)	128, 174, 271, 373, 392
MvaI	CCWGG	2 cut(s)	128, 392
MvnI	CGCG	1 cut(s)	458
NciI	CCSGG	3 cut(s)	174, 271, 373
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	2 cut(s)	240, 351
NlaIII	CATG	1 cut(s)	216
NlaIV	GGNNCC	2 cut(s)	125, 202
NmeAIII	GCCGAG	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	27
PaqCI	CACCTGC	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	24
PinAI	ACCGGT	1 cut(s)	67
PkrI	GCNGC	3 cut(s)	320, 343, 460
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	201
Psp5II	RGGWCCY	1 cut(s)	201
Psp6I	CCWGG	2 cut(s)	126, 390
PspEI	GGTNACC	1 cut(s)	367
PspGI	CCWGG	2 cut(s)	126, 390
PspN4I	GGNNCC	2 cut(s)	125, 202
PspPI	GGNCC	4 cut(s)	153, 189, 201, 216
PspPPI	RGGWCCY	1 cut(s)	201
PstI	CTGCAG	2 cut(s)	55, 294
SaqAI	TTAA	2 cut(s)	42, 502
SatI	GCNGC	3 cut(s)	319, 342, 459
Sau3AI	GATC	2 cut(s)	240, 351
Sau96I	GGNCC	4 cut(s)	153, 189, 201, 216
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	5 cut(s)	128, 174, 271, 373, 392
SetI	ASST	5 cut(s)	52, 206, 282, 369, 441
SfcI	CTRYAG	2 cut(s)	51, 290
SfuI	TTCGAA	1 cut(s)	27
SinI	GGWCC	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SsiI	CCGC	5 cut(s)	88, 318, 342, 444, 458
StyD4I	CCNGG	5 cut(s)	126, 172, 269, 371, 390
StyI	CCWWGG	1 cut(s)	212
TaqI	TCGA	4 cut(s)	27, 81, 111, 227
TauI	GCSGC	3 cut(s)	321, 344, 461
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	2 cut(s)	42, 502
Tru9I	TTAA	2 cut(s)	42, 502
TscAI	CASTG	3 cut(s)	16, 174, 299
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	3 cut(s)	16, 174, 299
VpaK11BI	GGWCC	1 cut(s)	201
XagI	CCTNNNNNAGG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.