Rorug03G0104700

Ethylene-insensitive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002662
Physical Location & Seq
Reverse (-)
8300104 .. 8303767
3664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0104700.1

Sequence Viewer

Length: 708 bp
ATGGCAATGATCGAAGATGTTGCAGCGAGTTTCACATTGTCACTGGCCCTCCTAGGCGATGATGTGGTGGATATCTCCAAGATGCTGGGAGCGGATACCAGGCGAGGCTCTCAGGCATACCTCTTAGGCAGACCCCTCACTATGCATAACACGTACCAGATCTACAGCGCCATTTCAAGAGGATTTGGGTTCTCAACGTTGCTTTCAAGGTTCAAGAAAGAGCGCAGAACTCTGGTATCTTTTGACCTACGCAAGGACAGGAACAAGACGCCTATCCTGCCTCCTGTGGCACGTAATTTGTTTGGCTCTAGTTCGTCATCCAAGTTGCGCAAGCCACTGGTTCTTCGTCATGCAAATCTGCAGGCATCTGAGGATGCTAATAAGCAGCTTGCTTTGGTCCTCAGTTCAGAACATTCTCCTTTGAAGCATGGAAGACCTAGCTCTCCTTTTGTCTCTCCAAAGAAACCCAGGACCATGCTTGGAGAGCTTGTAGTTAGAGGCAGTGGTTCACCTGTACCAACTAAAAAGGTCAAGAAGCCCGCAGACTCTTTCAAGCTTTATGCTAATTCGTTGGGGCTAGTTGAAACACCAGGTGGCATGCTTGTACCTGCAGAAGTGATGATGCCCCAAGGAGGTGCCCTTGAAAACTACACTGTCAAAAAGAAAAAAGGGAGGCCTTTGGGGTCCAAAAACAAGAATCCTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0001736 GO:0001738 GO:0002009 GO:0002237 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007164 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009755 GO:0009756 GO:0009787 GO:0009789 GO:0009814 GO:0009861 GO:0009871 GO:0009873 GO:0009888 GO:0009914 GO:0009926 GO:0009966 GO:0009967 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010053 GO:0010054 GO:0010087 GO:0010104 GO:0010119 GO:0010150 GO:0010182 GO:0010646 GO:0010647 GO:0010817 GO:0016043 GO:0021700 GO:0022622 GO:0023051 GO:0023052 GO:0023056 GO:0030154 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0035556 GO:0042221 GO:0042545 GO:0042742 GO:0043207 GO:0045087 GO:0045229 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048585 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060429 GO:0060918 GO:0065007 GO:0065008 GO:0070297 GO:0070727 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0071554 GO:0071555 GO:0071695 GO:0071840 GO:0080134 GO:0090558 GO:0090627 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:1901363 GO:1901419 GO:1901421 GO:1901700 GO:1901701 GO:1902531 GO:1905392 GO:1905957 GO:1905959
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Nramp

Protein Analysis

235

Amino Acids

25.6

Weight (kDa)

10.42

Isoelectric Point (pI)

57.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 329
Acc36I ACCTGC 1 cut(s) 616
AccB1I GGYRCC 1 cut(s) 635
AccBSI CCGCTC 1 cut(s) 92
AciI CCGC 2 cut(s) 92, 540
AclI AACGTT 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 269
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 3 cut(s) 155, 516, 606
AfiI CCNNNNNNNGG 2 cut(s) 253, 632
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 7 cut(s) 177, 207, 214, 424, 553, 584, 644
AjnI CCWGG 3 cut(s) 98, 467, 589
AluBI AGCT 4 cut(s) 388, 441, 487, 556
AluI AGCT 4 cut(s) 388, 441, 487, 556
Alw26I GTCTC 1 cut(s) 457
AoxI GGCC 2 cut(s) 45, 674
ApeKI GCWGC 2 cut(s) 23, 385
AspA2I CCTAGG 1 cut(s) 52
AspLEI GCGC 3 cut(s) 170, 225, 330
AspS9I GGNCC 4 cut(s) 46, 397, 471, 684
AsuHPI GGTGA 1 cut(s) 501
AvaII GGWCC 3 cut(s) 397, 471, 684
AvrII CCTAGG 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 640
BaeI ACNNNNGTAYC 2 cut(s) 219, 252
BanI GGYRCC 1 cut(s) 635
BbsI GAAGAC 1 cut(s) 439
BbvI GCAGC 2 cut(s) 35, 397
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 3 cut(s) 100, 469, 591
BciVI GTATCC 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 4 cut(s) 53, 309, 438, 578
BfmI CTRYAG 3 cut(s) 163, 359, 609
BfoI RGCGCY 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 616
BfuI GTATCC 1 cut(s) 88
BglII AGATCT 1 cut(s) 159
BisI GCNGC 2 cut(s) 24, 386
BlnI CCTAGG 1 cut(s) 52
BlsI GCNGC 2 cut(s) 25, 387
Bme1390I CCNGG 3 cut(s) 100, 469, 591
Bme18I GGWCC 3 cut(s) 397, 471, 684
BmgT120I GGNCC 4 cut(s) 46, 397, 471, 684
BmiI GGNNCC 2 cut(s) 637, 685
BmrFI CCNGG 3 cut(s) 100, 469, 591
BmsI GCATC 4 cut(s) 72, 364, 374, 612
BpiI GAAGAC 1 cut(s) 439
BsaAI YACGTR 2 cut(s) 153, 293
BsaHI GRCGYC 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 52, 467, 628
BsaXI ACNNNNNCTCC 4 cut(s) 33, 63, 474, 504
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 632
Bse1I ACTGG 2 cut(s) 48, 342
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 3 cut(s) 100, 469, 591
BseDI CCNNGG 3 cut(s) 52, 467, 628
BseGI GGATG 2 cut(s) 317, 379
BseLI CCNNNNNNNGG 2 cut(s) 253, 632
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 125, 360, 415
BseNI ACTGG 2 cut(s) 48, 342
BseSI GKGCMC 1 cut(s) 640
BseXI GCAGC 2 cut(s) 35, 397
BseYI CCCAGC 1 cut(s) 85
BshFI GGCC 2 cut(s) 47, 676
BshNI GGYRCC 1 cut(s) 635
BslI CCNNNNNNNGG 2 cut(s) 253, 632
BsmAI GTCTC 1 cut(s) 457
BsnI GGCC 2 cut(s) 47, 676
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 2 cut(s) 9, 159
BspACI CCGC 2 cut(s) 92, 540
BspANI GGCC 2 cut(s) 47, 676
BspCNI CTCAG 3 cut(s) 124, 361, 414
BspLI GGNNCC 2 cut(s) 637, 685
BspMAI CTGCAG 2 cut(s) 363, 613
BspMI ACCTGC 1 cut(s) 616
BspT107I GGYRCC 1 cut(s) 635
BsrBI CCGCTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 2 cut(s) 48, 342
BssECI CCNNGG 3 cut(s) 52, 467, 628
BssMI GATC 2 cut(s) 9, 159
BssNI GRCGYC 1 cut(s) 269
BssT1I CCWWGG 2 cut(s) 52, 628
Bst2UI CCWGG 3 cut(s) 100, 469, 591
Bst4CI ACNGT 1 cut(s) 655
BstACI GRCGYC 1 cut(s) 269
BstBAI YACGTR 2 cut(s) 153, 293
BstC8I GCNNGC 5 cut(s) 332, 363, 390, 540, 599
BstDEI CTNAG 5 cut(s) 111, 124, 369, 401, 705
BstENI CCTNNNNNAGG 1 cut(s) 251
BstF5I GGATG 2 cut(s) 317, 379
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 3 cut(s) 170, 225, 330
BstKTI GATC 2 cut(s) 12, 162
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 2 cut(s) 9, 159
BstMWI GCNNNNNNNGC 2 cut(s) 277, 484
BstNI CCWGG 3 cut(s) 100, 469, 591
BstNSI RCATGY 1 cut(s) 601
BstSCI CCNGG 3 cut(s) 98, 467, 589
BstSFI CTRYAG 3 cut(s) 163, 359, 609
BstSLI GKGCMC 1 cut(s) 640
BstV1I GCAGC 2 cut(s) 35, 397
BstV2I GAAGAC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 85
BstYI RGATCY 1 cut(s) 159
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 2 cut(s) 47, 676
BtgZI GCGATG 1 cut(s) 72
BtsCI GGATG 2 cut(s) 317, 379
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 4 cut(s) 41, 335, 508, 651
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 5 cut(s) 332, 363, 390, 540, 599
CfoI GCGC 3 cut(s) 170, 225, 330
Cfr13I GGNCC 4 cut(s) 46, 397, 471, 684
CseI GACGC 1 cut(s) 277
CsiI ACCWGGT 1 cut(s) 589
Csp6I GTAC 3 cut(s) 154, 515, 605
CviAII CATG 4 cut(s) 350, 428, 475, 598
CviQI GTAC 3 cut(s) 154, 515, 605
DdeI CTNAG 5 cut(s) 111, 124, 369, 401, 705
DpnI GATC 2 cut(s) 11, 161
DpnII GATC 2 cut(s) 9, 159
DraIII CACNNNGTG 1 cut(s) 593
Eco130I CCWWGG 2 cut(s) 52, 628
Eco147I AGGCCT 1 cut(s) 676
Eco32I GATATC 1 cut(s) 73
Eco47I GGWCC 3 cut(s) 397, 471, 684
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoRII CCWGG 3 cut(s) 98, 467, 589
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 2 cut(s) 52, 628
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 2 cut(s) 52, 628
FaeI CATG 4 cut(s) 353, 431, 478, 601
FaiI YATR 8 cut(s) 118, 143, 147, 351, 429, 476, 561, 599
FatI CATG 4 cut(s) 349, 427, 474, 597
FauI CCCGC 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 24, 386
FokI GGATG 2 cut(s) 304, 386
Fsp4HI GCNGC 2 cut(s) 24, 386
FspBI CTAG 4 cut(s) 53, 309, 438, 578
FspI TGCGCA 1 cut(s) 329
GlaI GCGC 3 cut(s) 169, 224, 329
GluI GCNGC 2 cut(s) 24, 386
GsaI CCCAGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 171
HaeIII GGCC 2 cut(s) 47, 676
HgaI GACGC 1 cut(s) 277
HhaI GCGC 3 cut(s) 170, 225, 330
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 4 cut(s) 353, 431, 478, 601
Hin6I GCGC 3 cut(s) 168, 223, 328
HinP1I GCGC 3 cut(s) 168, 223, 328
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 2 cut(s) 545, 697
HphI GGTGA 1 cut(s) 501
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 2 cut(s) 370, 409
Hpy188III TCNNGA 3 cut(s) 177, 214, 532
Hpy8I GTNNAC 1 cut(s) 509
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 3 cut(s) 152, 197, 292
HpyCH4V TGCA 5 cut(s) 23, 145, 353, 361, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 277, 484
HpyF3I CTNAG 5 cut(s) 111, 124, 369, 401, 705
HpySE526I ACGT 3 cut(s) 152, 197, 292
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 4 cut(s) 353, 431, 478, 601
HspAI GCGC 3 cut(s) 168, 223, 328
Kzo9I GATC 2 cut(s) 9, 159
LmnI GCTCC 1 cut(s) 89
Lsp1109I GCAGC 2 cut(s) 35, 397
LweI GCATC 4 cut(s) 72, 364, 374, 612
MabI ACCWGGT 1 cut(s) 589
MaeI CTAG 4 cut(s) 53, 309, 438, 578
MaeII ACGT 3 cut(s) 152, 197, 292
MaeIII GTNAC 1 cut(s) 39
MalI GATC 2 cut(s) 11, 161
MbiI CCGCTC 1 cut(s) 92
MboI GATC 2 cut(s) 9, 159
MboII GAAGA 3 cut(s) 26, 335, 444
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 2 cut(s) 295, 565
MlyI GAGTC 1 cut(s) 539
Mph1103I ATGCAT 1 cut(s) 147
MspR9I CCNGG 3 cut(s) 100, 469, 591
MvaI CCWGG 3 cut(s) 100, 469, 591
MwoI GCNNNNNNNGC 2 cut(s) 277, 484
NdeII GATC 2 cut(s) 9, 159
NlaIII CATG 4 cut(s) 353, 431, 478, 601
NlaIV GGNNCC 2 cut(s) 637, 685
NmuCI GTSAC 1 cut(s) 39
NsbI TGCGCA 1 cut(s) 329
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 1 cut(s) 601
PaeI GCATGC 1 cut(s) 601
PceI AGGCCT 1 cut(s) 676
PfeI GAWTC 1 cut(s) 697
PkrI GCNGC 2 cut(s) 25, 387
PleI GAGTC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 539
Ppu21I YACGTR 2 cut(s) 153, 293
Psp1406I AACGTT 1 cut(s) 197
Psp6I CCWGG 3 cut(s) 98, 467, 589
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 3 cut(s) 98, 467, 589
PspN4I GGNNCC 2 cut(s) 637, 685
PspPI GGNCC 4 cut(s) 46, 397, 471, 684
PstI CTGCAG 2 cut(s) 363, 613
PsuI RGATCY 1 cut(s) 159
RsaI GTAC 3 cut(s) 155, 516, 606
RsaNI GTAC 3 cut(s) 154, 515, 605
SatI GCNGC 2 cut(s) 24, 386
Sau3AI GATC 2 cut(s) 9, 159
Sau96I GGNCC 4 cut(s) 46, 397, 471, 684
SchI GAGTC 1 cut(s) 539
ScrFI CCNGG 3 cut(s) 100, 469, 591
SduI GDGCHC 1 cut(s) 640
SexAI ACCWGGT 1 cut(s) 589
SfaNI GCATC 4 cut(s) 72, 364, 374, 612
SfcI CTRYAG 3 cut(s) 163, 359, 609
SinI GGWCC 3 cut(s) 397, 471, 684
SphI GCATGC 1 cut(s) 601
Sse9I AATT 2 cut(s) 295, 565
SseBI AGGCCT 1 cut(s) 676
SsiI CCGC 2 cut(s) 92, 540
SspMI CTAG 4 cut(s) 53, 309, 438, 578
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 3 cut(s) 98, 467, 589
StyI CCWWGG 2 cut(s) 52, 628
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 3 cut(s) 155, 200, 295
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 295, 565
TfiI GAWTC 1 cut(s) 697
TscAI CASTG 4 cut(s) 48, 342, 508, 658
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 2 cut(s) 23, 385
Tsp45I GTSAC 1 cut(s) 39
TspRI CASTG 4 cut(s) 48, 342, 508, 658
VpaK11BI GGWCC 3 cut(s) 397, 471, 684
XagI CCTNNNNNAGG 1 cut(s) 251
XceI RCATGY 1 cut(s) 601
XmaJI CCTAGG 1 cut(s) 52
XspI CTAG 4 cut(s) 53, 309, 438, 578
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.