Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007674

Physical Location & Seq

Genomic Coordinates Reverse (-)

20625262 .. 20626182

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0144700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAAGAAACTTGGAGACCAAGTGGTTAAGATCTGCATGTCCATGTTGGCCAAACTCCAAGTACACAATAAGAACAAACCAAGGGGATCTTCCAATAAGACGATGGAGGATCAGAACAAACATGATGCTGCCAAGACAAGCAGTACTAGTTCACTGAACAACAGTAAAAATACTAATACAACTAGTACCTTTATATTTAAATGCCTGTTCTGTAATGAGGAAACTCCTCTACTAAACGCATTCCATATAAAGGGTTGCAACCATTTTTTTTGTCCCCCATGCATTGTCAAATTCGTGGTGTCCAAGCTCCAAGATGACATCACGTCCATTATGTGCCCGGCATCATACTGCAGTACTGGAGTGTTAGACCTCGAGTACTGCCGAAGAGTCCTCCCGAAGGATGTAACTGATCGATGGGAAAAAGCCTTGTCCGAAAATAATAATAATGTGACTACGGGGCTGCCATCTGACAAGTACTTGAACTGTCCCTTCAAGGCTTGCGCGGCACGGTTGAACTTCGCTGAAGTACGGGATTATCTGTACATGATGAAAAAGAGAAGGCTACTACCTTCTGGATTTTGGAGCGGGTTTAACACCGAGAACAAGTATATGTGTCCTAGTTGCAACAGAGAATTTTGTATCAAGTGTAGGGTTCCTTACCATTCTGAATTCAATTGTTTTTTGTATCAGAAACTTAAGGTCAATGGAGGCGGTGAAGAAGGGATGGTGATGTACCTTGCAGGGATGAAACAATGGAAGCGGTGTCCATGCTGCAACTACTATGTGATAAAAGAGGACAGCAGCTGCAGCATTAACTACGTCACATGCTGGTGTGGACATACTTTCTGTTACTATTGTCTATTACCATCAGGTAGTCATCACCATGATAAAAGCAAATGTAAACCCATCTTCCCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030312 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0030838 GO:0031333 GO:0031334 GO:0032271 GO:0032272 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051130 GO:0051493 GO:0051494 GO:0051495 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04320 map04320

Pfam Domains

Protein Families

FH2

Protein Analysis

306

Amino Acids

35.01

Weight (kDa)

8.93

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25500
fragaria_vesca	FvH4_2g17360 FvH4_2g17360 FvH4_2g17360
malus_domestica	MD05G1152500.v1.1 MD10G1147000.v1.1
prunus_persica	Prupe.8G185400_v2.0.a1
pyrus_communis	pycom05g14690 pycom10g12670
rosa_chinensis	RchiOBHm_Chr6g0281991
rosa_laevigata	RLG00000012921
rosa_multiflora	Rmu_sc0000569.1_g000001 Rmu_sc0001255.1_g000001 Rmu_sc0011823.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186650
rosa_rugosa	Rorug06G0144700
rosa_samantha	Rh4CG162200 Rh4CG270300 Rh6AG257900 Rh6BG260900 Rh6CG259800 Rh6DG252200 Rh7AG416400
rosa_wichuraiana	Rw6G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	585
AccII	CGCG	1 cut(s)	503
AciI	CCGC	4 cut(s)	503, 585, 711, 760
AclWI	GGATC	2 cut(s)	94, 117
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	3 cut(s)	290, 632, 668
AcuI	CTGAAG	1 cut(s)	543
AfaI	GTAC	9 cut(s)	63, 145, 187, 355, 377, 476, 528, 542, 734
AfiI	CCNNNNNNNGG	2 cut(s)	250, 397
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	4 cut(s)	481, 493, 514, 673
AhdI	GACNNNNNGTC	1 cut(s)	322
AhlI	ACTAGT	2 cut(s)	146, 182
AjiI	CACGTC	1 cut(s)	324
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	2 cut(s)	307, 804
AluI	AGCT	2 cut(s)	307, 804
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	94, 117
AlwNI	CAGNNNCTG	1 cut(s)	804
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	6 cut(s)	128, 460, 771, 801, 804, 807
ApoI	RAATTY	3 cut(s)	290, 632, 668
AspLEI	GCGC	1 cut(s)	503
AsuC2I	CCSGG	2 cut(s)	338, 914
AsuHPI	GGTGA	3 cut(s)	725, 739, 872
AvaI	CYCGRG	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	338
BalI	TGGCCA	1 cut(s)	50
BbvI	GCAGC	6 cut(s)	115, 447, 758, 791, 813, 819
BccI	CCATC	6 cut(s)	97, 408, 472, 718, 874, 914
BcnI	CCSGG	2 cut(s)	338, 914
BcoDI	GTCTC	1 cut(s)	9
BcuI	ACTAGT	2 cut(s)	146, 182
BfaI	CTAG	3 cut(s)	147, 183, 618
BfmI	CTRYAG	2 cut(s)	349, 805
BfrI	CTTAAG	1 cut(s)	695
BglII	AGATCT	1 cut(s)	30
BisI	GCNGC	7 cut(s)	129, 461, 504, 772, 802, 805, 808
BlsI	GCNGC	7 cut(s)	130, 462, 505, 773, 803, 806, 809
BmcAI	AGTACT	4 cut(s)	145, 355, 377, 476
Bme1390I	CCNGG	2 cut(s)	338, 914
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	654
BmrFI	CCNGG	2 cut(s)	338, 914
BmsI	GCATC	2 cut(s)	115, 350
BpmI	CTGGAG	1 cut(s)	378
BpuMI	CCSGG	2 cut(s)	338, 914
Bsa29I	ATCGAT	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 397
Bse1I	ACTGG	1 cut(s)	361
BseCI	ATCGAT	1 cut(s)	412
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	3 cut(s)	406, 729, 750
BseLI	CCNNNNNNNGG	2 cut(s)	250, 397
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	6 cut(s)	115, 447, 758, 791, 813, 819
Bsh1236I	CGCG	1 cut(s)	503
BshFI	GGCC	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	338, 914
BslFI	GGGAC	2 cut(s)	258, 471
BslI	CCNNNNNNNGG	2 cut(s)	250, 397
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	258, 471
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	4 cut(s)	30, 86, 109, 409
BspACI	CCGC	4 cut(s)	503, 585, 711, 760
BspANI	GGCC	1 cut(s)	50
BspDI	ATCGAT	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	503
BspLI	GGNNCC	1 cut(s)	654
BspMAI	CTGCAG	2 cut(s)	353, 809
BspPI	GGATC	2 cut(s)	94, 117
BspTI	CTTAAG	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	9
BsrBI	CCGCTC	1 cut(s)	585
BsrGI	TGTACA	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	4 cut(s)	30, 86, 109, 409
BssT1I	CCWWGG	1 cut(s)	80
Bst4CI	ACNGT	3 cut(s)	164, 485, 510
Bst6I	CTCTTC	1 cut(s)	379
BstAFI	CTTAAG	1 cut(s)	695
BstAUI	TGTACA	1 cut(s)	540
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	1 cut(s)	918
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	3 cut(s)	406, 729, 750
BstFNI	CGCG	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	4 cut(s)	33, 89, 112, 412
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	30, 86, 109, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 807
BstNSI	RCATGY	2 cut(s)	40, 828
BstSCI	CCNGG	2 cut(s)	336, 912
BstSFI	CTRYAG	2 cut(s)	349, 805
BstSLI	GKGCMC	1 cut(s)	338
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	6 cut(s)	115, 447, 758, 791, 813, 819
BstX2I	RGATCY	2 cut(s)	30, 86
BstYI	RGATCY	2 cut(s)	30, 86
Bsu15I	ATCGAT	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	50
BsuTUI	ATCGAT	1 cut(s)	412
BtrI	CACGTC	1 cut(s)	324
BtsCI	GGATG	3 cut(s)	406, 729, 750
BtsIMutI	CAGTG	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	499
CaiI	CAGNNNCTG	1 cut(s)	804
CfoI	GCGC	1 cut(s)	503
ClaI	ATCGAT	1 cut(s)	412
Csp6I	GTAC	9 cut(s)	62, 144, 186, 354, 376, 475, 527, 541, 733
CviAII	CATG	8 cut(s)	37, 43, 122, 279, 544, 768, 825, 884
CviJI	RGCY	8 cut(s)	50, 307, 425, 460, 497, 562, 804, 917
CviKI_1	RGCY	8 cut(s)	50, 307, 425, 460, 497, 562, 804, 917
CviQI	GTAC	9 cut(s)	62, 144, 186, 354, 376, 475, 527, 541, 733
DdeI	CTNAG	1 cut(s)	918
DpnI	GATC	4 cut(s)	32, 88, 111, 411
DpnII	GATC	4 cut(s)	30, 86, 109, 409
DraI	TTTAAA	1 cut(s)	199
DriI	GACNNNNNGTC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	379
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	371
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	80
EcoT22I	ATGCAT	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	8 cut(s)	40, 46, 125, 282, 547, 771, 828, 887
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FaqI	GGGAC	2 cut(s)	258, 471
FatI	CATG	8 cut(s)	36, 42, 121, 278, 543, 767, 824, 883
FauI	CCCGC	1 cut(s)	578
Fnu4HI	GCNGC	7 cut(s)	129, 461, 504, 772, 802, 805, 808
FokI	GGATG	3 cut(s)	413, 736, 757
Fsp4HI	GCNGC	7 cut(s)	129, 461, 504, 772, 802, 805, 808
FspBI	CTAG	3 cut(s)	147, 183, 618
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	7 cut(s)	129, 461, 504, 772, 802, 805, 808
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	2 cut(s)	338, 914
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	8 cut(s)	40, 46, 125, 282, 547, 771, 828, 887
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HinfI	GANTC	1 cut(s)	387
HpaII	CCGG	2 cut(s)	338, 914
HphI	GGTGA	3 cut(s)	725, 739, 872
Hpy166II	GTNNAC	4 cut(s)	64, 152, 836, 902
Hpy188I	TCNGA	5 cut(s)	114, 433, 469, 667, 690
Hpy188III	TCNNGA	2 cut(s)	394, 573
Hpy8I	GTNNAC	4 cut(s)	64, 152, 836, 902
HpyAV	CCTTC	5 cut(s)	391, 499, 552, 579, 713
HpyCH4III	ACNGT	3 cut(s)	164, 485, 510
HpyCH4IV	ACGT	2 cut(s)	323, 819
HpyCH4V	TGCA	8 cut(s)	36, 258, 282, 351, 624, 740, 774, 807
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 807
HpyF3I	CTNAG	1 cut(s)	918
HpySE526I	ACGT	2 cut(s)	323, 819
Hsp92II	CATG	8 cut(s)	40, 46, 125, 282, 547, 771, 828, 887
HspAI	GCGC	1 cut(s)	501
Kzo9I	GATC	4 cut(s)	30, 86, 109, 409
LmnI	GCTCC	2 cut(s)	312, 582
LpnPI	CCDG	7 cut(s)	218, 342, 351, 558, 726, 814, 855
Lsp1109I	GCAGC	6 cut(s)	115, 447, 758, 791, 813, 819
LweI	GCATC	2 cut(s)	115, 350
MaeI	CTAG	3 cut(s)	147, 183, 618
MaeII	ACGT	2 cut(s)	323, 819
MaeIII	GTNAC	4 cut(s)	403, 448, 820, 848
MalI	GATC	4 cut(s)	32, 88, 111, 411
MbiI	CCGCTC	1 cut(s)	585
MboI	GATC	4 cut(s)	30, 86, 109, 409
MboII	GAAGA	5 cut(s)	16, 81, 396, 728, 901
MfeI	CAATTG	1 cut(s)	673
MflI	RGATCY	2 cut(s)	30, 86
MhlI	GDGCHC	1 cut(s)	338
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	4 cut(s)	290, 632, 668, 673
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	396
MnlI	CCTC	7 cut(s)	100, 211, 237, 380, 401, 701, 787
Mox20I	TGGCCA	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	50
MseI	TTAA	5 cut(s)	27, 198, 591, 696, 813
MslI	CAYNNNNRTG	3 cut(s)	41, 829, 882
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	804
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	2 cut(s)	338, 914
MspR9I	CCNGG	2 cut(s)	338, 914
MunI	CAATTG	1 cut(s)	673
Mva1269I	GAATGC	1 cut(s)	239
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	503, 807
NciI	CCSGG	2 cut(s)	338, 914
NdeII	GATC	4 cut(s)	30, 86, 109, 409
NlaIII	CATG	8 cut(s)	40, 46, 125, 282, 547, 771, 828, 887
NlaIV	GGNNCC	1 cut(s)	654
NmuCI	GTSAC	2 cut(s)	448, 820
NsiI	ATGCAT	1 cut(s)	284
NspI	RCATGY	2 cut(s)	40, 828
PaeR7I	CTCGAG	1 cut(s)	371
PctI	GAATGC	1 cut(s)	239
PkrI	GCNGC	7 cut(s)	130, 462, 505, 773, 803, 806, 809
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	654
PspXI	VCTCGAGB	1 cut(s)	371
PstI	CTGCAG	2 cut(s)	353, 809
PstNI	CAGNNNCTG	1 cut(s)	804
PsuI	RGATCY	2 cut(s)	30, 86
PvuII	CAGCTG	1 cut(s)	804
RsaI	GTAC	9 cut(s)	63, 145, 187, 355, 377, 476, 528, 542, 734
RsaNI	GTAC	9 cut(s)	62, 144, 186, 354, 376, 475, 527, 541, 733
RseI	CAYNNNNRTG	3 cut(s)	41, 829, 882
SaqAI	TTAA	5 cut(s)	27, 198, 591, 696, 813
SatI	GCNGC	7 cut(s)	129, 461, 504, 772, 802, 805, 808
Sau3AI	GATC	4 cut(s)	30, 86, 109, 409
ScaI	AGTACT	4 cut(s)	145, 355, 377, 476
SchI	GAGTC	1 cut(s)	396
ScrFI	CCNGG	2 cut(s)	338, 914
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	2 cut(s)	115, 350
SfcI	CTRYAG	2 cut(s)	349, 805
Sfr274I	CTCGAG	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	371
SmiI	ATTTAAAT	1 cut(s)	199
SmiMI	CAYNNNNRTG	3 cut(s)	41, 829, 882
SmlI	CTYRAG	2 cut(s)	371, 695
SmoI	CTYRAG	2 cut(s)	371, 695
SpeI	ACTAGT	2 cut(s)	146, 182
Sse9I	AATT	4 cut(s)	290, 632, 668, 673
SsiI	CCGC	4 cut(s)	503, 585, 711, 760
SspMI	CTAG	3 cut(s)	147, 183, 618
StyD4I	CCNGG	2 cut(s)	336, 912
StyI	CCWWGG	1 cut(s)	80
SwaI	ATTTAAAT	1 cut(s)	199
TaaI	ACNGT	3 cut(s)	164, 485, 510
TaiI	ACGT	2 cut(s)	326, 822
TaqI	TCGA	2 cut(s)	372, 412
TasI	AATT	4 cut(s)	290, 632, 668, 673
TatI	WGTACW	6 cut(s)	61, 143, 353, 375, 474, 540
TauI	GCSGC	1 cut(s)	506
Tru1I	TTAA	5 cut(s)	27, 198, 591, 696, 813
Tru9I	TTAA	5 cut(s)	27, 198, 591, 696, 813
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	448, 820
TseI	GCWGC	6 cut(s)	128, 460, 771, 801, 804, 807
Tsp45I	GTSAC	2 cut(s)	448, 820
TspDTI	ATGAA	3 cut(s)	17, 563, 761
TspRI	CASTG	1 cut(s)	159
Vha464I	CTTAAG	1 cut(s)	695
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	3 cut(s)	290, 632, 668
XceI	RCATGY	2 cut(s)	40, 828
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	371
XspI	CTAG	3 cut(s)	147, 183, 618
ZrmI	AGTACT	4 cut(s)	145, 355, 377, 476
Zsp2I	ATGCAT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.