Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007674

Physical Location & Seq

Genomic Coordinates Forward (+)

44090308 .. 44094145

Gene Structure 3838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG252200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3354 bp

ATGCCCTCCTCCTCCTTCTTCTTCCTCCTGCTCTTTCTATTCTGCGCACTACCCTTTGTAGCCCCTAGCCGGCGGATCCTCCACCAGCCATTGTTACCCCAAGATTCTCTTCCTCCTGCTCCGCCTCCGGCTCCGTCTCCGCCTTCTCTGCCTCCCAACCCGAATCCCAAGTACCCATTTTCAACTTCCAATTCTACCCCTCCAGATTCTCCCTTTTTCCCAACCTACCCCGCCCCGCCTCCTCCTCCCTCTTCCCCGGCCACATTCGCCTCCTTCCCGGCCAACATCTCCTCCCTCATTCTCCCCCAGGCACCTGCCTCCAACTCCAAATCCCACAAGCTCGTTGCCCTCGCCGTCTGCGCCGCCATCTCCGCCGTCATCGCCGTCGCCTCCGCCGTCATCGTCCTCTGCCGTCGCCGGCGCAACAACAACCGCAACTTCCCCGATGAAGACGACAAGACCTATAGATCCGAGCAGAGCAACCGCTTCTTTCAGGCCAGCAATGCTCGCTCCAGCAGCGGGGCCCACAAGCTCCGGACCGGCTCCTCCACCAGCTCCGAGTTCCTCTACCTCGGCACGGTCGTCAACTCCCGCGGAATCGACGAGCGCGTGAGCTCACGCGGCAGCGCCGGCGGCGCGTTGGAGAATCGGAAGGTCGACTCGCCGGACCTCCAGCCGCTCCCGCCTCTGTCCCGGCAGTGCTCCAAGCTGAGTAATTGCACCAATGCTGAATCGGCCGAACCGGCTCGGACCGGAGACGAGGAAGAGGACGAGGAAGAGGAGTTTTACTCGCCGAGAGGATCTTCCGGTGACCGTGAAAGCTTCAATGGAGCTGGATCGGGGTCTCGGAGACTATTCGCCGCCGTGGTGGCCGGTGATCTCGAGGAAAGAAACAGCGAAACGACGTCGTGCTCGTGCTCGTCTTCAAATTCCGGTTCACCGGCTCGGTCACACTCTATCAGTCTATCTCCGGCGGTCAGTGTAAGTCCGAGAAGACCATCACTACCCAAATCTCCCGAGTCTTCTGTTATGCAGCCTCTGCCTTCACAGCCACTGCCAGCTGAGCCTCGTTATCCGACGCCGTTTGGTTTCGACACGGTGTCTCGTTCCCCATCTTCGTCGCCGCCGGTGAGACTACTGGAGAATATTCCGGAATCCTCACCGAGAAGGTCGAGCGTTTCGCAGCAGAATCTGCGGTCGCCTTCGCTGAGTCCAATGTCTTCGCCGGGGAGAGCTGTGGAGGAATACCCATCTGCATCTTCGGATCGAAACCCGGCCGGGTCTCCTTCAATGTCTTCACTTACTTCGTCACCGGAGAGAGATTTGGAGAAGGAGGCAGATGCGTCTCCAAAAGTTTCGGTCTTTTCGAATCAAAGTTCTCCAATTTATTTACCACCGAAAGCTTCAGCGTTTTCACTATCTTCAAGCTGCTCGTCTTCACCGGATAGAGTATCAAATGCTTCTGATGAAAAGGCTAAGTCTCCGTCAGATGGGTCCATGTCACCCGAGAGAGGTTTGGAGAAGAGCCCAGTTGCATCGCCAAGAACTTCAAATGCTTCTGATCGATCATTTATTCATTTGGATCCAAAGAGGCAGTCTTTTTCGTCGGCTTCTTCGGTGTCTTCTTCACCGGAGAGAGAGTTGGGGAACAATTCAGATGCATCACCGAAAGTCTCCAATGTTTCTAATCGTATTGAAGAATCTTCATCTAGACTTAATGGGGCTTTGAAGATGCCTCTTTCGATACCGCCACCTCCTCCGCCTCCACTGCCTCCTTCACTAAGACTGTGGGAGACTCCAAGTCCTAAAACACCAGCTGGCCAACCAATCTCGAGACCTCCAGCACTTATACCTCCTTCAAGGCCTTTCGTGTTTCAAAACCCAGGGAAGGTCTCTGTTTCACCAGTGCAGCTGCCACCGAGTTCTGCACCATTGGAGCCTATTGAGGAGACTCCGAAACCCAAGTTAAAGCCATTGCATTGGGATAAAGTTAGAGCTAGCTCTGACCGTGAAATGGTGTGGGATCAGCTAAGATCAAGCTCTTTCAAATTGAATGAAGAAATGATAGAGACATTGTTCGTTGTAAATACACCCAAACCGAATCCAAAGGAAACAACCCCACGCCCGGTTATTCCCTCACCTAAGCAAGAGAACAGAGTACTCGATCCTAAAAAGTCCCAGAATATTGCAATTTTGCTCAGGGCACTCAATGTGACCATAGAAGAAGTTTGTGAAGCGCTAATAGAAGGTAATGCAGATGCTCTTGGAACTGAATTACTTGAAAGTCTATTGAAGATGGCTCCAACCAAAGAAGAAGAGCGTAAGCTGAAGGAGTACAAAGATGATTCACCAGTTAAGCTTGGCCCTGCTGAGAAATTTCTGAAAGAACTTCTTGATGTTCCTTTTGCATTTAAAAGGATCGAGGCAATGCTTTACATGACTAATTTTGAATCTGAAATCGAATACCTGAAAAAGTCTTTCGAAACTCTAGAGGCTGCCTGTGAAGAATTGAGAAATAGTAGGATGTTCTTGAAGCTTTTAGAGGCTGTGCTCAAGACTGGAAACAGAATGAATGTTGGGACAAACCGCGGTGATGCCCATGCCTTCAAACTTGACACACTCCTCAAGCTTGCCGATGTTAAGGGAGCAGATGGGAAAACCACACTTTTGCATTTTGTTGTACAAGAAATCATAAGAACTGAAGGTGCTCGTCTCATTGGTGGTCAAACTTCATCAAACACAGCTTTGAATGACGATGCCAAGTGTAGGAGACTTGGCCTGCCAGTTGTTTCAGGTCTCAGTTCAGACCTCACTAATGTCAAGAAAGCTGCTGCCATGGACTCCGATGTGCTTAGCGGTGAAGTTTTTAAGCTTTCTAGAGGTATTAGCAACATTGGGGAGGTTGTGCAGTTAGCTGAGAGAAAGGTGTCAGGTGGAAGCAGCGGGAAATTTGCAGAGTCCATGACCATGTTCATGAAAATGGCCGAGGAGGAGATTATAAGACTTCAAGCTCAAGAAAGTGTTGCTCTGTCCTTGGTGAAGGAGATCACGGAGTACTTCCATGGGAATTCCGCTAGGGAAGAAGCTCACCCATTTCGAATCTTCATGGTAGTGAGAGACTTTCTAACAGTTCTTGATCGGGTATGTAAGGAAGTTGGTCTGATAAACGAGCAAACCATTGTTAGTAATGCCCAAAAGTTCCCAGTTCCTGTAAATCCCATGCTACAGCAACAAGTATTTCCAGTAAACCCAATGCTACCGCAAGTTCATCCTGTAAACCCAATGCTACCGCAAGTTCTCCCTGGAATCCATGGCAGGCGACCCTACGATTCATCTGATGATGAGAGTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030312 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0030838 GO:0031333 GO:0031334 GO:0032271 GO:0032272 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051130 GO:0051493 GO:0051494 GO:0051495 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04320 map04320

Pfam Domains

Protein Families

FH2

Protein Analysis

1117

Amino Acids

121.14

Weight (kDa)

7.18

Isoelectric Point (pI)

77.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FH2	PF02181	650 - 1045	4.5e-123	Formin Homology 2 Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25500
fragaria_vesca	FvH4_2g17360 FvH4_2g17360 FvH4_2g17360
malus_domestica	MD05G1152500.v1.1 MD10G1147000.v1.1
prunus_persica	Prupe.8G185400_v2.0.a1
pyrus_communis	pycom05g14690 pycom10g12670
rosa_chinensis	RchiOBHm_Chr6g0281991
rosa_laevigata	RLG00000012921
rosa_multiflora	Rmu_sc0000569.1_g000001 Rmu_sc0001255.1_g000001 Rmu_sc0011823.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186650
rosa_rugosa	Rorug06G0144700
rosa_samantha	Rh4CG162200 Rh4CG270300 Rh6AG257900 Rh6BG260900 Rh6CG259800 Rh6DG252200 Rh7AG416400
rosa_wichuraiana	Rw6G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2999
AarI	CACCTGC	1 cut(s)	322
AatII	GACGTC	1 cut(s)	908
Acc16I	TGCGCA	1 cut(s)	46
Acc36I	ACCTGC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	657
AccII	CGCG	5 cut(s)	594, 609, 621, 638, 2589
AccIII	TCCGGA	2 cut(s)	534, 1150
AcoI	YGGCCR	7 cut(s)	258, 279, 735, 870, 1275, 1819, 2982
AcsI	RAATTY	4 cut(s)	928, 2375, 2948, 3067
AcuI	CTGAAG	3 cut(s)	1389, 2348, 2721
AcyI	GRCGYC	2 cut(s)	905, 1079
AfaI	GTAC	6 cut(s)	173, 2160, 2336, 2682, 3056, 3349
AfeI	AGCGCT	1 cut(s)	2238
AfiI	CCNNNNNNNGG	9 cut(s)	69, 519, 577, 1490, 1511, 1888, 2014, 2125, 2766
AhdI	GACNNNNNGTC	2 cut(s)	1099, 1800
AjnI	CCWGG	3 cut(s)	306, 1882, 3301
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
Alw21I	GWGCWC	6 cut(s)	617, 704, 914, 920, 2553, 2710
AlwNI	CAGNNNCTG	4 cut(s)	1039, 1054, 1192, 3209
Ama87I	CYCGRG	4 cut(s)	881, 1016, 1505, 1831
Aor13HI	TCCGGA	2 cut(s)	534, 1150
Aor51HI	AGCGCT	1 cut(s)	2238
ApaI	GGGCCC	1 cut(s)	526
ApoI	RAATTY	4 cut(s)	928, 2375, 2948, 3067
ArsI	GACNNNNNNTTYG	2 cut(s)	1580, 1612
AspLEI	GCGC	7 cut(s)	47, 362, 423, 609, 629, 638, 2239
AspS9I	GGNCC	7 cut(s)	522, 523, 537, 667, 750, 1494, 2363
AsuC2I	CCSGG	7 cut(s)	257, 278, 694, 1227, 1274, 1279, 2126
AsuII	TTCGAA	3 cut(s)	1367, 2481, 3097
AsuNHI	GCTAGC	1 cut(s)	1997
AvaI	CYCGRG	4 cut(s)	881, 1016, 1505, 1831
AvaII	GGWCC	4 cut(s)	537, 667, 750, 1494
BaeGI	GKGCMC	2 cut(s)	526, 2206
BalI	TGGCCA	1 cut(s)	1821
BamHI	GGATCC	2 cut(s)	75, 1582
BanI	GGYRCC	1 cut(s)	310
BanII	GRGCYC	3 cut(s)	526, 617, 1529
BauI	CACGAG	1 cut(s)	913
BbsI	GAAGAC	8 cut(s)	456, 915, 1000, 1014, 1212, 1287, 1428, 1614
Bbv12I	GWGCWC	6 cut(s)	617, 704, 914, 920, 2553, 2710
BccI	CCATC	7 cut(s)	374, 1006, 1120, 1258, 1484, 2290, 2645
BceAI	ACGGC	7 cut(s)	338, 359, 368, 380, 396, 848, 1066
BciT130I	CCWGG	3 cut(s)	308, 1884, 3303
BcnI	CCSGG	7 cut(s)	257, 278, 694, 1227, 1274, 1279, 2126
BfaI	CTAG	6 cut(s)	66, 1710, 1998, 2489, 2877, 3075
BfmI	CTRYAG	2 cut(s)	463, 3224
BfoI	RGCGCY	2 cut(s)	630, 2240
BfuAI	ACCTGC	1 cut(s)	322
BglI	GCCNNNNNGGC	2 cut(s)	743, 869
BlpI	GCTNAGC	2 cut(s)	1062, 2852
BmcAI	AGTACT	2 cut(s)	2160, 3056
Bme18I	GGWCC	4 cut(s)	537, 667, 750, 1494
BmeRI	GACNNNNNGTC	2 cut(s)	1099, 1800
BmeT110I	CYCGRG	4 cut(s)	881, 1016, 1505, 1831
BmgT120I	GGNCC	7 cut(s)	522, 523, 537, 667, 750, 1494, 2363
BmrI	ACTGGG	2 cut(s)	1523, 3197
BmsI	GCATC	9 cut(s)	1265, 1330, 1544, 1648, 1670, 1722, 2248, 2584, 2746
BmtI	GCTAGC	1 cut(s)	2001
BmuI	ACTGGG	2 cut(s)	1523, 3197
BpiI	GAAGAC	8 cut(s)	456, 915, 1000, 1014, 1212, 1287, 1428, 1614
BplI	GAGNNNNNCTC	2 cut(s)	773, 805
BpmI	CTGGAG	5 cut(s)	186, 496, 656, 1160, 1824
Bpu10I	CCTNAGC	2 cut(s)	2142, 2198
Bpu1102I	GCTNAGC	2 cut(s)	1062, 2852
Bpu14I	TTCGAA	3 cut(s)	1367, 2481, 3097
BpuEI	CTTGAG	3 cut(s)	2537, 2609, 2997
BpuMI	CCSGG	7 cut(s)	257, 278, 694, 1227, 1274, 1279, 2126
Bsa29I	ATCGAT	1 cut(s)	1564
BsaAI	YACGTR	1 cut(s)	3351
BsaHI	GRCGYC	2 cut(s)	905, 1079
BsaI	GGTCTC	5 cut(s)	849, 1287, 1828, 1897, 2801
BsaWI	WCCGGW	8 cut(s)	534, 752, 806, 932, 1150, 1312, 1441, 1630
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 1625, 1655
Bsc4I	CCNNNNNNNGG	9 cut(s)	69, 519, 577, 1490, 1511, 1888, 2014, 2125, 2766
Bse118I	RCCGGY	8 cut(s)	69, 417, 539, 629, 742, 872, 940, 1126
Bse1I	ACTGG	8 cut(s)	1143, 1529, 1904, 2351, 2563, 2783, 3203, 3242
Bse3DI	GCAATG	3 cut(s)	508, 1973, 2433
BseAI	TCCGGA	2 cut(s)	534, 1150
BseBI	CCWGG	3 cut(s)	308, 1884, 3303
BseCI	ATCGAT	1 cut(s)	1564
BseGI	GGATG	2 cut(s)	2529, 3268
BseLI	CCNNNNNNNGG	9 cut(s)	69, 519, 577, 1490, 1511, 1888, 2014, 2125, 2766
BseMI	GCAATG	3 cut(s)	508, 1973, 2433
BseMII	CTCAG	7 cut(s)	701, 1053, 1199, 2212, 2361, 2812, 2907
BseNI	ACTGG	8 cut(s)	1143, 1529, 1904, 2351, 2563, 2783, 3203, 3242
BseSI	GKGCMC	2 cut(s)	526, 2206
BseX3I	CGGCCG	2 cut(s)	735, 1275
BsgI	GTGCAG	3 cut(s)	1911, 1928, 2927
Bsh1236I	CGCG	5 cut(s)	594, 609, 621, 638, 2589
Bsh1285I	CGRYCG	4 cut(s)	582, 738, 1199, 1278
BshNI	GGYRCC	1 cut(s)	310
BshVI	ATCGAT	1 cut(s)	1564
BsiEI	CGRYCG	4 cut(s)	582, 738, 1199, 1278
BsiHKAI	GWGCWC	6 cut(s)	617, 704, 914, 920, 2553, 2710
BsiHKCI	CYCGRG	4 cut(s)	881, 1016, 1505, 1831
BslFI	GGGAC	3 cut(s)	676, 2161, 2593
BslI	CCNNNNNNNGG	9 cut(s)	69, 519, 577, 1490, 1511, 1888, 2014, 2125, 2766
BsmBI	CGTCTC	4 cut(s)	141, 750, 1350, 2717
BsmFI	GGGAC	3 cut(s)	676, 2161, 2593
Bso31I	GGTCTC	5 cut(s)	849, 1287, 1828, 1897, 2801
BsoBI	CYCGRG	4 cut(s)	881, 1016, 1505, 1831
Bsp119I	TTCGAA	3 cut(s)	1367, 2481, 3097
Bsp120I	GGGCCC	1 cut(s)	522
Bsp1286I	GDGCHC	9 cut(s)	526, 617, 704, 914, 920, 1529, 2206, 2553, 2710
Bsp13I	TCCGGA	2 cut(s)	534, 1150
Bsp1407I	TGTACA	1 cut(s)	2680
Bsp1720I	GCTNAGC	2 cut(s)	1062, 2852
Bsp19I	CCATGG	3 cut(s)	2835, 3061, 3310
BspCNI	CTCAG	7 cut(s)	702, 1054, 1200, 2211, 2362, 2811, 2908
BspDI	ATCGAT	1 cut(s)	1564
BspEI	TCCGGA	2 cut(s)	534, 1150
BspFNI	CGCG	5 cut(s)	594, 609, 621, 638, 2589
BspHI	TCATGA	1 cut(s)	2973
BspMI	ACCTGC	1 cut(s)	322
BspOI	GCTAGC	1 cut(s)	2001
BspQI	GCTCTTC	2 cut(s)	1517, 2310
BspT104I	TTCGAA	3 cut(s)	1367, 2481, 3097
BspT107I	GGYRCC	1 cut(s)	310
BspTNI	GGTCTC	5 cut(s)	849, 1287, 1828, 1897, 2801
BsrBI	CCGCTC	1 cut(s)	679
BsrDI	GCAATG	3 cut(s)	508, 1973, 2433
BsrFI	RCCGGY	8 cut(s)	69, 417, 539, 629, 742, 872, 940, 1126
BsrGI	TGTACA	1 cut(s)	2680
BsrI	ACTGG	8 cut(s)	1143, 1529, 1904, 2351, 2563, 2783, 3203, 3242
BssAI	RCCGGY	8 cut(s)	69, 417, 539, 629, 742, 872, 940, 1126
BssNI	GRCGYC	2 cut(s)	905, 1079
BssSI	CACGAG	1 cut(s)	913
BssT1I	CCWWGG	4 cut(s)	2835, 3033, 3061, 3310
Bst2BI	CACGAG	1 cut(s)	913
Bst2UI	CCWGG	3 cut(s)	308, 1884, 3303
Bst4CI	ACNGT	6 cut(s)	580, 815, 1099, 1788, 2009, 3130
Bst6I	CTCTTC	6 cut(s)	114, 256, 759, 771, 1517, 2310
BstACI	GRCGYC	2 cut(s)	905, 1079
BstAPI	GCANNNNNTGC	2 cut(s)	1039, 1192
BstAUI	TGTACA	1 cut(s)	2680
BstBAI	YACGTR	1 cut(s)	3351
BstBI	TTCGAA	3 cut(s)	1367, 2481, 3097
BstDSI	CCRYGG	6 cut(s)	592, 864, 2587, 2835, 3061, 3310
BstEII	GGTNACC	1 cut(s)	809
BstF5I	GGATG	2 cut(s)	2529, 3268
BstFNI	CGCG	5 cut(s)	594, 609, 621, 638, 2589
BstH2I	RGCGCY	2 cut(s)	630, 2240
BstHHI	GCGC	7 cut(s)	47, 362, 423, 609, 629, 638, 2239
BstMCI	CGRYCG	4 cut(s)	582, 738, 1199, 1278
BstNI	CCWGG	3 cut(s)	308, 1884, 3303
BstPI	GGTNACC	1 cut(s)	809
BstSFI	CTRYAG	2 cut(s)	463, 3224
BstSLI	GKGCMC	2 cut(s)	526, 2206
BstSNI	TACGTA	1 cut(s)	3351
BstUI	CGCG	5 cut(s)	594, 609, 621, 638, 2589
BstV2I	GAAGAC	8 cut(s)	456, 915, 1000, 1014, 1212, 1287, 1428, 1614
BstX2I	RGATCY	4 cut(s)	75, 467, 800, 1582
BstXI	CCANNNNNNTGG	1 cut(s)	1980
BstYI	RGATCY	4 cut(s)	75, 467, 800, 1582
BstZI	CGGCCG	2 cut(s)	735, 1275
Bsu15I	ATCGAT	1 cut(s)	1564
BsuTUI	ATCGAT	1 cut(s)	1564
BtgI	CCRYGG	6 cut(s)	592, 864, 2587, 2835, 3061, 3310
BtgZI	GCGATG	2 cut(s)	364, 1521
BtsCI	GGATG	2 cut(s)	2529, 3268
BtsI	GCAGTG	3 cut(s)	704, 1052, 1766
BtsIMutI	CAGTG	5 cut(s)	704, 985, 1052, 1766, 1911
BveI	ACCTGC	1 cut(s)	322
CaiI	CAGNNNCTG	4 cut(s)	1039, 1054, 1192, 3209
CciI	TCATGA	1 cut(s)	2973
CfoI	GCGC	7 cut(s)	47, 362, 423, 609, 629, 638, 2239
Cfr10I	RCCGGY	8 cut(s)	69, 417, 539, 629, 742, 872, 940, 1126
Cfr13I	GGNCC	7 cut(s)	522, 523, 537, 667, 750, 1494, 2363
Cfr42I	CCGCGG	2 cut(s)	595, 2590
ClaI	ATCGAT	1 cut(s)	1564
CpoI	CGGWCCG	2 cut(s)	537, 750
CseI	GACGC	2 cut(s)	1087, 1332
Csp6I	GTAC	6 cut(s)	172, 2159, 2335, 2681, 3055, 3348
CspI	CGGWCCG	2 cut(s)	537, 750
CviQI	GTAC	6 cut(s)	172, 2159, 2335, 2681, 3055, 3348
DraI	TTTAAA	1 cut(s)	2413
DriI	GACNNNNNGTC	2 cut(s)	1099, 1800
EaeI	YGGCCR	7 cut(s)	258, 279, 735, 870, 1275, 1819, 2982
EagI	CGGCCG	2 cut(s)	735, 1275
Eam1104I	CTCTTC	6 cut(s)	114, 256, 759, 771, 1517, 2310
Eam1105I	GACNNNNNGTC	2 cut(s)	1099, 1800
EarI	CTCTTC	6 cut(s)	114, 256, 759, 771, 1517, 2310
EciI	GGCGGA	6 cut(s)	88, 111, 129, 361, 382, 1749
Ecl136II	GAGCTC	1 cut(s)	615
EclXI	CGGCCG	2 cut(s)	735, 1275
Eco105I	TACGTA	1 cut(s)	3351
Eco130I	CCWWGG	4 cut(s)	2835, 3033, 3061, 3310
Eco147I	AGGCCT	1 cut(s)	1864
Eco24I	GRGCYC	3 cut(s)	526, 617, 1529
Eco31I	GGTCTC	5 cut(s)	849, 1287, 1828, 1897, 2801
Eco47I	GGWCC	4 cut(s)	537, 667, 750, 1494
Eco47III	AGCGCT	1 cut(s)	2238
Eco52I	CGGCCG	2 cut(s)	735, 1275
Eco53kI	GAGCTC	1 cut(s)	615
Eco57I	CTGAAG	3 cut(s)	1389, 2348, 2721
Eco88I	CYCGRG	4 cut(s)	881, 1016, 1505, 1831
Eco91I	GGTNACC	1 cut(s)	809
EcoICRI	GAGCTC	1 cut(s)	615
EcoO109I	RGGNCCY	1 cut(s)	522
EcoO65I	GGTNACC	1 cut(s)	809
EcoRI	GAATTC	1 cut(s)	3067
EcoRII	CCWGG	3 cut(s)	306, 1882, 3301
EcoT14I	CCWWGG	4 cut(s)	2835, 3033, 3061, 3310
EcoT22I	ATGCAT	1 cut(s)	1663
EcoT38I	GRGCYC	3 cut(s)	526, 617, 1529
ErhI	CCWWGG	4 cut(s)	2835, 3033, 3061, 3310
Esp3I	CGTCTC	4 cut(s)	141, 750, 1350, 2717
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 2376, 2408
FaqI	GGGAC	3 cut(s)	676, 2161, 2593
FauI	CCCGC	6 cut(s)	238, 243, 512, 599, 690, 2936
FblI	GTMKAC	1 cut(s)	657
FokI	GGATG	2 cut(s)	2536, 3255
FriOI	GRGCYC	3 cut(s)	526, 617, 1529
FspBI	CTAG	6 cut(s)	66, 1710, 1998, 2489, 2877, 3075
FspI	TGCGCA	1 cut(s)	46
GlaI	GCGC	7 cut(s)	46, 361, 422, 608, 628, 637, 2238
GsuI	CTGGAG	5 cut(s)	186, 496, 656, 1160, 1824
HaeII	RGCGCY	2 cut(s)	630, 2240
HgaI	GACGC	2 cut(s)	1087, 1332
HhaI	GCGC	7 cut(s)	47, 362, 423, 609, 629, 638, 2239
Hin1I	GRCGYC	2 cut(s)	905, 1079
Hin6I	GCGC	7 cut(s)	45, 360, 421, 607, 627, 636, 2237
HinP1I	GCGC	7 cut(s)	45, 360, 421, 607, 627, 636, 2237
HincII	GTYRAC	2 cut(s)	586, 658
HindII	GTYRAC	2 cut(s)	586, 658
HindIII	AAGCTT	6 cut(s)	820, 1401, 2357, 2534, 2627, 2870
Hpy166II	GTNNAC	5 cut(s)	586, 658, 938, 3247, 3277
Hpy8I	GTNNAC	5 cut(s)	586, 658, 938, 3247, 3277
Hpy99I	CGWCG	8 cut(s)	389, 417, 605, 907, 910, 1081, 1123, 1609
HpyCH4III	ACNGT	6 cut(s)	580, 815, 1099, 1788, 2009, 3130
HpyCH4IV	ACGT	2 cut(s)	905, 3350
HpySE526I	ACGT	2 cut(s)	905, 3350
Hsp92I	GRCGYC	2 cut(s)	905, 1079
HspAI	GCGC	7 cut(s)	45, 360, 421, 607, 627, 636, 2237
Kpn2I	TCCGGA	2 cut(s)	534, 1150
KroI	GCCGGC	3 cut(s)	69, 417, 629
KroNI	GCCGGC	3 cut(s)	71, 419, 631
KspI	CCGCGG	2 cut(s)	595, 2590
LguI	GCTCTTC	2 cut(s)	1517, 2310
LweI	GCATC	9 cut(s)	1265, 1330, 1544, 1648, 1670, 1722, 2248, 2584, 2746
MaeI	CTAG	6 cut(s)	66, 1710, 1998, 2489, 2877, 3075
MaeII	ACGT	2 cut(s)	905, 3350
MaeIII	GTNAC	6 cut(s)	93, 809, 948, 1308, 1500, 2212
MbiI	CCGCTC	1 cut(s)	679
MflI	RGATCY	4 cut(s)	75, 467, 800, 1582
MhlI	GDGCHC	9 cut(s)	526, 617, 704, 914, 920, 1529, 2206, 2553, 2710
MlsI	TGGCCA	1 cut(s)	1821
MluNI	TGGCCA	1 cut(s)	1821
MlyI	GAGTC	7 cut(s)	653, 1028, 1219, 1789, 1945, 2834, 2966
MmeI	TCCRAC	4 cut(s)	345, 621, 1100, 2327
Mox20I	TGGCCA	1 cut(s)	1821
Mph1103I	ATGCAT	1 cut(s)	1663
MreI	CGCCGGCG	2 cut(s)	417, 629
MroI	TCCGGA	2 cut(s)	534, 1150
MroNI	GCCGGC	3 cut(s)	69, 417, 629
MscI	TGGCCA	1 cut(s)	1821
MseI	TTAA	6 cut(s)	1716, 1967, 2355, 2412, 2640, 2868
MslI	CAYNNNNRTG	4 cut(s)	2966, 2972, 2978, 3110
Msp20I	TGGCCA	1 cut(s)	1821
MspA1I	CMGCKG	7 cut(s)	519, 594, 1061, 1817, 1912, 2589, 2943
MvaI	CCWGG	3 cut(s)	308, 1884, 3303
MvnI	CGCG	5 cut(s)	594, 609, 621, 638, 2589
NaeI	GCCGGC	3 cut(s)	71, 419, 631
NciI	CCSGG	7 cut(s)	257, 278, 694, 1227, 1274, 1279, 2126
NcoI	CCATGG	3 cut(s)	2835, 3061, 3310
NgoMIV	GCCGGC	3 cut(s)	69, 417, 629
NheI	GCTAGC	1 cut(s)	1997
NmeAIII	GCCGAG	3 cut(s)	552, 819, 3010
NmuCI	GTSAC	5 cut(s)	809, 948, 1308, 1500, 2212
NsbI	TGCGCA	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	1663
NspV	TTCGAA	3 cut(s)	1367, 2481, 3097
PaeR7I	CTCGAG	2 cut(s)	881, 1831
PagI	TCATGA	1 cut(s)	2973
PaqCI	CACCTGC	1 cut(s)	322
PasI	CCCWGGG	1 cut(s)	1883
PceI	AGGCCT	1 cut(s)	1864
PciSI	GCTCTTC	2 cut(s)	1517, 2310
PcsI	WCGNNNNNNNCGW	5 cut(s)	393, 579, 606, 911, 1364
PdiI	GCCGGC	3 cut(s)	71, 419, 631
PleI	GAGTC	7 cut(s)	653, 1027, 1218, 1789, 1945, 2834, 2965
PpsI	GAGTC	7 cut(s)	653, 1027, 1218, 1789, 1945, 2834, 2965
Ppu21I	YACGTR	1 cut(s)	3351
PsiI	TTATAA	1 cut(s)	2999
Psp124BI	GAGCTC	1 cut(s)	617
Psp6I	CCWGG	3 cut(s)	306, 1882, 3301
PspEI	GGTNACC	1 cut(s)	809
PspGI	CCWGG	3 cut(s)	306, 1882, 3301
PspOMI	GGGCCC	1 cut(s)	522
PspPI	GGNCC	7 cut(s)	522, 523, 537, 667, 750, 1494, 2363
PstNI	CAGNNNCTG	4 cut(s)	1039, 1054, 1192, 3209
PsuI	RGATCY	4 cut(s)	75, 467, 800, 1582
PvuII	CAGCTG	3 cut(s)	1061, 1817, 1912
RsaI	GTAC	6 cut(s)	173, 2160, 2336, 2682, 3056, 3349
RsaNI	GTAC	6 cut(s)	172, 2159, 2335, 2681, 3055, 3348
RseI	CAYNNNNRTG	4 cut(s)	2966, 2972, 2978, 3110
Rsr2I	CGGWCCG	2 cut(s)	537, 750
RsrII	CGGWCCG	2 cut(s)	537, 750
SacI	GAGCTC	1 cut(s)	617
SacII	CCGCGG	2 cut(s)	595, 2590
SalI	GTCGAC	1 cut(s)	656
SapI	GCTCTTC	2 cut(s)	1517, 2310
SaqAI	TTAA	6 cut(s)	1716, 1967, 2355, 2412, 2640, 2868
Sau96I	GGNCC	7 cut(s)	522, 523, 537, 667, 750, 1494, 2363
ScaI	AGTACT	2 cut(s)	2160, 3056
SchI	GAGTC	7 cut(s)	653, 1028, 1219, 1789, 1945, 2834, 2966
SduI	GDGCHC	9 cut(s)	526, 617, 704, 914, 920, 1529, 2206, 2553, 2710
SfaNI	GCATC	9 cut(s)	1265, 1330, 1544, 1648, 1670, 1722, 2248, 2584, 2746
SfcI	CTRYAG	2 cut(s)	463, 3224
Sfr274I	CTCGAG	2 cut(s)	881, 1831
Sfr303I	CCGCGG	2 cut(s)	595, 2590
SfuI	TTCGAA	3 cut(s)	1367, 2481, 3097
SgrAI	CRCCGGYG	3 cut(s)	417, 629, 1126
SgrBI	CCGCGG	2 cut(s)	595, 2590
SinI	GGWCC	4 cut(s)	537, 667, 750, 1494
SlaI	CTCGAG	2 cut(s)	881, 1831
SmiMI	CAYNNNNRTG	4 cut(s)	2966, 2972, 2978, 3110
SmlI	CTYRAG	5 cut(s)	881, 1831, 2552, 2624, 3012
SmoI	CTYRAG	5 cut(s)	881, 1831, 2552, 2624, 3012
SnaBI	TACGTA	1 cut(s)	3351
SseBI	AGGCCT	1 cut(s)	1864
SspI	AATATT	2 cut(s)	1147, 2185
SspMI	CTAG	6 cut(s)	66, 1710, 1998, 2489, 2877, 3075
SstI	GAGCTC	1 cut(s)	617
StuI	AGGCCT	1 cut(s)	1864
StyI	CCWWGG	4 cut(s)	2835, 3033, 3061, 3310
TaaI	ACNGT	6 cut(s)	580, 815, 1099, 1788, 2009, 3130
TaiI	ACGT	2 cut(s)	908, 3353
TaqII	GACCGA	2 cut(s)	936, 1348
TatI	WGTACW	4 cut(s)	2158, 2334, 2680, 3054
TauI	GCSGC	6 cut(s)	365, 624, 636, 679, 863, 1126
Tru1I	TTAA	6 cut(s)	1716, 1967, 2355, 2412, 2640, 2868
Tru9I	TTAA	6 cut(s)	1716, 1967, 2355, 2412, 2640, 2868
TscAI	CASTG	5 cut(s)	704, 985, 1059, 1773, 1911
TseFI	GTSAC	5 cut(s)	809, 948, 1308, 1500, 2212
Tsp45I	GTSAC	5 cut(s)	809, 948, 1308, 1500, 2212
TspGWI	ACGGA	3 cut(s)	123, 1473, 3065
TspRI	CASTG	5 cut(s)	704, 985, 1059, 1773, 1911
VpaK11BI	GGWCC	4 cut(s)	537, 667, 750, 1494
XapI	RAATTY	4 cut(s)	928, 2375, 2948, 3067
XbaI	TCTAGA	3 cut(s)	1709, 2488, 2876
XhoI	CTCGAG	2 cut(s)	881, 1831
XmiI	GTMKAC	1 cut(s)	657
XspI	CTAG	6 cut(s)	66, 1710, 1998, 2489, 2877, 3075
ZraI	GACGTC	1 cut(s)	906
ZrmI	AGTACT	2 cut(s)	2160, 3056
Zsp2I	ATGCAT	1 cut(s)	1663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.