Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007674

Physical Location & Seq

Genomic Coordinates Reverse (-)

52483403 .. 52484241

Gene Structure 839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG270300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCAGCCTCTGCCTTCACAGCCACAGCCAGCAGAGCCTCATTATCTGACGCCGTTTGGTTTCGAAACGGTGTCTCGTTCCCCATCTTCGTCGCCGCCGGTGAGACTACTGGAGAATATTCCGGAATCCTCACTGAGAAGGTCGAGCGTTTCGCAGCAGAATCTGCGGTCTCCTTCGTTGAGTCCAATGTCTTCGCCGGAGAGAGCTGTGGAGGAATACCCATCTGCATCTTCGGATCGAAACCCGGCCGGGTCTCCTTCAATGTCTTCACTTACTTCGTCGCCGGAGAGAGATTTGGAGAAGGAGGCAGATGCGTCTCCAAAAGTTTCGGTCTTTTCGAATCAAAGTTCTCCAATTTCTTTACCACCAAAAGCTTCAGCGTTTTCACTATCTTCAAGTTGCTCGTCTTCACCGGATAGAGTATCAAATGCTTCTGATGAAAAGGCCAAGTCTCCTTCAGATGGGTCCATGTCACCGGAGAGAAGTTTGGAGAAGAGCCCAGTTGCATCGCCAAGAACTTCAAATGCTTCTGATCGATCATTTATTCATTTGGATCCAAAGATGCAGTCTTTTTCGTCGGCTTCTTCGGTGTCTTCTTCACCGGAGAGAGAGTTGGGGAACAATTCAGATGCATCACCGAAAGTCTCCAATGTTTCTAATCGTATTGAAGAATCTTCATCTAGACTTAATGGGGCTTTGAAGATGCCTCTTTCGATACCGCCACCTCCTCCGCCTCCACTGCCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030312 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0030838 GO:0031333 GO:0031334 GO:0032271 GO:0032272 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051130 GO:0051493 GO:0051494 GO:0051495 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04320 map04320

Pfam Domains

Protein Families

FH2

Protein Analysis

249

Amino Acids

26.34

Weight (kDa)

5.81

Isoelectric Point (pI)

114.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25500
fragaria_vesca	FvH4_2g17360 FvH4_2g17360 FvH4_2g17360
malus_domestica	MD05G1152500.v1.1 MD10G1147000.v1.1
prunus_persica	Prupe.8G185400_v2.0.a1
pyrus_communis	pycom05g14690 pycom10g12670
rosa_chinensis	RchiOBHm_Chr6g0281991
rosa_laevigata	RLG00000012921
rosa_multiflora	Rmu_sc0000569.1_g000001 Rmu_sc0001255.1_g000001 Rmu_sc0011823.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186650
rosa_rugosa	Rorug06G0144700
rosa_samantha	Rh4CG162200 Rh4CG270300 Rh6AG257900 Rh6BG260900 Rh6CG259800 Rh6DG252200 Rh7AG416400
rosa_wichuraiana	Rw6G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	4 cut(s)	95, 166, 719, 731
AclWI	GGATC	3 cut(s)	243, 548, 561
AcoI	YGGCCR	1 cut(s)	246
AcuI	CTGAAG	2 cut(s)	360, 441
AcyI	GRCGYC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	5 cut(s)	261, 396, 522, 668, 700
AluBI	AGCT	2 cut(s)	206, 374
AluI	AGCT	2 cut(s)	206, 374
Alw26I	GTCTC	7 cut(s)	78, 97, 174, 258, 321, 456, 649
AlwI	GGATC	3 cut(s)	243, 548, 561
AlwNI	CAGNNNCTG	2 cut(s)	10, 163
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	2 cut(s)	246, 444
ApeKI	GCWGC	2 cut(s)	4, 154
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AspS9I	GGNCC	1 cut(s)	465
AsuC2I	CCSGG	2 cut(s)	245, 250
AsuHPI	GGTGA	5 cut(s)	112, 402, 465, 591, 627
AsuII	TTCGAA	2 cut(s)	63, 338
AvaII	GGWCC	1 cut(s)	465
BamHI	GGATCC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	500
BbsI	GAAGAC	4 cut(s)	183, 258, 399, 585
BbvI	GCAGC	2 cut(s)	16, 166
BccI	CCATC	3 cut(s)	91, 229, 455
BceAI	ACGGC	1 cut(s)	37
BcnI	CCSGG	2 cut(s)	245, 250
BcoDI	GTCTC	7 cut(s)	78, 97, 174, 258, 321, 456, 649
BfaI	CTAG	1 cut(s)	681
BisI	GCNGC	3 cut(s)	5, 95, 155
BlsI	GCNGC	3 cut(s)	6, 96, 156
Bme1390I	CCNGG	2 cut(s)	245, 250
Bme18I	GGWCC	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	2 cut(s)	466, 555
BmrFI	CCNGG	2 cut(s)	245, 250
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	7 cut(s)	236, 301, 515, 552, 619, 641, 693
BmuI	ACTGGG	1 cut(s)	494
BpiI	GAAGAC	4 cut(s)	183, 258, 399, 585
BpmI	CTGGAG	1 cut(s)	131
Bpu14I	TTCGAA	2 cut(s)	63, 338
BpuMI	CCSGG	2 cut(s)	245, 250
Bsa29I	ATCGAT	1 cut(s)	535
BsaHI	GRCGYC	1 cut(s)	50
BsaI	GGTCTC	2 cut(s)	174, 258
BsaWI	WCCGGW	4 cut(s)	121, 412, 475, 601
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse118I	RCCGGY	1 cut(s)	97
Bse1I	ACTGG	2 cut(s)	114, 500
BseAI	TCCGGA	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	114, 500
BseRI	GAGGAG	1 cut(s)	717
BseX3I	CGGCCG	1 cut(s)	246
BseXI	GCAGC	2 cut(s)	16, 166
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	248, 446
BshVI	ATCGAT	1 cut(s)	535
BsiEI	CGRYCG	1 cut(s)	249
BsiSI	CCGG	9 cut(s)	98, 122, 197, 245, 249, 284, 413, 476, 602
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	7 cut(s)	78, 97, 174, 258, 321, 456, 649
BsmBI	CGTCTC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	248, 446
Bso31I	GGTCTC	2 cut(s)	174, 258
Bsp119I	TTCGAA	2 cut(s)	63, 338
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	4 cut(s)	235, 532, 536, 553
BspACI	CCGC	4 cut(s)	95, 166, 719, 731
BspANI	GGCC	2 cut(s)	248, 446
BspCNI	CTCAG	1 cut(s)	126
BspDI	ATCGAT	1 cut(s)	535
BspEI	TCCGGA	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	466, 555
BspPI	GGATC	3 cut(s)	243, 548, 561
BspQI	GCTCTTC	1 cut(s)	488
BspT104I	TTCGAA	2 cut(s)	63, 338
BspTNI	GGTCTC	2 cut(s)	174, 258
BsrFI	RCCGGY	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	114, 500
BssAI	RCCGGY	1 cut(s)	97
BssMI	GATC	4 cut(s)	235, 532, 536, 553
BssNI	GRCGYC	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	488
BstACI	GRCGYC	1 cut(s)	50
BstAPI	GCANNNNNTGC	2 cut(s)	10, 163
BstBI	TTCGAA	2 cut(s)	63, 338
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	134
BstKTI	GATC	4 cut(s)	238, 535, 539, 556
BstMAI	GTCTC	7 cut(s)	78, 97, 174, 258, 321, 456, 649
BstMBI	GATC	4 cut(s)	235, 532, 536, 553
BstMCI	CGRYCG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 19, 34, 163, 739
BstSCI	CCNGG	2 cut(s)	243, 248
BstV1I	GCAGC	2 cut(s)	16, 166
BstV2I	GAAGAC	4 cut(s)	183, 258, 399, 585
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BstZI	CGGCCG	1 cut(s)	246
Bsu15I	ATCGAT	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	248, 446
BsuTUI	ATCGAT	1 cut(s)	535
BtgZI	GCGATG	1 cut(s)	492
BtsI	GCAGTG	1 cut(s)	737
BtsIMutI	CAGTG	2 cut(s)	131, 737
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	2 cut(s)	10, 163
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	465
ClaI	ATCGAT	1 cut(s)	535
CseI	GACGC	2 cut(s)	58, 303
CviAII	CATG	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	4 cut(s)	237, 534, 538, 555
DpnII	GATC	4 cut(s)	235, 532, 536, 553
EaeI	YGGCCR	1 cut(s)	246
EagI	CGGCCG	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
EciI	GGCGGA	1 cut(s)	720
EclXI	CGGCCG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	500
Eco31I	GGTCTC	2 cut(s)	174, 258
Eco47I	GGWCC	1 cut(s)	465
Eco52I	CGGCCG	1 cut(s)	246
Eco57I	CTGAAG	2 cut(s)	360, 441
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	500
Esp3I	CGTCTC	1 cut(s)	321
FaeI	CATG	1 cut(s)	472
FaiI	YATR	1 cut(s)	470
FatI	CATG	1 cut(s)	468
Fnu4HI	GCNGC	3 cut(s)	5, 95, 155
FriOI	GRGCYC	1 cut(s)	500
Fsp4HI	GCNGC	3 cut(s)	5, 95, 155
FspBI	CTAG	1 cut(s)	681
GluI	GCNGC	3 cut(s)	5, 95, 155
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	248, 446
HapII	CCGG	9 cut(s)	98, 122, 197, 245, 249, 284, 413, 476, 602
HgaI	GACGC	2 cut(s)	58, 303
Hin1I	GRCGYC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	5 cut(s)	125, 160, 181, 340, 671
HpaII	CCGG	9 cut(s)	98, 122, 197, 245, 249, 284, 413, 476, 602
HphI	GGTGA	5 cut(s)	112, 402, 465, 591, 627
Hpy188I	TCNGA	6 cut(s)	48, 235, 436, 460, 532, 628
Hpy188III	TCNNGA	2 cut(s)	122, 681
Hpy99I	CGWCG	3 cut(s)	94, 283, 580
HpyAV	CCTTC	6 cut(s)	24, 132, 183, 267, 295, 465
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	5 cut(s)	4, 227, 506, 565, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 19, 34, 163, 739
HpyF3I	CTNAG	1 cut(s)	134
Hsp92I	GRCGYC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	472
Kpn2I	TCCGGA	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	235, 532, 536, 553
LguI	GCTCTTC	1 cut(s)	488
Lsp1109I	GCAGC	2 cut(s)	16, 166
LweI	GCATC	7 cut(s)	236, 301, 515, 552, 619, 641, 693
MaeI	CTAG	1 cut(s)	681
MaeIII	GTNAC	1 cut(s)	471
MalI	GATC	4 cut(s)	237, 534, 538, 555
MboI	GATC	4 cut(s)	235, 532, 536, 553
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	2 cut(s)	354, 622
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	9 cut(s)	18, 48, 139, 205, 298, 717, 735, 738, 744
Mph1103I	ATGCAT	1 cut(s)	634
MroI	TCCGGA	1 cut(s)	121
MseI	TTAA	2 cut(s)	687, 748
MspI	CCGG	9 cut(s)	98, 122, 197, 245, 249, 284, 413, 476, 602
MspR9I	CCNGG	2 cut(s)	245, 250
MwoI	GCNNNNNNNGC	5 cut(s)	10, 19, 34, 163, 739
NciI	CCSGG	2 cut(s)	245, 250
NdeII	GATC	4 cut(s)	235, 532, 536, 553
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	2 cut(s)	466, 555
NmuCI	GTSAC	1 cut(s)	471
NsiI	ATGCAT	1 cut(s)	634
NspV	TTCGAA	2 cut(s)	63, 338
PciSI	GCTCTTC	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	1 cut(s)	335
PfeI	GAWTC	4 cut(s)	125, 160, 340, 671
PkrI	GCNGC	3 cut(s)	6, 96, 156
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	466, 555
PspPI	GGNCC	1 cut(s)	465
PstNI	CAGNNNCTG	2 cut(s)	10, 163
PsuI	RGATCY	1 cut(s)	553
SapI	GCTCTTC	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	687, 748
SatI	GCNGC	3 cut(s)	5, 95, 155
Sau3AI	GATC	4 cut(s)	235, 532, 536, 553
Sau96I	GGNCC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	245, 250
SduI	GDGCHC	1 cut(s)	500
SetI	ASST	4 cut(s)	143, 208, 376, 727
SfaNI	GCATC	7 cut(s)	236, 301, 515, 552, 619, 641, 693
SfuI	TTCGAA	2 cut(s)	63, 338
SgrAI	CRCCGGYG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	465
Sse9I	AATT	2 cut(s)	354, 622
SsiI	CCGC	4 cut(s)	95, 166, 719, 731
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	1 cut(s)	681
StyD4I	CCNGG	2 cut(s)	243, 248
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	6 cut(s)	63, 143, 238, 338, 535, 713
TaqII	GACCGA	1 cut(s)	319
TasI	AATT	2 cut(s)	354, 622
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	4 cut(s)	125, 160, 340, 671
Tru1I	TTAA	2 cut(s)	687, 748
Tru9I	TTAA	2 cut(s)	687, 748
TscAI	CASTG	2 cut(s)	138, 744
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	2 cut(s)	4, 154
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	3 cut(s)	453, 536, 666
TspRI	CASTG	2 cut(s)	138, 744
VpaK11BI	GGWCC	1 cut(s)	465
XbaI	TCTAGA	1 cut(s)	680
XspI	CTAG	1 cut(s)	681
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.