Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007674

Physical Location & Seq

Genomic Coordinates Reverse (-)

55922288 .. 55923043

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG416400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCAGCCTCTGCCTTCACAGCCACAGCCACAGCTAGCAGAGCCTCATTATCCGACGCCGTTTGGTTTCAAAACGGTGTCTCGTTCCCCATCTTCGTCACCGCCGGTGAGACTACTGGAGAATATTCCGGAATCCTCACCGAGAAGGTCGAGCGTTTCGCAGCAGAATCTGCGGTCTCCTTCGTTGAGTCCAATGTCTTCGCCGGAGAGAGCTGTGGAGGAATACCCATCTGCATCTTCGGATCGAAACCCGGCCGAGTCTCCTTCAATGTCTTCACTTACTTCGTCGCCGGAGAGAGATTTGGAGAAGGAGGCAGATGTGTCTCCAAAAGTTTCGGTCTTTTCGAATCAAAGTTCTCCAATTTCTTTACCACCAAAAGCTTCAGCGTTTTCACTATCTTCAAGTTGCTCGTCTTCACCGGATAGAGTATCAAATGCTTCTGATGAAAAGGCCAAGTCTCCTTCAGATGGGTCCATGTCACCGGAGAGAGGTTTGGAGAAGAGCCCAGTTGCATCGCCAAGAACTTCAAATGCTTCTGATCGATCATTTATTCATTTGGATCCAAAGATGCAGTCTTTTTCGTCGGCTTCTTCGGTGTCTTCTTCACCGGAGAAAGAGTTGGGGAACAATTCAGATGCATCACCGAAAGTCTCCAATGTGTCTAATCGTATTGAAGAATCTTCATCTAGACTTAATGGGGCTTTGAAGATGCCTCTTTCGATACCGCCACCTCCTCCGCCTCCACTGCCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0010639 GO:0016020 GO:0016043 GO:0030029 GO:0030036 GO:0030312 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0030838 GO:0031333 GO:0031334 GO:0032271 GO:0032272 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0033043 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044089 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051130 GO:0051493 GO:0051494 GO:0051495 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04320 map04320

Pfam Domains

Protein Families

FH2

Protein Analysis

251

Amino Acids

26.59

Weight (kDa)

6.19

Isoelectric Point (pI)

112.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007674)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25500
fragaria_vesca	FvH4_2g17360 FvH4_2g17360 FvH4_2g17360
malus_domestica	MD05G1152500.v1.1 MD10G1147000.v1.1
prunus_persica	Prupe.8G185400_v2.0.a1
pyrus_communis	pycom05g14690 pycom10g12670
rosa_chinensis	RchiOBHm_Chr6g0281991
rosa_laevigata	RLG00000012921
rosa_multiflora	Rmu_sc0000569.1_g000001 Rmu_sc0001255.1_g000001 Rmu_sc0011823.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186650
rosa_rugosa	Rorug06G0144700
rosa_samantha	Rh4CG162200 Rh4CG270300 Rh6AG257900 Rh6BG260900 Rh6CG259800 Rh6DG252200 Rh7AG416400
rosa_wichuraiana	Rw6G022300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	127
AciI	CCGC	4 cut(s)	101, 172, 725, 737
AclWI	GGATC	3 cut(s)	249, 554, 567
AcoI	YGGCCR	1 cut(s)	252
AcuI	CTGAAG	2 cut(s)	366, 447
AcyI	GRCGYC	1 cut(s)	56
AfiI	CCNNNNNNNGG	2 cut(s)	467, 488
AgsI	TTSAA	6 cut(s)	70, 267, 402, 528, 674, 706
AluBI	AGCT	3 cut(s)	34, 212, 380
AluI	AGCT	3 cut(s)	34, 212, 380
Alw26I	GTCTC	7 cut(s)	84, 103, 180, 264, 327, 462, 655
AlwI	GGATC	3 cut(s)	249, 554, 567
AlwNI	CAGNNNCTG	2 cut(s)	10, 169
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	2 cut(s)	252, 450
ApeKI	GCWGC	2 cut(s)	4, 160
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AspS9I	GGNCC	1 cut(s)	471
AsuC2I	CCSGG	1 cut(s)	251
AsuHPI	GGTGA	7 cut(s)	90, 118, 129, 408, 471, 597, 633
AsuII	TTCGAA	1 cut(s)	344
AsuNHI	GCTAGC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	471
BamHI	GGATCC	1 cut(s)	559
BanII	GRGCYC	1 cut(s)	506
BbsI	GAAGAC	4 cut(s)	189, 264, 405, 591
BbvI	GCAGC	2 cut(s)	16, 172
BccI	CCATC	3 cut(s)	97, 235, 461
BceAI	ACGGC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	251
BcoDI	GTCTC	7 cut(s)	84, 103, 180, 264, 327, 462, 655
BfaI	CTAG	2 cut(s)	35, 687
BisI	GCNGC	2 cut(s)	5, 161
BlsI	GCNGC	2 cut(s)	6, 162
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	471
BmiI	GGNNCC	2 cut(s)	472, 561
BmrFI	CCNGG	1 cut(s)	251
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	6 cut(s)	242, 521, 558, 625, 647, 699
BmtI	GCTAGC	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	500
BpiI	GAAGAC	4 cut(s)	189, 264, 405, 591
BpmI	CTGGAG	1 cut(s)	137
Bpu14I	TTCGAA	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	251
Bsa29I	ATCGAT	1 cut(s)	541
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	180
BsaWI	WCCGGW	4 cut(s)	127, 418, 481, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 488
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	2 cut(s)	120, 506
BseAI	TCCGGA	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	541
BseLI	CCNNNNNNNGG	2 cut(s)	467, 488
BseNI	ACTGG	2 cut(s)	120, 506
BseRI	GAGGAG	1 cut(s)	723
BseX3I	CGGCCG	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	16, 172
Bsh1285I	CGRYCG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	254, 452
BshVI	ATCGAT	1 cut(s)	541
BsiEI	CGRYCG	1 cut(s)	255
BsiSI	CCGG	8 cut(s)	104, 128, 203, 251, 290, 419, 482, 608
BslI	CCNNNNNNNGG	2 cut(s)	467, 488
BsmAI	GTCTC	7 cut(s)	84, 103, 180, 264, 327, 462, 655
BsnI	GGCC	2 cut(s)	254, 452
Bso31I	GGTCTC	1 cut(s)	180
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	506
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	241, 538, 542, 559
BspACI	CCGC	4 cut(s)	101, 172, 725, 737
BspANI	GGCC	2 cut(s)	254, 452
BspDI	ATCGAT	1 cut(s)	541
BspEI	TCCGGA	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	472, 561
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	3 cut(s)	249, 554, 567
BspQI	GCTCTTC	1 cut(s)	494
BspT104I	TTCGAA	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	180
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	120, 506
BssAI	RCCGGY	1 cut(s)	103
BssMI	GATC	4 cut(s)	241, 538, 542, 559
BssNI	GRCGYC	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	494
BstACI	GRCGYC	1 cut(s)	56
BstAPI	GCANNNNNTGC	2 cut(s)	10, 169
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	36
BstKTI	GATC	4 cut(s)	244, 541, 545, 562
BstMAI	GTCTC	7 cut(s)	84, 103, 180, 264, 327, 462, 655
BstMBI	GATC	4 cut(s)	241, 538, 542, 559
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 19, 40, 169, 745
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	16, 172
BstV2I	GAAGAC	4 cut(s)	189, 264, 405, 591
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BstZI	CGGCCG	1 cut(s)	252
Bsu15I	ATCGAT	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	254, 452
BsuTUI	ATCGAT	1 cut(s)	541
BtgZI	GCGATG	1 cut(s)	498
BtsI	GCAGTG	1 cut(s)	743
BtsIMutI	CAGTG	1 cut(s)	743
Cac8I	GCNNGC	1 cut(s)	36
CaiI	CAGNNNCTG	2 cut(s)	10, 169
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	471
ClaI	ATCGAT	1 cut(s)	541
CseI	GACGC	1 cut(s)	64
CviAII	CATG	1 cut(s)	475
DpnI	GATC	4 cut(s)	243, 540, 544, 561
DpnII	GATC	4 cut(s)	241, 538, 542, 559
EaeI	YGGCCR	1 cut(s)	252
EagI	CGGCCG	1 cut(s)	252
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
EciI	GGCGGA	1 cut(s)	726
EclXI	CGGCCG	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	506
Eco31I	GGTCTC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	471
Eco52I	CGGCCG	1 cut(s)	252
Eco57I	CTGAAG	2 cut(s)	366, 447
EcoT22I	ATGCAT	1 cut(s)	640
EcoT38I	GRGCYC	1 cut(s)	506
FaeI	CATG	1 cut(s)	478
FaiI	YATR	1 cut(s)	476
FatI	CATG	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	5, 161
FriOI	GRGCYC	1 cut(s)	506
Fsp4HI	GCNGC	2 cut(s)	5, 161
FspBI	CTAG	2 cut(s)	35, 687
GluI	GCNGC	2 cut(s)	5, 161
GsuI	CTGGAG	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	254, 452
HapII	CCGG	8 cut(s)	104, 128, 203, 251, 290, 419, 482, 608
HgaI	GACGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	6 cut(s)	131, 166, 187, 257, 346, 677
HpaII	CCGG	8 cut(s)	104, 128, 203, 251, 290, 419, 482, 608
HphI	GGTGA	7 cut(s)	90, 118, 129, 408, 471, 597, 633
Hpy188I	TCNGA	6 cut(s)	54, 241, 442, 466, 538, 634
Hpy188III	TCNNGA	2 cut(s)	128, 687
Hpy99I	CGWCG	3 cut(s)	58, 289, 586
HpyAV	CCTTC	6 cut(s)	24, 138, 189, 273, 301, 471
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4V	TGCA	5 cut(s)	4, 233, 512, 571, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 19, 40, 169, 745
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	478
Kpn2I	TCCGGA	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	241, 538, 542, 559
LguI	GCTCTTC	1 cut(s)	494
Lsp1109I	GCAGC	2 cut(s)	16, 172
LweI	GCATC	6 cut(s)	242, 521, 558, 625, 647, 699
MaeI	CTAG	2 cut(s)	35, 687
MaeIII	GTNAC	2 cut(s)	96, 477
MalI	GATC	4 cut(s)	243, 540, 544, 561
MboI	GATC	4 cut(s)	241, 538, 542, 559
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	506
MluCI	AATT	2 cut(s)	360, 628
MlyI	GAGTC	2 cut(s)	196, 266
MmeI	TCCRAC	1 cut(s)	77
Mph1103I	ATGCAT	1 cut(s)	640
MroI	TCCGGA	1 cut(s)	127
MseI	TTAA	2 cut(s)	693, 754
MspI	CCGG	8 cut(s)	104, 128, 203, 251, 290, 419, 482, 608
MspR9I	CCNGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	5 cut(s)	10, 19, 40, 169, 745
NciI	CCSGG	1 cut(s)	251
NdeII	GATC	4 cut(s)	241, 538, 542, 559
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	478
NlaIV	GGNNCC	2 cut(s)	472, 561
NmeAIII	GCCGAG	1 cut(s)	280
NmuCI	GTSAC	2 cut(s)	96, 477
NsiI	ATGCAT	1 cut(s)	640
NspV	TTCGAA	1 cut(s)	344
PciSI	GCTCTTC	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PfeI	GAWTC	4 cut(s)	131, 166, 346, 677
PkrI	GCNGC	2 cut(s)	6, 162
PleI	GAGTC	2 cut(s)	195, 265
PpsI	GAGTC	2 cut(s)	195, 265
PspN4I	GGNNCC	2 cut(s)	472, 561
PspPI	GGNCC	1 cut(s)	471
PstNI	CAGNNNCTG	2 cut(s)	10, 169
PsuI	RGATCY	1 cut(s)	559
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	693, 754
SatI	GCNGC	2 cut(s)	5, 161
Sau3AI	GATC	4 cut(s)	241, 538, 542, 559
Sau96I	GGNCC	1 cut(s)	471
SchI	GAGTC	2 cut(s)	196, 266
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	506
SetI	ASST	6 cut(s)	36, 149, 214, 382, 493, 733
SfaNI	GCATC	6 cut(s)	242, 521, 558, 625, 647, 699
SfuI	TTCGAA	1 cut(s)	344
SgrAI	CRCCGGYG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	471
Sse9I	AATT	2 cut(s)	360, 628
SsiI	CCGC	4 cut(s)	101, 172, 725, 737
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	2 cut(s)	35, 687
StyD4I	CCNGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	76
TaqI	TCGA	5 cut(s)	149, 244, 344, 541, 719
TaqII	GACCGA	1 cut(s)	325
TasI	AATT	2 cut(s)	360, 628
TfiI	GAWTC	4 cut(s)	131, 166, 346, 677
Tru1I	TTAA	2 cut(s)	693, 754
Tru9I	TTAA	2 cut(s)	693, 754
TscAI	CASTG	1 cut(s)	750
TseFI	GTSAC	2 cut(s)	96, 477
TseI	GCWGC	2 cut(s)	4, 160
Tsp45I	GTSAC	2 cut(s)	96, 477
TspDTI	ATGAA	3 cut(s)	459, 542, 672
TspRI	CASTG	1 cut(s)	750
VpaK11BI	GGWCC	1 cut(s)	471
XbaI	TCTAGA	1 cut(s)	686
XspI	CTAG	2 cut(s)	35, 687
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.