Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008133

Physical Location & Seq

Genomic Coordinates Forward (+)

2027675 .. 2029579

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0029100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGGTAGGGGAAGCTAGATCTGTATATATACTAGTGAGTTATACTGCTGTAAAGTATACAAGTGGGTTATATGAAGTTAAAGTTGAAGAAGAATCAGGAAAAGTTACGGGAGAAAAGCATGAATTACTTAACCCTGTAGCAAACTTGTTCGATAAAACCAAGTTTGAGGTCCCGGACTATTTTGTTTTGGAGAGCGCGAGGTTCTGCAGCTCCTCCAAGCTGCACCTTTTGATTAATGAAGGACCACCATCTGCACTAGGCTGGACTAAGCGGAGCACCATCACCGCTGCCTCCATGGCCAAGGCCGGCTCATTGAGGGGATATATTTTTGACACAAAATCAAGATCCTTGGAGGCTTTCAAGCCGCCTCAATCATTGAAGCGAGTTGCTGTTGTTATATCTGCCTATGATAAGCTTTATCACCTTGCCGATCCAATTCTAGAGAAACCATCGTTGTTGCGAGGCCTGAAGAGTGGGGTTAAGGGGTACAGTACTGTCTTTCAGCAAACGGAGTATTTGGTTCATTTGGGGAACTTGAAATTTTGTCTTGCCCAAACTATCATGGATGACTTGACCACAGGGCGTCAACCTCTATGGATCACCACATTCCACGTTATCAATGAAGGAGGAGGAAGGTATATCAAGACATTACATTCAACCGTTCGTGATGTGAACATAAAGTGTTTTGGTAGATTCACGGTTGATTTTAGCTTCACAGTTGGGGAGGATTTTGAACCAAAAGAAAGAGGGAGTGTTGATATGATGGAGGAGCAGCCGAAAGAAGAAACTGCGCTGATTTCTGATGGAATCATGGAGGACAGAGGTGTTTCAGTAAATGAAGAAGAAACAAATTCCCAATGTGATTCAGAAAATGAAGAAGAAACAAAATGTGAAGGTGAGTCAGAAAATGAAGAAACAAAATGCGAAGGTGATTCAGAAAATGAAGAAAGAGAAGACAAGGAGAAGTCTGTTAATGGCGTTAATGCTTGTCCATTGGCTAAGGAAAAGGGGACAGCCAAAAAGAGAGACAAAAGATTGAGTATTTTTCACAGGAGCCTTAAAGCCAAGTCTGGTCACAAGAAGCGTAAATGGAAGAATGTTTCATCAAGGTCCGTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

374

Amino Acids

41.96

Weight (kDa)

6.16

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008133)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03690 FvH4_5g03700 FvH4_5g21200
malus_domestica	MD14G1116600.v1.1
prunus_persica	Prupe.5G111000_v2.0.a1 Prupe.5G111100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0196031 RchiOBHm_Chr7g0196041
rosa_laevigata	RLG00000004071 RLG00000004072
rosa_multiflora	Rmu_sc0001640.1_g000010 Rmu_sc0001640.1_g000011
rosa_roxburghii	Rroxscaffold_3G00259910 Rroxscaffold_3G00259920
rosa_rugosa	Rorug07G0029100 Rorug07G0029200
rosa_samantha	Rh7AG155800 Rh7AG155900 Rh7BG157600 Rh7CG161200 Rh7CG161300 Rh7DG156700 Rh7DG156800
rosa_wichuraiana	Rw7G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	59
AccII	CGCG	1 cut(s)	200
AciI	CCGC	3 cut(s)	274, 288, 368
AclWI	GGATC	3 cut(s)	342, 428, 608
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	542, 853
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	1 cut(s)	586
AfaI	GTAC	2 cut(s)	491, 496
AgsI	TTSAA	6 cut(s)	89, 364, 382, 541, 660, 737
AhlI	ACTAGT	1 cut(s)	34
AluBI	AGCT	5 cut(s)	17, 213, 223, 418, 714
AluI	AGCT	5 cut(s)	17, 213, 223, 418, 714
Alw21I	GWGCWC	1 cut(s)	281
Alw26I	GTCTC	1 cut(s)	1023
AlwI	GGATC	3 cut(s)	342, 428, 608
AoxI	GGCC	3 cut(s)	300, 306, 466
ApeKI	GCWGC	4 cut(s)	210, 223, 290, 775
ApoI	RAATTY	2 cut(s)	542, 853
AseI	ATTAAT	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	200, 796
AspS9I	GGNCC	3 cut(s)	172, 245, 1113
AsuC2I	CCSGG	1 cut(s)	176
AsuHPI	GGTGA	5 cut(s)	277, 416, 595, 911, 944
AvaII	GGWCC	3 cut(s)	172, 245, 1113
BalI	TGGCCA	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	963
Bbv12I	GWGCWC	1 cut(s)	281
BbvI	GCAGC	4 cut(s)	210, 222, 277, 787
BccI	CCATC	5 cut(s)	259, 290, 460, 760, 800
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	1023
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	4 cut(s)	18, 35, 260, 443
BfmI	CTRYAG	2 cut(s)	138, 208
BglI	GCCNNNNNGGC	1 cut(s)	299
BglII	AGATCT	1 cut(s)	20
BisI	GCNGC	5 cut(s)	211, 224, 291, 368, 776
BlsI	GCNGC	5 cut(s)	212, 225, 292, 369, 777
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	3 cut(s)	172, 245, 1113
BmgT120I	GGNCC	3 cut(s)	172, 245, 1113
BmiI	GGNNCC	2 cut(s)	174, 1058
BmrFI	CCNGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	963
Bpu10I	CCTNAGC	1 cut(s)	1002
BpuMI	CCSGG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	586
BsaJI	CCNNGG	3 cut(s)	297, 303, 351
Bse118I	RCCGGY	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	297, 303, 351
BseGI	GGATG	1 cut(s)	574
BseRI	GAGGAG	3 cut(s)	205, 645, 785
BseXI	GCAGC	4 cut(s)	210, 222, 277, 787
BsgI	GTGCAG	2 cut(s)	209, 240
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	3 cut(s)	302, 308, 468
BsiHKAI	GWGCWC	1 cut(s)	281
BsiSI	CCGG	2 cut(s)	176, 309
BslFI	GGGAC	2 cut(s)	158, 1027
BsmAI	GTCTC	1 cut(s)	1023
BsmFI	GGGAC	2 cut(s)	158, 1027
BsnI	GGCC	3 cut(s)	302, 308, 468
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	4 cut(s)	20, 347, 433, 600
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	3 cut(s)	274, 288, 368
BspANI	GGCC	3 cut(s)	302, 308, 468
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	174, 1058
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	3 cut(s)	342, 428, 608
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	297, 303, 351
BssMI	GATC	4 cut(s)	20, 347, 433, 600
BssNAI	GTATAC	1 cut(s)	60
BssNI	GRCGYC	1 cut(s)	586
BssT1I	CCWWGG	3 cut(s)	297, 303, 351
Bst1107I	GTATAC	1 cut(s)	60
Bst4CI	ACNGT	5 cut(s)	494, 499, 664, 703, 721
Bst6I	CTCTTC	1 cut(s)	467
BstACI	GRCGYC	1 cut(s)	586
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	270, 1002
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	574
BstFNI	CGCG	1 cut(s)	200
BstHHI	GCGC	2 cut(s)	200, 796
BstKTI	GATC	4 cut(s)	23, 350, 436, 603
BstMAI	GTCTC	1 cut(s)	1023
BstMBI	GATC	4 cut(s)	20, 347, 433, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	2 cut(s)	138, 208
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	4 cut(s)	210, 222, 277, 787
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	2 cut(s)	20, 347
BstYI	RGATCY	2 cut(s)	20, 347
BstZ17I	GTATAC	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	302, 308, 468
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	574
Cac8I	GCNNGC	1 cut(s)	310
CfoI	GCGC	2 cut(s)	200, 796
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	172, 245, 1113
CseI	GACGC	1 cut(s)	575
Csp6I	GTAC	2 cut(s)	490, 495
CviAII	CATG	4 cut(s)	122, 298, 565, 814
CviQI	GTAC	2 cut(s)	490, 495
DdeI	CTNAG	2 cut(s)	270, 1002
DpnI	GATC	4 cut(s)	22, 349, 435, 602
DpnII	GATC	4 cut(s)	20, 347, 433, 600
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco130I	CCWWGG	3 cut(s)	297, 303, 351
Eco147I	AGGCCT	1 cut(s)	468
Eco47I	GGWCC	3 cut(s)	172, 245, 1113
Eco57I	CTGAAG	1 cut(s)	491
EcoO109I	RGGNCCY	1 cut(s)	172
EcoT14I	CCWWGG	3 cut(s)	297, 303, 351
ErhI	CCWWGG	3 cut(s)	297, 303, 351
FaeI	CATG	4 cut(s)	125, 301, 568, 817
FaqI	GGGAC	2 cut(s)	158, 1027
FatI	CATG	4 cut(s)	121, 297, 564, 813
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	5 cut(s)	211, 224, 291, 368, 776
FokI	GGATG	1 cut(s)	581
Fsp4HI	GCNGC	5 cut(s)	211, 224, 291, 368, 776
FspBI	CTAG	4 cut(s)	18, 35, 260, 443
GlaI	GCGC	2 cut(s)	199, 795
GluI	GCNGC	5 cut(s)	211, 224, 291, 368, 776
HaeIII	GGCC	3 cut(s)	302, 308, 468
HapII	CCGG	2 cut(s)	176, 309
HgaI	GACGC	1 cut(s)	575
HhaI	GCGC	2 cut(s)	200, 796
Hin1I	GRCGYC	1 cut(s)	586
Hin1II	CATG	4 cut(s)	125, 301, 568, 817
Hin6I	GCGC	2 cut(s)	198, 794
HinP1I	GCGC	2 cut(s)	198, 794
HincII	GTYRAC	1 cut(s)	590
HindII	GTYRAC	1 cut(s)	590
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	6 cut(s)	95, 696, 810, 866, 902, 935
HpaII	CCGG	2 cut(s)	176, 309
HphI	GGTGA	5 cut(s)	277, 416, 595, 911, 944
Hpy166II	GTNNAC	3 cut(s)	60, 590, 676
Hpy188I	TCNGA	4 cut(s)	805, 871, 907, 940
Hpy188III	TCNNGA	5 cut(s)	99, 345, 443, 646, 668
Hpy8I	GTNNAC	3 cut(s)	60, 590, 676
HpyAV	CCTTC	5 cut(s)	236, 620, 630, 890, 923
HpyCH4III	ACNGT	5 cut(s)	494, 499, 664, 703, 721
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	3 cut(s)	210, 226, 257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	2 cut(s)	270, 1002
HpySE526I	ACGT	1 cut(s)	615
Hsp92I	GRCGYC	1 cut(s)	586
Hsp92II	CATG	4 cut(s)	125, 301, 568, 817
HspAI	GCGC	2 cut(s)	198, 794
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	20, 347, 433, 600
LmnI	GCTCC	4 cut(s)	218, 276, 772, 1056
LpnPI	CCDG	9 cut(s)	84, 150, 189, 250, 322, 482, 567, 1039, 1059
Lsp1109I	GCAGC	4 cut(s)	210, 222, 277, 787
MaeI	CTAG	4 cut(s)	18, 35, 260, 443
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	2 cut(s)	106, 1076
MalI	GATC	4 cut(s)	22, 349, 435, 602
MboI	GATC	4 cut(s)	20, 347, 433, 600
MflI	RGATCY	2 cut(s)	20, 347
MhlI	GDGCHC	1 cut(s)	281
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	4 cut(s)	125, 438, 542, 853
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	911
Mox20I	TGGCCA	1 cut(s)	302
MroNI	GCCGGC	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	7 cut(s)	81, 132, 237, 483, 975, 984, 1062
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	2 cut(s)	176, 309
MspR9I	CCNGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	299
NaeI	GCCGGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	20, 347, 433, 600
NgoMIV	GCCGGC	1 cut(s)	308
NlaIII	CATG	4 cut(s)	125, 301, 568, 817
NlaIV	GGNNCC	2 cut(s)	174, 1058
NmuCI	GTSAC	1 cut(s)	1076
PceI	AGGCCT	1 cut(s)	468
PdiI	GCCGGC	1 cut(s)	310
PfeI	GAWTC	5 cut(s)	95, 696, 810, 866, 935
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	5 cut(s)	212, 225, 292, 369, 777
PleI	GAGTC	1 cut(s)	910
PpsI	GAGTC	1 cut(s)	910
PpuMI	RGGWCCY	1 cut(s)	172
PshBI	ATTAAT	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	174, 1058
PspPI	GGNCC	3 cut(s)	172, 245, 1113
PspPPI	RGGWCCY	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	212
PsuI	RGATCY	2 cut(s)	20, 347
RsaI	GTAC	2 cut(s)	491, 496
RsaNI	GTAC	2 cut(s)	490, 495
SaqAI	TTAA	7 cut(s)	81, 132, 237, 483, 975, 984, 1062
SatI	GCNGC	5 cut(s)	211, 224, 291, 368, 776
Sau3AI	GATC	4 cut(s)	20, 347, 433, 600
Sau96I	GGNCC	3 cut(s)	172, 245, 1113
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	1 cut(s)	911
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	281
SfcI	CTRYAG	2 cut(s)	138, 208
SinI	GGWCC	3 cut(s)	172, 245, 1113
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	4 cut(s)	125, 438, 542, 853
SseBI	AGGCCT	1 cut(s)	468
SsiI	CCGC	3 cut(s)	274, 288, 368
SspMI	CTAG	4 cut(s)	18, 35, 260, 443
StuI	AGGCCT	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	3 cut(s)	297, 303, 351
TaaI	ACNGT	5 cut(s)	494, 499, 664, 703, 721
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	1 cut(s)	153
TasI	AATT	4 cut(s)	125, 438, 542, 853
TatI	WGTACW	1 cut(s)	494
TauI	GCSGC	1 cut(s)	370
TfiI	GAWTC	5 cut(s)	95, 696, 810, 866, 935
Tru1I	TTAA	7 cut(s)	81, 132, 237, 483, 975, 984, 1062
Tru9I	TTAA	7 cut(s)	81, 132, 237, 483, 975, 984, 1062
TseFI	GTSAC	1 cut(s)	1076
TseI	GCWGC	4 cut(s)	210, 223, 290, 775
Tsp45I	GTSAC	1 cut(s)	1076
TspGWI	ACGGA	2 cut(s)	527, 1105
VpaK11BI	GGWCC	3 cut(s)	172, 245, 1113
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	2 cut(s)	542, 853
XbaI	TCTAGA	1 cut(s)	442
XmiI	GTMKAC	1 cut(s)	59
XspI	CTAG	4 cut(s)	18, 35, 260, 443
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.