Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006163

Physical Location & Seq

Genomic Coordinates Reverse (-)

12944159 .. 12948167

Gene Structure 4009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0161600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGTGGATGTTTGGGAGGAAAGGGCCTTCTGGGTATTCAGCCCGCTCTACAGCTGAGGATGTTACTCAAGGGATTGGCGGAACTGGCCTCACTGCACTTGTTACAGGAGCTTCAAGTGGTCTTGGTTTGGAAACAACACGTGTTTTAGCATTGCGTGGTGTTCATGTTGTCATGGCAGTAAGGAATACAGATGCGGGTAGGGATGTCAAAGAATCAATACTTAAGGAAGTCCCCACTGCCAATATTGATGTCATGGAACTAGATCTCAGCTCATTGGCATCAGTAAGAAAATTTGCATCGGAATATAAATCATCTGGTCTTCCATTGAATATCCTGATTAATAATGCAGGTGTTATGGCAACTCCATTCATGCTTTCGCATGACAACATTGAACTGCAGTTTGCAACCAACCATTTAGGTCATTTTCTTTTGACAAACCTTCTATTGGATACCATGAAAAAGACAACAAGTGAAAGCAAAAAAGAGGGAAGGATCGTGATTGTATCATCAGAGGCTCATCGGTATGCATATAGTGAGGGGATTCGCTTTGATTTGATCAATGATGAATCAGGGTACAACAGTATGTATGCTTATGGACAATCAAAGCTAGCCAACATATTGCATGCTAGTGAGCTTGCAAAGCGCTTGAAGGCAGAAGGGGTTGATATAACTGCTAATTCCCTTCATCCTGGATCAATTGTTACCAATCTTCTACGGTACCACAGTTACATTAATGCTGTTGCTAATATGGTCGGCAAATATGTGCTTAAAAATGTTCACCAGGGAGCTGCGACTGAATGCTATTTGGCATTGCATCCGCAAGCTAAGGGTGTAAGTGGTGAGTATTTTATGGACAGCAACATTGCCAATCCAACGGCTCTGGCTAAAGATGCAGAATTGGCAAAGAAGCTATGGGACTTCAGTTTGAGCCTGACAGAACCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

315

Amino Acids

34.13

Weight (kDa)

7.17

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	31 - 178	1.2e-24	short chain dehydrogenase
KR	PF08659	31 - 131	3.6e-08	KR domain
adh_short_C2	PF13561	36 - 282	7.1e-14	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33620 AT2G33620 AT2G33620 AT2G33620
fragaria_vesca	FvH4_5g26120 FvH4_5g26120 FvH4_5g26120 FvH4_5g26120 FvH4_5g26120
malus_domestica	MD06G1004200.v1.1 MD16G1283200.v1.1
prunus_persica	Prupe.5G005600_v2.0.a1 Prupe.5G005600_v2.0.a1
pyrus_communis	pycom06g00400 pycom16g26190
rosa_chinensis	RchiOBHm_Chr7g0216681
rosa_laevigata	RLG00000002551
rosa_multiflora	Rmu_ssc0000117.1_g000011
rosa_roxburghii	Rroxscaffold_3G00243020
rosa_rugosa	Rorug07G0161600 Rorug07G0161700
rosa_samantha	Rh7AG301500 Rh7AG480200 Rh7BG293000 Rh7CG320100 Rh7DG302100
rosa_wichuraiana	Rw7G025580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	338
Acc65I	GGTACC	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	717
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	4 cut(s)	43, 78, 194, 818
AclWI	GGATC	2 cut(s)	500, 700
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	904
AcvI	CACGTG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	575, 719
AfeI	AGCGCT	1 cut(s)	644
AfiI	CCNNNNNNNGG	1 cut(s)	445
AflII	CTTAAG	1 cut(s)	221
AflIII	ACRYGT	2 cut(s)	137, 139
AgsI	TTSAA	4 cut(s)	114, 328, 392, 649
AjnI	CCWGG	2 cut(s)	688, 780
AluBI	AGCT	8 cut(s)	53, 110, 270, 607, 634, 788, 824, 910
AluI	AGCT	8 cut(s)	53, 110, 270, 607, 634, 788, 824, 910
AlwI	GGATC	2 cut(s)	500, 700
Aor51HI	AGCGCT	1 cut(s)	644
AoxI	GGCC	2 cut(s)	23, 85
ApeKI	GCWGC	1 cut(s)	788
ApoI	RAATTY	1 cut(s)	290
AseI	ATTAAT	2 cut(s)	339, 732
Asp718I	GGTACC	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	2 cut(s)	770, 851
AsuNHI	GCTAGC	1 cut(s)	607
BaeI	ACNNNNGTAYC	4 cut(s)	565, 598, 709, 742
BanI	GGYRCC	1 cut(s)	717
BbrPI	CACGTG	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	311
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	775
BceAI	ACGGC	1 cut(s)	891
BciT130I	CCWGG	2 cut(s)	690, 782
BciVI	GTATCC	1 cut(s)	442
BclI	TGATCA	1 cut(s)	555
BfaI	CTAG	3 cut(s)	260, 608, 627
BfmI	CTRYAG	2 cut(s)	48, 395
BfoI	RGCGCY	1 cut(s)	646
BfrI	CTTAAG	1 cut(s)	221
BfuAI	ACCTGC	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	262
BisI	GCNGC	1 cut(s)	789
BlsI	GCNGC	1 cut(s)	790
Bme1390I	CCNGG	2 cut(s)	690, 782
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	719
BmrFI	CCNGG	2 cut(s)	690, 782
BmsI	GCATC	5 cut(s)	181, 287, 305, 823, 880
BmtI	GCTAGC	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	311
Bpu10I	CCTNAGC	2 cut(s)	54, 825
BpuEI	CTTGAG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	781
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	3 cut(s)	149, 809, 861
BseBI	CCWGG	2 cut(s)	690, 782
BseDI	CCNNGG	1 cut(s)	781
BseGI	GGATG	5 cut(s)	12, 64, 208, 685, 814
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMI	GCAATG	3 cut(s)	149, 809, 861
BseMII	CTCAG	2 cut(s)	45, 280
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	775
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	25, 87
BshNI	GGYRCC	1 cut(s)	717
BslFI	GGGAC	2 cut(s)	215, 929
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmFI	GGGAC	2 cut(s)	215, 929
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	2 cut(s)	25, 87
Bsp143I	GATC	4 cut(s)	262, 492, 555, 692
BspACI	CCGC	4 cut(s)	43, 78, 194, 818
BspANI	GGCC	2 cut(s)	25, 87
BspCNI	CTCAG	2 cut(s)	46, 279
BspLI	GGNNCC	1 cut(s)	719
BspMAI	CTGCAG	1 cut(s)	399
BspMI	ACCTGC	1 cut(s)	338
BspOI	GCTAGC	1 cut(s)	611
BspPI	GGATC	2 cut(s)	500, 700
BspT107I	GGYRCC	1 cut(s)	717
BspTI	CTTAAG	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	3 cut(s)	149, 809, 861
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	781
BssMI	GATC	4 cut(s)	262, 492, 555, 692
Bst2UI	CCWGG	2 cut(s)	690, 782
Bst4CI	ACNGT	3 cut(s)	581, 717, 725
BstAFI	CTTAAG	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	140
BstC8I	GCNNGC	5 cut(s)	43, 609, 624, 636, 822
BstDEI	CTNAG	3 cut(s)	54, 266, 825
BstF5I	GGATG	5 cut(s)	12, 64, 208, 685, 814
BstH2I	RGCGCY	1 cut(s)	646
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	4 cut(s)	265, 495, 558, 695
BstMBI	GATC	4 cut(s)	262, 492, 555, 692
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 640, 890, 899
BstNI	CCWGG	2 cut(s)	690, 782
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	2 cut(s)	688, 780
BstSFI	CTRYAG	2 cut(s)	48, 395
BstV1I	GCAGC	1 cut(s)	775
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	25, 87
BtsCI	GGATG	5 cut(s)	12, 64, 208, 685, 814
BtsI	GCAGTG	2 cut(s)	90, 234
BtsIMutI	CAGTG	2 cut(s)	90, 234
BveI	ACCTGC	1 cut(s)	338
Cac8I	GCNNGC	5 cut(s)	43, 609, 624, 636, 822
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	574, 718
CviAII	CATG	7 cut(s)	164, 172, 253, 370, 380, 454, 623
CviQI	GTAC	2 cut(s)	574, 718
DdeI	CTNAG	3 cut(s)	54, 266, 825
DpnI	GATC	4 cut(s)	264, 494, 557, 694
DpnII	GATC	4 cut(s)	262, 492, 555, 692
EciI	GGCGGA	1 cut(s)	93
Eco47III	AGCGCT	1 cut(s)	644
Eco57I	CTGAAG	1 cut(s)	904
Eco72I	CACGTG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	688, 780
EcoT22I	ATGCAT	1 cut(s)	529
FaeI	CATG	7 cut(s)	167, 175, 256, 373, 383, 457, 626
FaqI	GGGAC	2 cut(s)	215, 929
FatI	CATG	7 cut(s)	163, 171, 252, 369, 379, 453, 622
FauI	CCCGC	2 cut(s)	50, 187
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	1 cut(s)	789
FokI	GGATG	5 cut(s)	19, 71, 215, 672, 801
Fsp4HI	GCNGC	1 cut(s)	789
FspBI	CTAG	3 cut(s)	260, 608, 627
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	1 cut(s)	789
HaeII	RGCGCY	1 cut(s)	646
HaeIII	GGCC	2 cut(s)	25, 87
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	7 cut(s)	167, 175, 256, 373, 383, 457, 626
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	212, 541, 566
HphI	GGTGA	2 cut(s)	770, 851
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	2 cut(s)	301, 511
Hpy188III	TCNNGA	2 cut(s)	334, 496
Hpy8I	GTNNAC	1 cut(s)	778
HpyAV	CCTTC	6 cut(s)	36, 449, 483, 643, 650, 692
HpyCH4III	ACNGT	3 cut(s)	581, 717, 725
HpyCH4IV	ACGT	1 cut(s)	139
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 640, 890, 899
HpyF3I	CTNAG	3 cut(s)	54, 266, 825
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	7 cut(s)	167, 175, 256, 373, 383, 457, 626
HspAI	GCGC	1 cut(s)	643
KpnI	GGTACC	1 cut(s)	721
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	4 cut(s)	262, 492, 555, 692
LmnI	GCTCC	2 cut(s)	107, 785
Lsp1109I	GCAGC	1 cut(s)	775
LweI	GCATC	5 cut(s)	181, 287, 305, 823, 880
MaeI	CTAG	3 cut(s)	260, 608, 627
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	4 cut(s)	61, 100, 700, 725
MalI	GATC	4 cut(s)	264, 494, 557, 694
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	4 cut(s)	262, 492, 555, 692
MboII	GAAGA	2 cut(s)	311, 701
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	262
MluCI	AATT	4 cut(s)	290, 676, 696, 896
MmeI	TCCRAC	1 cut(s)	896
MnlI	CCTC	6 cut(s)	9, 49, 98, 478, 505, 529
Mph1103I	ATGCAT	1 cut(s)	529
MseI	TTAA	4 cut(s)	222, 339, 732, 768
MslI	CAYNNNNRTG	2 cut(s)	522, 627
MspA1I	CMGCKG	1 cut(s)	53
MspCI	CTTAAG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	690, 782
MunI	CAATTG	1 cut(s)	696
Mva1269I	GAATGC	1 cut(s)	803
MvaI	CCWGG	2 cut(s)	690, 782
MwoI	GCNNNNNNNGC	4 cut(s)	84, 640, 890, 899
NdeII	GATC	4 cut(s)	262, 492, 555, 692
NheI	GCTAGC	1 cut(s)	607
NlaIII	CATG	7 cut(s)	167, 175, 256, 373, 383, 457, 626
NlaIV	GGNNCC	1 cut(s)	719
NsiI	ATGCAT	1 cut(s)	529
NspI	RCATGY	1 cut(s)	626
PaeI	GCATGC	1 cut(s)	626
PaqCI	CACCTGC	1 cut(s)	338
PctI	GAATGC	1 cut(s)	803
PfeI	GAWTC	3 cut(s)	212, 541, 566
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	1 cut(s)	790
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	140
PshBI	ATTAAT	2 cut(s)	339, 732
Psp6I	CCWGG	2 cut(s)	688, 780
PspCI	CACGTG	1 cut(s)	140
PspGI	CCWGG	2 cut(s)	688, 780
PspN4I	GGNNCC	1 cut(s)	719
PspPI	GGNCC	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	2 cut(s)	575, 719
RsaNI	GTAC	2 cut(s)	574, 718
RseI	CAYNNNNRTG	2 cut(s)	522, 627
SaqAI	TTAA	4 cut(s)	222, 339, 732, 768
SatI	GCNGC	1 cut(s)	789
Sau3AI	GATC	4 cut(s)	262, 492, 555, 692
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	690, 782
SfaNI	GCATC	5 cut(s)	181, 287, 305, 823, 880
SfcI	CTRYAG	2 cut(s)	48, 395
SmiMI	CAYNNNNRTG	2 cut(s)	522, 627
SmlI	CTYRAG	2 cut(s)	66, 221
SmoI	CTYRAG	2 cut(s)	66, 221
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	4 cut(s)	290, 676, 696, 896
SsiI	CCGC	4 cut(s)	43, 78, 194, 818
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	3 cut(s)	260, 608, 627
StyD4I	CCNGG	2 cut(s)	688, 780
TaaI	ACNGT	3 cut(s)	581, 717, 725
TaiI	ACGT	1 cut(s)	142
TasI	AATT	4 cut(s)	290, 676, 696, 896
TfiI	GAWTC	3 cut(s)	212, 541, 566
Tru1I	TTAA	4 cut(s)	222, 339, 732, 768
Tru9I	TTAA	4 cut(s)	222, 339, 732, 768
TscAI	CASTG	2 cut(s)	97, 241
TseI	GCWGC	1 cut(s)	788
TspDTI	ATGAA	5 cut(s)	152, 358, 470, 579, 674
TspRI	CASTG	2 cut(s)	97, 241
Vha464I	CTTAAG	1 cut(s)	221
VspI	ATTAAT	2 cut(s)	339, 732
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	626
XspI	CTAG	3 cut(s)	260, 608, 627
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.