Rh7CG320100

DNA-binding protein ESCAROLA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006163
Physical Location & Seq
Reverse (-)
34441585 .. 34445506
3922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG320100.1

Sequence Viewer

Length: 816 bp
ATGTCAGGATCTGAGACGGGAGTGATGACCAGTAGAGAGCCGTTTCTGCAGGCTAGTCCTCTACAGTCACTGACTCAGTCACAGTCACAGAGCATGCGCTTGGACTACACTTCTGGCACTAATGCTATCTATAAGCCCGTCACTGCCGCCACCTCACCGCCGCCTTACCAGTCCACTGCTGGAGCTGCTGCTGCTCCGGGGGACAGTTCAACTGGTGCTGGTGCTGTTATGTCATCTGGGCAGCTTAACATGAACATGGGTGGTGAGCCAATGAAGAGGAAGAGAGGGAGGCCGAGGAAGTATGGGCCAGATGGGACAATGTCATTGGCTCTGTCACCTTCAGCACAGTCTGCTGCTGTCCCTGTTAACCAGTCCAGTGGAGGCTTTTCTCCTCCTCCTCCGCCACCGCCTCCTGCTGCTGCTGCTTCTGGAGGCGCTGCCTCGCCCACTACTTCCACCAAGAAAGCCAGAGGCAGGCCACCTGGTTCTACAAATACAAAGAAGCAGCAATTGGAAGCTTTGGGATCTGCAGGCATGGGATTTACACCACATGTCATCACTGTTAAAGCTGGAGAGGTAGTTGTTGGGAGCTTTGCTGCAGATGGTCGAAAAGAACCAAAGACGGAAATGAAAAAAGATCCTTCATCTGCAGGACCACGGCTTGCAGCAGCTAGCGGGCCAAACGGGGTCAGTAGTCCACCGTCACATGGAACTCTCAGTGAATCCTCAGGTGGGCAGGGAAGTCCACTTAACCAGAGTACAGGAGCCGGCAATAACAATAACCCACAAGGCATGTCAAGCATGTCCTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

271

Amino Acids

27.04

Weight (kDa)

10.09

Isoelectric Point (pI)

68.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 147, 158, 161, 401, 407, 675
AclWI GGATC 3 cut(s) 16, 532, 632
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 760
AfiI CCNNNNNNNGG 3 cut(s) 474, 707, 732
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 1 cut(s) 210
AjnI CCWGG 2 cut(s) 481, 806
AjuI GAANNNNNNNTTGG 2 cut(s) 494, 526
AluBI AGCT 6 cut(s) 185, 244, 518, 569, 591, 671
AluI AGCT 6 cut(s) 185, 244, 518, 569, 591, 671
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 3 cut(s) 16, 532, 632
AlwNI CAGNNNCTG 2 cut(s) 11, 70
AoxI GGCC 4 cut(s) 290, 305, 476, 677
AspLEI GCGC 2 cut(s) 99, 437
AspS9I GGNCC 3 cut(s) 305, 653, 677
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 3 cut(s) 147, 275, 327
AsuNHI GCTAGC 1 cut(s) 671
AvaII GGWCC 1 cut(s) 653
AxyI CCTNAGG 1 cut(s) 727
BccI CCATC 2 cut(s) 305, 596
BceAI ACGGC 2 cut(s) 25, 674
BciT130I CCWGG 2 cut(s) 483, 808
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 2 cut(s) 54, 672
BfmI CTRYAG 5 cut(s) 47, 62, 528, 597, 648
BfoI RGCGCY 1 cut(s) 438
Bme1390I CCNGG 3 cut(s) 198, 483, 808
Bme18I GGWCC 1 cut(s) 653
BmgT120I GGNCC 3 cut(s) 305, 653, 677
BmiI GGNNCC 1 cut(s) 766
BmrFI CCNGG 3 cut(s) 198, 483, 808
BmtI GCTAGC 1 cut(s) 675
BpmI CTGGAG 3 cut(s) 201, 450, 591
BpuMI CCSGG 1 cut(s) 198
BsaJI CCNNGG 3 cut(s) 197, 293, 656
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 3 cut(s) 474, 707, 732
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 5 cut(s) 30, 169, 217, 370, 375
Bse21I CCTNAGG 1 cut(s) 727
BseBI CCWGG 2 cut(s) 483, 808
BseDI CCNNGG 3 cut(s) 197, 293, 656
BseLI CCNNNNNNNGG 3 cut(s) 474, 707, 732
BseMII CTCAG 3 cut(s) 89, 730, 741
BseNI ACTGG 5 cut(s) 30, 169, 217, 370, 375
BseRI GAGGAG 3 cut(s) 381, 384, 387
BshFI GGCC 4 cut(s) 292, 307, 478, 679
BsiSI CCGG 2 cut(s) 197, 768
BslFI GGGAC 3 cut(s) 215, 328, 344
BslI CCNNNNNNNGG 3 cut(s) 474, 707, 732
BsmAI GTCTC 1 cut(s) 8
BsmBI CGTCTC 1 cut(s) 8
BsmFI GGGAC 3 cut(s) 215, 328, 344
BsnI GGCC 4 cut(s) 292, 307, 478, 679
Bsp143I GATC 3 cut(s) 8, 524, 637
BspACI CCGC 6 cut(s) 147, 158, 161, 401, 407, 675
BspANI GGCC 4 cut(s) 292, 307, 478, 679
BspCNI CTCAG 4 cut(s) 4, 88, 729, 740
BspLI GGNNCC 1 cut(s) 766
BspMAI CTGCAG 4 cut(s) 51, 532, 601, 652
BspOI GCTAGC 1 cut(s) 675
BspPI GGATC 3 cut(s) 16, 532, 632
BsrFI RCCGGY 1 cut(s) 767
BsrI ACTGG 5 cut(s) 30, 169, 217, 370, 375
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 3 cut(s) 197, 293, 656
BssMI GATC 3 cut(s) 8, 524, 637
Bst2UI CCWGG 2 cut(s) 483, 808
Bst4CI ACNGT 6 cut(s) 66, 84, 206, 348, 562, 702
Bst6I CTCTTC 2 cut(s) 269, 275
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 8 cut(s) 51, 95, 476, 532, 663, 673, 677, 769
BstDEI CTNAG 4 cut(s) 12, 75, 716, 727
BstDSI CCRYGG 1 cut(s) 656
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 2 cut(s) 99, 437
BstKTI GATC 3 cut(s) 11, 527, 640
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 3 cut(s) 8, 524, 637
BstMWI GCNNNNNNNGC 6 cut(s) 46, 185, 191, 350, 422, 798
BstNI CCWGG 2 cut(s) 483, 808
BstNSI RCATGY 4 cut(s) 97, 554, 796, 805
BstSCI CCNGG 3 cut(s) 196, 481, 806
BstSFI CTRYAG 5 cut(s) 47, 62, 528, 597, 648
BstX2I RGATCY 3 cut(s) 8, 524, 637
BstXI CCANNNNNNTGG 1 cut(s) 377
BstYI RGATCY 3 cut(s) 8, 524, 637
Bsu36I CCTNAGG 1 cut(s) 727
BsuRI GGCC 4 cut(s) 292, 307, 478, 679
BtgI CCRYGG 1 cut(s) 656
BtsI GCAGTG 2 cut(s) 141, 174
BtsIMutI CAGTG 6 cut(s) 68, 141, 174, 382, 558, 724
Cac8I GCNNGC 8 cut(s) 51, 95, 476, 532, 663, 673, 677, 769
CaiI CAGNNNCTG 2 cut(s) 11, 70
CfoI GCGC 2 cut(s) 99, 437
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 3 cut(s) 305, 653, 677
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 1 cut(s) 759
CviAII CATG 8 cut(s) 94, 250, 256, 535, 551, 707, 793, 802
CviQI GTAC 1 cut(s) 759
DdeI CTNAG 4 cut(s) 12, 75, 716, 727
DpnI GATC 3 cut(s) 10, 526, 639
DpnII GATC 3 cut(s) 8, 524, 637
Eam1104I CTCTTC 2 cut(s) 269, 275
EarI CTCTTC 2 cut(s) 269, 275
EciI GGCGGA 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 727
EcoRII CCWGG 2 cut(s) 481, 806
Esp3I CGTCTC 1 cut(s) 8
FaeI CATG 8 cut(s) 97, 253, 259, 538, 554, 710, 796, 805
FaqI GGGAC 3 cut(s) 215, 328, 344
FatI CATG 8 cut(s) 93, 249, 255, 534, 550, 706, 792, 801
FauI CCCGC 1 cut(s) 668
FspBI CTAG 2 cut(s) 54, 672
GlaI GCGC 2 cut(s) 98, 436
GsuI CTGGAG 3 cut(s) 201, 450, 591
HaeII RGCGCY 1 cut(s) 438
HaeIII GGCC 4 cut(s) 292, 307, 478, 679
HapII CCGG 2 cut(s) 197, 768
HhaI GCGC 2 cut(s) 99, 437
Hin1II CATG 8 cut(s) 97, 253, 259, 538, 554, 710, 796, 805
Hin6I GCGC 2 cut(s) 97, 435
HinP1I GCGC 2 cut(s) 97, 435
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 516
HinfI GANTC 2 cut(s) 73, 722
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 2 cut(s) 197, 768
HphI GGTGA 3 cut(s) 147, 275, 327
Hpy166II GTNNAC 4 cut(s) 174, 367, 698, 746
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 6, 429
Hpy8I GTNNAC 4 cut(s) 174, 367, 698, 746
HpyAV CCTTC 2 cut(s) 348, 651
HpyCH4III ACNGT 6 cut(s) 66, 84, 206, 348, 562, 702
HpyCH4V TGCA 5 cut(s) 49, 530, 599, 650, 665
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 185, 191, 350, 422, 798
HpyF3I CTNAG 4 cut(s) 12, 75, 716, 727
Hsp92II CATG 8 cut(s) 97, 253, 259, 538, 554, 710, 796, 805
HspAI GCGC 2 cut(s) 97, 435
KroI GCCGGC 1 cut(s) 767
KroNI GCCGGC 1 cut(s) 769
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 3 cut(s) 8, 524, 637
LmnI GCTCC 4 cut(s) 182, 199, 588, 764
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 2 cut(s) 54, 672
MaeIII GTNAC 6 cut(s) 66, 78, 84, 139, 333, 702
MalI GATC 3 cut(s) 10, 526, 639
MboI GATC 3 cut(s) 8, 524, 637
MboII GAAGA 2 cut(s) 286, 292
MfeI CAATTG 1 cut(s) 509
MflI RGATCY 3 cut(s) 8, 524, 637
MluCI AATT 1 cut(s) 509
MlyI GAGTC 1 cut(s) 67
MroNI GCCGGC 1 cut(s) 767
MseI TTAA 4 cut(s) 246, 366, 564, 750
MslI CAYNNNNRTG 1 cut(s) 254
MspI CCGG 2 cut(s) 197, 768
MspR9I CCNGG 3 cut(s) 198, 483, 808
MunI CAATTG 1 cut(s) 509
MvaI CCWGG 2 cut(s) 483, 808
MwoI GCNNNNNNNGC 6 cut(s) 46, 185, 191, 350, 422, 798
NaeI GCCGGC 1 cut(s) 769
NciI CCSGG 1 cut(s) 198
NdeII GATC 3 cut(s) 8, 524, 637
NgoMIV GCCGGC 1 cut(s) 767
NheI GCTAGC 1 cut(s) 671
NlaIII CATG 8 cut(s) 97, 253, 259, 538, 554, 710, 796, 805
NlaIV GGNNCC 1 cut(s) 766
NmeAIII GCCGAG 1 cut(s) 318
NmuCI GTSAC 6 cut(s) 66, 78, 84, 139, 333, 702
NspI RCATGY 4 cut(s) 97, 554, 796, 805
PaeI GCATGC 1 cut(s) 97
PciI ACATGT 1 cut(s) 550
PdiI GCCGGC 1 cut(s) 769
PfeI GAWTC 1 cut(s) 722
PflFI GACNNNGTC 2 cut(s) 76, 319
PfoI TCCNGGA 1 cut(s) 806
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PscI ACATGT 1 cut(s) 550
Psp6I CCWGG 2 cut(s) 481, 806
PspGI CCWGG 2 cut(s) 481, 806
PspN4I GGNNCC 1 cut(s) 766
PspPI GGNCC 3 cut(s) 305, 653, 677
PstI CTGCAG 4 cut(s) 51, 532, 601, 652
PstNI CAGNNNCTG 2 cut(s) 11, 70
PsuI RGATCY 3 cut(s) 8, 524, 637
PsyI GACNNNGTC 2 cut(s) 76, 319
RsaI GTAC 1 cut(s) 760
RsaNI GTAC 1 cut(s) 759
RseI CAYNNNNRTG 1 cut(s) 254
SaqAI TTAA 4 cut(s) 246, 366, 564, 750
Sau3AI GATC 3 cut(s) 8, 524, 637
Sau96I GGNCC 3 cut(s) 305, 653, 677
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 3 cut(s) 198, 483, 808
SexAI ACCWGGT 1 cut(s) 481
SfcI CTRYAG 5 cut(s) 47, 62, 528, 597, 648
SinI GGWCC 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 254
SphI GCATGC 1 cut(s) 97
Sse9I AATT 1 cut(s) 509
SsiI CCGC 6 cut(s) 147, 158, 161, 401, 407, 675
SspMI CTAG 2 cut(s) 54, 672
StyD4I CCNGG 3 cut(s) 196, 481, 806
TaaI ACNGT 6 cut(s) 66, 84, 206, 348, 562, 702
TaqI TCGA 1 cut(s) 607
TasI AATT 1 cut(s) 509
TatI WGTACW 1 cut(s) 758
TauI GCSGC 2 cut(s) 149, 163
TfiI GAWTC 1 cut(s) 722
Tru1I TTAA 4 cut(s) 246, 366, 564, 750
Tru9I TTAA 4 cut(s) 246, 366, 564, 750
TscAI CASTG 6 cut(s) 75, 148, 181, 382, 565, 724
TseFI GTSAC 6 cut(s) 66, 78, 84, 139, 333, 702
Tsp45I GTSAC 6 cut(s) 66, 78, 84, 139, 333, 702
TspDTI ATGAA 4 cut(s) 266, 287, 633, 644
TspGWI ACGGA 1 cut(s) 638
TspRI CASTG 6 cut(s) 75, 148, 181, 382, 565, 724
Tth111I GACNNNGTC 2 cut(s) 76, 319
VpaK11BI GGWCC 1 cut(s) 653
XceI RCATGY 4 cut(s) 97, 554, 796, 805
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XspI CTAG 2 cut(s) 54, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.