Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003400

Physical Location & Seq

Genomic Coordinates Reverse (-)

14408693 .. 14414680

Gene Structure 5988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0174700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGAGGAGCAAAGCACGAAGCAGAAGCAGAAGCAGGGAAGGTTCTGGACATGGGTCACAGCATCAGTGTTATTCAGACTCATTCTCATCTACTTCCCCCAAAATCTCAACCTCTCTTCTCGCCCCGAAGTCTCCACTCCTCTCACCAGCCTTCGTCGCCTGGCCGAAGGATACTGGTTGAAGCAATCATCCATGTCTCCCTACGCAGGATCTATGTACCACGGATCTCCTCTGTTACTCTCGCTTCTTGGCCCACTCACAGTCAAACGAATTGACGGGCAGCCCAGTCATCTTCTATGCAGTTTGGTTTTTGTGGCTGCAGATATATTGAATTCATTGCTCATTCGTGCTACTGGTCAGACTCTTCAGATTGCATATAGGCAGAGTTTGAGATCACTAGATCTTGACATGATATCAGAAATGGAGATTCTCCCTTCGGGGGATATTGCTGCTTTAATCTACTTGTGGAACCCTTTCACAATAGCTGCATGTGTGGGGTTGTCAACATCTCCAATTGAGAACCTGGCCATCATGTTAGCCCTCTATGGAGCATGTAAACGACTGGTTCCCTTGGCTGCTTTTGGATGGGTCATGGCAACCCATCTGTCTCTTTATCCTATAATTCTTATTATTCCGATTATTCTCTTATTAGGTAATGGTCCAGATACTCCTAGGAAATTGTTCCTGCTGAGGAGACATGGTAAAGTTGAAGAAAACTCCTCGAGTGATAGTTGTCAACAGGAGAAAGTTATTGATCAATCAAAACTACTCGATGTCTTTTCTTGGAGACCTGTCATGTTTTTCTTATTGTGGACTGTTATGTGGTCAGTCTATGTGTTACTTCTATGTGGCGTATCCGTTAAACAGTATGGAGGTCTTTGGGAGATGTTTACAAGTATGTACGGTTTCATTCTCACAGTACAAGATTTGTCTCCAAACATAGGTGTCTTATGGTATTTCTTTGCTGAGGTCTTTGATTTTTTCAGAAATTTTTTCCTGATTGTATTCCATATGAATATTCTCTTTATGATATTCCCATTGGCCATACGGCTGCACCACCGCCCCTGCTTTCTTGCTTTTGTCTACATTACAATCTCTTCAATGCTCAAGTCTTATCCTTCTGTTGGGGATTCAGCTTTGTACTTTGGTTTGTTGGGCTGGTTTGTTTACGAACTGTCAGAAATGAAATTCTCGTTCTTCCTCTTCTGTGTTTATATTGGGGTTTCCCTCCTTAGCCCTGTGATGCACAACCTATGGATATGGAGGGGAACAGGAAACGCAAATTTCTACTTTGCCACTGCAATGGCTTATGCGTGTTTGCAGATTGTTTTGGTGGTTGAAAGTGTAAGTGCAATGCTCAATCACGACAGGAAGTTGAGAAAGCTATCAAGTGCAAAGCTTCAAGATGGCAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

472

Amino Acids

53.69

Weight (kDa)

8.98

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-U	PF06728	21 - 437	5e-113	GPI transamidase subunit PIG-U

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49730 AT5G49730 AT5G49740 AT5G49740 AT5G49740
fragaria_vesca	FvH4_5g27150 FvH4_5g27150 FvH4_5g27150 FvH4_5g27150 FvH4_5g27150
malus_domestica	MD08G1250800.v1.1 MD15G1140500.v1.1
prunus_persica	Prupe.1G587800_v2.0.a1 Prupe.1G587800_v2.0.a1
pyrus_communis	pycom08g21770 pycom15g12700
rosa_chinensis	RchiOBHm_Chr7g0218161 RchiOBHm_Chr7g0218171
rosa_laevigata	RLG00000002392
rosa_multiflora	Rmu_sc0003627.1_g000006 Rmu_sc0003627.1_g000007
rosa_roxburghii	Rroxscaffold_3G00241250 Rroxscaffold_3G00241260
rosa_rugosa	Rorug07G0174700 Rorug07G0174700 Rorug07G0174800
rosa_samantha	Rh7AG317100 Rh7AG317200 Rh7BG308300 Rh7BG315800 Rh7CG333900 Rh7CG334000 Rh7DG316000 Rh7DG316200
rosa_wichuraiana	Rw7G026830 Rw7G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1083
AciI	CCGC	1 cut(s)	1060
AclWI	GGATC	2 cut(s)	217, 232
AcoI	YGGCCR	3 cut(s)	162, 525, 1041
AcsI	RAATTY	4 cut(s)	331, 988, 1187, 1282
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	4 cut(s)	218, 902, 921, 1142
AfiI	CCNNNNNNNGG	4 cut(s)	206, 439, 941, 1124
AgsI	TTSAA	6 cut(s)	181, 331, 710, 1101, 1340, 1403
AjnI	CCWGG	2 cut(s)	159, 522
AluBI	AGCT	4 cut(s)	485, 1136, 1384, 1399
AluI	AGCT	4 cut(s)	485, 1136, 1384, 1399
Alw26I	GTCTC	6 cut(s)	136, 201, 612, 688, 781, 936
AlwI	GGATC	2 cut(s)	217, 232
Ama87I	CYCGRG	1 cut(s)	721
AoxI	GGCC	4 cut(s)	162, 250, 525, 1041
ApeKI	GCWGC	6 cut(s)	280, 317, 449, 485, 575, 1051
ApoI	RAATTY	4 cut(s)	331, 988, 1187, 1282
Asp700I	GAANNNNTTC	2 cut(s)	473, 680
AspA2I	CCTAGG	1 cut(s)	671
AspS9I	GGNCC	2 cut(s)	251, 659
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	721
AvaII	GGWCC	1 cut(s)	659
AvrII	CCTAGG	1 cut(s)	671
BalI	TGGCCA	2 cut(s)	527, 1043
BbvCI	CCTCAGC	2 cut(s)	689, 966
BbvI	GCAGC	6 cut(s)	292, 304, 436, 472, 562, 1038
BccI	CCATC	4 cut(s)	536, 579, 609, 1400
BceAI	ACGGC	1 cut(s)	1064
BciT130I	CCWGG	2 cut(s)	161, 524
BciVI	GTATCC	2 cut(s)	164, 865
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	6 cut(s)	136, 201, 612, 688, 781, 936
BfaI	CTAG	2 cut(s)	398, 672
BfmI	CTRYAG	1 cut(s)	318
BfuI	GTATCC	2 cut(s)	164, 865
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	6 cut(s)	281, 318, 450, 486, 576, 1052
BlnI	CCTAGG	1 cut(s)	671
BlsI	GCNGC	6 cut(s)	282, 319, 451, 487, 577, 1053
Bme1390I	CCNGG	2 cut(s)	161, 524
Bme18I	GGWCC	1 cut(s)	659
BmeT110I	CYCGRG	1 cut(s)	721
BmgT120I	GGNCC	2 cut(s)	251, 659
BmiI	GGNNCC	2 cut(s)	470, 567
BmrFI	CCNGG	2 cut(s)	161, 524
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	2 cut(s)	71, 1233
BmuI	ACTGGG	1 cut(s)	279
BoxI	GACNNNNGTC	1 cut(s)	53
Bpu10I	CCTNAGC	3 cut(s)	689, 966, 1232
BpuEI	CTTGAG	1 cut(s)	1091
BsaI	GGTCTC	1 cut(s)	781
BsaJI	CCNNGG	3 cut(s)	220, 570, 671
BsaXI	ACNNNNNCTCC	2 cut(s)	685, 715
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 439, 941, 1124
Bse1I	ACTGG	4 cut(s)	179, 285, 358, 567
Bse3DI	GCAATG	3 cut(s)	335, 1308, 1359
BseBI	CCWGG	2 cut(s)	161, 524
BseDI	CCNNGG	3 cut(s)	220, 570, 671
BseGI	GGATG	2 cut(s)	188, 590
BseLI	CCNNNNNNNGG	4 cut(s)	206, 439, 941, 1124
BseMI	GCAATG	3 cut(s)	335, 1308, 1359
BseMII	CTCAG	2 cut(s)	680, 957
BseNI	ACTGG	4 cut(s)	179, 285, 358, 567
BseRI	GAGGAG	5 cut(s)	20, 129, 219, 706, 709
BseXI	GCAGC	6 cut(s)	292, 304, 436, 472, 562, 1038
BsgI	GTGCAG	1 cut(s)	1037
BshFI	GGCC	4 cut(s)	164, 252, 527, 1043
BsiHKCI	CYCGRG	1 cut(s)	721
BslI	CCNNNNNNNGG	4 cut(s)	206, 439, 941, 1124
BsmAI	GTCTC	6 cut(s)	136, 201, 612, 688, 781, 936
BsnI	GGCC	4 cut(s)	164, 252, 527, 1043
Bso31I	GGTCTC	1 cut(s)	781
BsoBI	CYCGRG	1 cut(s)	721
Bsp143I	GATC	5 cut(s)	209, 224, 392, 400, 754
BspACI	CCGC	1 cut(s)	1060
BspANI	GGCC	4 cut(s)	164, 252, 527, 1043
BspCNI	CTCAG	2 cut(s)	681, 958
BspHI	TCATGA	1 cut(s)	1415
BspLI	GGNNCC	2 cut(s)	470, 567
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	2 cut(s)	217, 232
BspTNI	GGTCTC	1 cut(s)	781
BsrDI	GCAATG	3 cut(s)	335, 1308, 1359
BsrI	ACTGG	4 cut(s)	179, 285, 358, 567
BssECI	CCNNGG	3 cut(s)	220, 570, 671
BssMI	GATC	5 cut(s)	209, 224, 392, 400, 754
BssT1I	CCWWGG	2 cut(s)	570, 671
Bst2UI	CCWGG	2 cut(s)	161, 524
Bst4CI	ACNGT	6 cut(s)	262, 817, 867, 905, 919, 1176
Bst6I	CTCTTC	4 cut(s)	121, 369, 1102, 1208
BstDEI	CTNAG	3 cut(s)	689, 966, 1232
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	188, 590
BstKTI	GATC	5 cut(s)	212, 227, 395, 403, 757
BstMAI	GTCTC	6 cut(s)	136, 201, 612, 688, 781, 936
BstMBI	GATC	5 cut(s)	209, 224, 392, 400, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	2 cut(s)	161, 524
BstNSI	RCATGY	2 cut(s)	492, 555
BstPAI	GACNNNNGTC	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	159, 522
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	6 cut(s)	292, 304, 436, 472, 562, 1038
BstX2I	RGATCY	3 cut(s)	209, 224, 400
BstXI	CCANNNNNNTGG	1 cut(s)	1303
BstYI	RGATCY	3 cut(s)	209, 224, 400
BsuI	GTATCC	2 cut(s)	164, 865
BsuRI	GGCC	4 cut(s)	164, 252, 527, 1043
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	188, 590
BtsI	GCAGTG	1 cut(s)	1296
BtsIMutI	CAGTG	2 cut(s)	72, 1296
CciI	TCATGA	1 cut(s)	1415
Cfr13I	GGNCC	2 cut(s)	251, 659
Csp6I	GTAC	4 cut(s)	217, 901, 920, 1141
CviQI	GTAC	4 cut(s)	217, 901, 920, 1141
DdeI	CTNAG	3 cut(s)	689, 966, 1232
DpnI	GATC	5 cut(s)	211, 226, 394, 402, 756
DpnII	GATC	5 cut(s)	209, 224, 392, 400, 754
EaeI	YGGCCR	3 cut(s)	162, 525, 1041
Eam1104I	CTCTTC	4 cut(s)	121, 369, 1102, 1208
EarI	CTCTTC	4 cut(s)	121, 369, 1102, 1208
Eco130I	CCWWGG	2 cut(s)	570, 671
Eco31I	GGTCTC	1 cut(s)	781
Eco32I	GATATC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	659
Eco57I	CTGAAG	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	721
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	159, 522
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	570, 671
ErhI	CCWWGG	2 cut(s)	570, 671
FauNDI	CATATG	1 cut(s)	1011
FbaI	TGATCA	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	1083
Fnu4HI	GCNGC	6 cut(s)	281, 318, 450, 486, 576, 1052
FokI	GGATG	2 cut(s)	175, 597
Fsp4HI	GCNGC	6 cut(s)	281, 318, 450, 486, 576, 1052
FspBI	CTAG	2 cut(s)	398, 672
GluI	GCNGC	6 cut(s)	281, 318, 450, 486, 576, 1052
HaeIII	GGCC	4 cut(s)	164, 252, 527, 1043
HincII	GTYRAC	2 cut(s)	504, 737
HindII	GTYRAC	2 cut(s)	504, 737
HindIII	AAGCTT	1 cut(s)	1397
HinfI	GANTC	4 cut(s)	78, 361, 427, 1130
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	7 cut(s)	504, 557, 737, 813, 891, 1084, 1168
Hpy188I	TCNGA	7 cut(s)	77, 360, 369, 418, 636, 986, 1180
Hpy188III	TCNNGA	7 cut(s)	46, 404, 662, 997, 1364, 1403, 1416
Hpy8I	GTNNAC	7 cut(s)	504, 557, 737, 813, 891, 1084, 1168
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	5 cut(s)	33, 161, 161, 444, 1128
HpyCH4III	ACNGT	6 cut(s)	262, 817, 867, 905, 919, 1176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	3 cut(s)	689, 966, 1232
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	5 cut(s)	209, 224, 392, 400, 754
LmnI	GCTCC	2 cut(s)	7, 548
Lsp1109I	GCAGC	6 cut(s)	292, 304, 436, 472, 562, 1038
LweI	GCATC	2 cut(s)	71, 1233
MaeI	CTAG	2 cut(s)	398, 672
MaeIII	GTNAC	3 cut(s)	55, 234, 837
MalI	GATC	5 cut(s)	211, 226, 394, 402, 756
MboI	GATC	5 cut(s)	209, 224, 392, 400, 754
MboII	GAAGA	7 cut(s)	108, 284, 356, 722, 1089, 1189, 1195
MfeI	CAATTG	1 cut(s)	513
MflI	RGATCY	3 cut(s)	209, 224, 400
MlsI	TGGCCA	2 cut(s)	527, 1043
MluCI	AATT	8 cut(s)	270, 331, 513, 621, 677, 988, 1187, 1282
MluNI	TGGCCA	2 cut(s)	527, 1043
MlyI	GAGTC	2 cut(s)	72, 355
Mox20I	TGGCCA	2 cut(s)	527, 1043
MroXI	GAANNNNTTC	2 cut(s)	473, 680
MscI	TGGCCA	2 cut(s)	527, 1043
MseI	TTAA	2 cut(s)	455, 861
MslI	CAYNNNNRTG	1 cut(s)	1301
Msp20I	TGGCCA	2 cut(s)	527, 1043
MspR9I	CCNGG	2 cut(s)	161, 524
MunI	CAATTG	1 cut(s)	513
MvaI	CCWGG	2 cut(s)	161, 524
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeI	CATATG	1 cut(s)	1011
NdeII	GATC	5 cut(s)	209, 224, 392, 400, 754
NlaIV	GGNNCC	2 cut(s)	470, 567
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	2 cut(s)	492, 555
PaeR7I	CTCGAG	1 cut(s)	721
PagI	TCATGA	1 cut(s)	1415
PdmI	GAANNNNTTC	2 cut(s)	473, 680
PfeI	GAWTC	2 cut(s)	427, 1130
PkrI	GCNGC	6 cut(s)	282, 319, 451, 487, 577, 1053
PleI	GAGTC	2 cut(s)	72, 355
PpsI	GAGTC	2 cut(s)	72, 355
PshAI	GACNNNNGTC	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	159, 522
PspGI	CCWGG	2 cut(s)	159, 522
PspN4I	GGNNCC	2 cut(s)	470, 567
PspPI	GGNCC	2 cut(s)	251, 659
PspXI	VCTCGAGB	1 cut(s)	721
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	3 cut(s)	209, 224, 400
RsaI	GTAC	4 cut(s)	218, 902, 921, 1142
RsaNI	GTAC	4 cut(s)	217, 901, 920, 1141
RseI	CAYNNNNRTG	1 cut(s)	1301
SaqAI	TTAA	2 cut(s)	455, 861
SatI	GCNGC	6 cut(s)	281, 318, 450, 486, 576, 1052
Sau3AI	GATC	5 cut(s)	209, 224, 392, 400, 754
Sau96I	GGNCC	2 cut(s)	251, 659
SchI	GAGTC	2 cut(s)	72, 355
ScrFI	CCNGG	2 cut(s)	161, 524
SfaNI	GCATC	2 cut(s)	71, 1233
SfcI	CTRYAG	1 cut(s)	318
Sfr274I	CTCGAG	1 cut(s)	721
SinI	GGWCC	1 cut(s)	659
SlaI	CTCGAG	1 cut(s)	721
SmiMI	CAYNNNNRTG	1 cut(s)	1301
SmlI	CTYRAG	2 cut(s)	721, 1106
SmoI	CTYRAG	2 cut(s)	721, 1106
Sse9I	AATT	8 cut(s)	270, 331, 513, 621, 677, 988, 1187, 1282
SsiI	CCGC	1 cut(s)	1060
SspI	AATATT	1 cut(s)	1018
SspMI	CTAG	2 cut(s)	398, 672
StyD4I	CCNGG	2 cut(s)	159, 522
StyI	CCWWGG	2 cut(s)	570, 671
TaaI	ACNGT	6 cut(s)	262, 817, 867, 905, 919, 1176
TaqI	TCGA	2 cut(s)	722, 771
TasI	AATT	8 cut(s)	270, 331, 513, 621, 677, 988, 1187, 1282
TatI	WGTACW	2 cut(s)	919, 1140
TfiI	GAWTC	2 cut(s)	427, 1130
Tru1I	TTAA	2 cut(s)	455, 861
Tru9I	TTAA	2 cut(s)	455, 861
TscAI	CASTG	2 cut(s)	72, 1303
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	6 cut(s)	280, 317, 449, 485, 575, 1051
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	324, 898, 1028, 1199
TspGWI	ACGGA	2 cut(s)	237, 847
TspRI	CASTG	2 cut(s)	72, 1303
VpaK11BI	GGWCC	1 cut(s)	659
XapI	RAATTY	4 cut(s)	331, 988, 1187, 1282
XceI	RCATGY	2 cut(s)	492, 555
XhoI	CTCGAG	1 cut(s)	721
XmaJI	CCTAGG	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	1083
XmnI	GAANNNNTTC	2 cut(s)	473, 680
XspI	CTAG	2 cut(s)	398, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.