Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003400

Physical Location & Seq

Genomic Coordinates Reverse (-)

37123107 .. 37125826

Gene Structure 2720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG316000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGCTGCTCTTTGCTATCCACGGCCTGTTATATGTATTGATATGGACAATTAAGGGTTGTTTCCTTAGTCAAATATTGGAGTGGAAGGATACTGGTGTTGCCAATCTTGCAGGATCAATTAGCCTTAGTGTTGGTCTGTTGATGTGGATCACAACACTTCCTCCGGTCAGAAAGCGGAATTTTGAGTTGTTCCTCTACACTCATCAGCTATACGTCATCTTCGTGGTCTTTTTGGCTTTGCACATTGGTTATCTCGTTTTTCCTACAGCTGCAGGCCCCATATTTATTTTTGTTCTTGATCGTTTTCTGAGGTTCTGTCAATCACGAAAGAGTGTTGATATAATTTCAGCCAAGTGCCTTCCATGTGGAACTGTAGAGTTGGTCCTCGCAAAACCCGAAAGTTTGCGGTACAGCGCCCTCAGTTTTGTCTTTGTTCGAATTTGGGAGCTATCAAGGCTGCAATGGCATCCTTTCAGTGTTTCGTCCAGTCCTATGGATGGTAAACATCATATATCTGTTTTGATAAAGGCTATTGGGAAATGGACTGAAAAGCTAAGAGATTCTGTCTTGAAAAATTTGGAGCTACCTTGCACAAAGTTAACAATTTCTGTTGAGGGTCCTTACGGGCATGAAAATCCGTACCACATGATGTATGAAAATCTCATCTTAGTAGCAGGTGGCATTGGGATTTCACCTTTCTTGGCTGTCTTAAGTGACATTCTCCACTCTGTTAAGGAAGGAAAACCTTGCCTACCAAGAAATATTTTACTTGTCTGGGCAGTCAAAAGATCAGATGAGCTTTCTCTTCTTTCAACCATTGGCATGGACTCAACTATCTATCCATCTTTCTCTAATAAACTAAATCTTCAGGCCGATATTTACGTTACTCGGGAGTCTGAATTTCCATCGGAACATGGTGAAGTTGGAAATAGTACTGCAGATTCTTCTGATCTATGTCCCATGTCTGAAAGGTCTGGAATGTCCGTTTTGGTTGGTACTGGACATAATGTATGGTCTTGCCTGTATGTTATCTCATCTACTTTAGGCTTTGTCATCTTGTTGGGTTTGTTGGATTTCTTCTACATCAACCCTTTTGATATAACTTCATGGTCATACAAAGGATTTCTATTCTTAGCCTGTATGGTCGCAAGTGTCTTCATCTTTGGTGGTCTGGTGGTTTGTTTATGGCATCTTTCGGAGAAAAGAACTTCAGCAGAGGAAAAATGTGAGGATGATGAATCAAAATTTGGTAAGATTGAGCACACAGAAACTGTAACTTACAATGTTGCACACCAGGAAAGTCCTGCAAGTTTAACCAGGAGCATTCGTTATGGTGGAAGGCCAGACTTTAAAGAAATTTTTGGAAGCGTATCAAAGAATTGGGGCCATGTTGTTGTGGGTGTCATTGTGTGTGGTCCTCCAACTCTTCAATCAAGTGTAGCTAAAGAAATCAGGTCACAAAGTATAAGAAGACAATCTGGAGATCCTATCTACCATTTCAACAGCCATAGCTTTAGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

507

Amino Acids

56.71

Weight (kDa)

7.25

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ferric_reduct	PF01794	2 - 78	1.5e-11	Ferric reductase like transmembrane component
FAD_binding_8	PF08022	111 - 211	8.1e-20	FAD-binding domain
NAD_binding_6	PF08030	218 - 310	6.6e-11	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49730 AT5G49730 AT5G49740 AT5G49740 AT5G49740
fragaria_vesca	FvH4_5g27150 FvH4_5g27150 FvH4_5g27150 FvH4_5g27150 FvH4_5g27150
malus_domestica	MD08G1250800.v1.1 MD15G1140500.v1.1
prunus_persica	Prupe.1G587800_v2.0.a1 Prupe.1G587800_v2.0.a1
pyrus_communis	pycom08g21770 pycom15g12700
rosa_chinensis	RchiOBHm_Chr7g0218161 RchiOBHm_Chr7g0218171
rosa_laevigata	RLG00000002392
rosa_multiflora	Rmu_sc0003627.1_g000006 Rmu_sc0003627.1_g000007
rosa_roxburghii	Rroxscaffold_3G00241250 Rroxscaffold_3G00241260
rosa_rugosa	Rorug07G0174700 Rorug07G0174700 Rorug07G0174800
rosa_samantha	Rh7AG317100 Rh7AG317200 Rh7BG308300 Rh7BG315800 Rh7CG333900 Rh7CG334000 Rh7DG316000 Rh7DG316200
rosa_wichuraiana	Rw7G026830 Rw7G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	665
Acc36I	ACCTGC	1 cut(s)	665
AciI	CCGC	2 cut(s)	175, 406
AclWI	GGATC	3 cut(s)	121, 155, 1478
AcsI	RAATTY	6 cut(s)	178, 438, 574, 899, 1244, 1356
AcuI	CTGAAG	2 cut(s)	851, 1194
AfaI	GTAC	4 cut(s)	410, 641, 934, 997
AfiI	CCNNNNNNNGG	1 cut(s)	497
AflII	CTTAAG	1 cut(s)	709
AgsI	TTSAA	4 cut(s)	571, 813, 1430, 1501
AjnI	CCWGG	2 cut(s)	1293, 1316
AjuI	GAANNNNNNNTTGG	2 cut(s)	1230, 1262
AluBI	AGCT	8 cut(s)	208, 269, 448, 553, 583, 799, 1442, 1512
AluI	AGCT	8 cut(s)	208, 269, 448, 553, 583, 799, 1442, 1512
Alw21I	GWGCWC	1 cut(s)	1263
AlwI	GGATC	3 cut(s)	121, 155, 1478
AlwNI	CAGNNNCTG	1 cut(s)	1271
Ama87I	CYCGRG	1 cut(s)	888
AoxI	GGCC	5 cut(s)	22, 274, 870, 1340, 1384
ApeKI	GCWGC	3 cut(s)	4, 269, 457
ApoI	RAATTY	6 cut(s)	178, 438, 574, 899, 1244, 1356
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	5 cut(s)	275, 382, 617, 1384, 1415
AsuHPI	GGTGA	2 cut(s)	684, 929
AsuII	TTCGAA	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	888
AvaII	GGWCC	3 cut(s)	382, 617, 1415
BaeI	ACNNNNGTAYC	2 cut(s)	81, 114
BbsI	GAAGAC	2 cut(s)	1147, 1477
Bbv12I	GWGCWC	1 cut(s)	1263
BbvI	GCAGC	2 cut(s)	256, 444
BccI	CCATC	3 cut(s)	491, 850, 913
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	1295, 1318
BciVI	GTATCC	1 cut(s)	82
BfmI	CTRYAG	4 cut(s)	264, 270, 372, 936
BfoI	RGCGCY	1 cut(s)	417
BfrI	CTTAAG	1 cut(s)	709
BfuAI	ACCTGC	1 cut(s)	665
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	3 cut(s)	5, 270, 458
BlsI	GCNGC	3 cut(s)	6, 271, 459
BmcAI	AGTACT	1 cut(s)	934
Bme1390I	CCNGG	2 cut(s)	1295, 1318
Bme18I	GGWCC	3 cut(s)	382, 617, 1415
BmeT110I	CYCGRG	1 cut(s)	888
BmgT120I	GGNCC	5 cut(s)	275, 382, 617, 1384, 1415
BmiI	GGNNCC	3 cut(s)	277, 618, 1385
BmrFI	CCNGG	2 cut(s)	1295, 1318
BmsI	GCATC	2 cut(s)	475, 1198
BpiI	GAAGAC	2 cut(s)	1147, 1477
BpmI	CTGGAG	1 cut(s)	1500
Bpu14I	TTCGAA	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	19
BsaWI	WCCGGW	1 cut(s)	163
BsaXI	ACNNNNNCTCC	4 cut(s)	145, 175, 1312, 1342
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse1I	ACTGG	3 cut(s)	97, 486, 1003
Bse3DI	GCAATG	1 cut(s)	467
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	1295, 1318
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	3 cut(s)	466, 502, 1237
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	2 cut(s)	299, 433
BseNI	ACTGG	3 cut(s)	97, 486, 1003
BseXI	GCAGC	2 cut(s)	256, 444
BshFI	GGCC	5 cut(s)	24, 276, 872, 1342, 1386
BsiHKAI	GWGCWC	1 cut(s)	1263
BsiHKCI	CYCGRG	1 cut(s)	888
BsiSI	CCGG	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	942
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	942
BsmI	GAATGC	1 cut(s)	1323
BsnI	GGCC	5 cut(s)	24, 276, 872, 1342, 1386
BsoBI	CYCGRG	1 cut(s)	888
Bsp119I	TTCGAA	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	1263
Bsp143I	GATC	6 cut(s)	113, 147, 298, 788, 949, 1483
BspACI	CCGC	2 cut(s)	175, 406
BspANI	GGCC	5 cut(s)	24, 276, 872, 1342, 1386
BspCNI	CTCAG	2 cut(s)	300, 432
BspLI	GGNNCC	3 cut(s)	277, 618, 1385
BspMAI	CTGCAG	2 cut(s)	274, 940
BspMI	ACCTGC	1 cut(s)	665
BspPI	GGATC	3 cut(s)	121, 155, 1478
BspT104I	TTCGAA	1 cut(s)	436
BspTI	CTTAAG	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	467
BsrI	ACTGG	3 cut(s)	97, 486, 1003
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	6 cut(s)	113, 147, 298, 788, 949, 1483
Bst2UI	CCWGG	2 cut(s)	1295, 1318
Bst4CI	ACNGT	2 cut(s)	373, 1273
Bst6I	CTCTTC	2 cut(s)	810, 1431
BstAFI	CTTAAG	1 cut(s)	709
BstBI	TTCGAA	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	7 cut(s)	65, 125, 308, 419, 554, 667, 1132
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	3 cut(s)	466, 502, 1237
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	6 cut(s)	116, 150, 301, 791, 952, 1486
BstMBI	GATC	6 cut(s)	113, 147, 298, 788, 949, 1483
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 454, 463
BstNI	CCWGG	2 cut(s)	1295, 1318
BstSCI	CCNGG	2 cut(s)	1293, 1316
BstSFI	CTRYAG	4 cut(s)	264, 270, 372, 936
BstV1I	GCAGC	2 cut(s)	256, 444
BstV2I	GAAGAC	2 cut(s)	1147, 1477
BstX2I	RGATCY	1 cut(s)	1483
BstXI	CCANNNNNNTGG	2 cut(s)	493, 823
BstYI	RGATCY	1 cut(s)	1483
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	5 cut(s)	24, 276, 872, 1342, 1386
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	466, 502, 1237
BtsIMutI	CAGTG	1 cut(s)	481
BveI	ACCTGC	1 cut(s)	665
Cac8I	GCNNGC	1 cut(s)	274
CaiI	CAGNNNCTG	1 cut(s)	1271
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	5 cut(s)	275, 382, 617, 1384, 1415
Csp6I	GTAC	4 cut(s)	409, 640, 933, 996
CviAII	CATG	8 cut(s)	363, 629, 646, 823, 914, 961, 1107, 1388
CviQI	GTAC	4 cut(s)	409, 640, 933, 996
DdeI	CTNAG	7 cut(s)	65, 125, 308, 419, 554, 667, 1132
DpnI	GATC	6 cut(s)	115, 149, 300, 790, 951, 1485
DpnII	GATC	6 cut(s)	113, 147, 298, 788, 949, 1483
DraI	TTTAAA	1 cut(s)	1351
Eam1104I	CTCTTC	2 cut(s)	810, 1431
EarI	CTCTTC	2 cut(s)	810, 1431
Eco47I	GGWCC	3 cut(s)	382, 617, 1415
Eco57I	CTGAAG	2 cut(s)	851, 1194
Eco88I	CYCGRG	1 cut(s)	888
EcoO109I	RGGNCCY	2 cut(s)	275, 617
EcoRII	CCWGG	2 cut(s)	1293, 1316
FaeI	CATG	8 cut(s)	366, 632, 649, 826, 917, 964, 1110, 1391
FaqI	GGGAC	1 cut(s)	942
FatI	CATG	8 cut(s)	362, 628, 645, 822, 913, 960, 1106, 1387
Fnu4HI	GCNGC	3 cut(s)	5, 270, 458
FokI	GGATG	3 cut(s)	453, 509, 1244
Fsp4HI	GCNGC	3 cut(s)	5, 270, 458
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	3 cut(s)	5, 270, 458
GsuI	CTGGAG	1 cut(s)	1500
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	5 cut(s)	24, 276, 872, 1342, 1386
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	8 cut(s)	366, 632, 649, 826, 917, 964, 1110, 1391
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	1 cut(s)	600
HindII	GTYRAC	1 cut(s)	600
HinfI	GANTC	5 cut(s)	560, 827, 893, 941, 1238
HpaI	GTTAAC	1 cut(s)	600
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	684, 929
Hpy166II	GTNNAC	2 cut(s)	503, 600
Hpy188I	TCNGA	8 cut(s)	170, 309, 793, 898, 910, 949, 967, 1198
Hpy188III	TCNNGA	6 cut(s)	296, 324, 568, 890, 975, 1479
Hpy8I	GTNNAC	2 cut(s)	503, 600
HpyAV	CCTTC	4 cut(s)	79, 368, 731, 1332
HpyCH4III	ACNGT	2 cut(s)	373, 1273
HpyCH4IV	ACGT	2 cut(s)	213, 882
HpyCH4V	TGCA	8 cut(s)	110, 241, 272, 460, 591, 938, 1289, 1307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 454, 463
HpyF3I	CTNAG	7 cut(s)	65, 125, 308, 419, 554, 667, 1132
HpySE526I	ACGT	2 cut(s)	213, 882
Hsp92II	CATG	8 cut(s)	366, 632, 649, 826, 917, 964, 1110, 1391
HspAI	GCGC	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	600
Kzo9I	GATC	6 cut(s)	113, 147, 298, 788, 949, 1483
LmnI	GCTCC	3 cut(s)	445, 580, 1320
Lsp1109I	GCAGC	2 cut(s)	256, 444
LweI	GCATC	2 cut(s)	475, 1198
MaeII	ACGT	2 cut(s)	213, 882
MaeIII	GTNAC	4 cut(s)	713, 883, 1273, 1455
MalI	GATC	6 cut(s)	115, 149, 300, 790, 951, 1485
MboI	GATC	6 cut(s)	113, 147, 298, 788, 949, 1483
MboII	GAAGA	8 cut(s)	211, 797, 857, 936, 1069, 1147, 1418, 1482
MflI	RGATCY	1 cut(s)	1483
MhlI	GDGCHC	1 cut(s)	1263
MlyI	GAGTC	2 cut(s)	821, 902
MmeI	TCCRAC	3 cut(s)	904, 1050, 1445
MnlI	CCTC	9 cut(s)	171, 203, 303, 395, 428, 607, 1210, 1222, 1428
MseI	TTAA	6 cut(s)	51, 599, 710, 732, 1313, 1350
MslI	CAYNNNNRTG	2 cut(s)	221, 821
MspA1I	CMGCKG	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	709
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	1295, 1318
Mva1269I	GAATGC	1 cut(s)	1323
MvaI	CCWGG	2 cut(s)	1295, 1318
MwoI	GCNNNNNNNGC	3 cut(s)	107, 454, 463
NdeII	GATC	6 cut(s)	113, 147, 298, 788, 949, 1483
NlaIII	CATG	8 cut(s)	366, 632, 649, 826, 917, 964, 1110, 1391
NlaIV	GGNNCC	3 cut(s)	277, 618, 1385
NmuCI	GTSAC	2 cut(s)	713, 1455
NspV	TTCGAA	1 cut(s)	436
PaqCI	CACCTGC	1 cut(s)	665
PcsI	WCGNNNNNNNCGW	2 cut(s)	219, 393
PctI	GAATGC	1 cut(s)	1323
PfeI	GAWTC	3 cut(s)	560, 941, 1238
PkrI	GCNGC	3 cut(s)	6, 271, 459
PleI	GAGTC	2 cut(s)	821, 901
PpsI	GAGTC	2 cut(s)	821, 901
PpuMI	RGGWCCY	1 cut(s)	617
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	1293, 1316
PspGI	CCWGG	2 cut(s)	1293, 1316
PspN4I	GGNNCC	3 cut(s)	277, 618, 1385
PspPI	GGNCC	5 cut(s)	275, 382, 617, 1384, 1415
PspPPI	RGGWCCY	1 cut(s)	617
PstI	CTGCAG	2 cut(s)	274, 940
PstNI	CAGNNNCTG	1 cut(s)	1271
PsuI	RGATCY	1 cut(s)	1483
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	4 cut(s)	410, 641, 934, 997
RsaNI	GTAC	4 cut(s)	409, 640, 933, 996
RseI	CAYNNNNRTG	2 cut(s)	221, 821
SaqAI	TTAA	6 cut(s)	51, 599, 710, 732, 1313, 1350
SatI	GCNGC	3 cut(s)	5, 270, 458
Sau3AI	GATC	6 cut(s)	113, 147, 298, 788, 949, 1483
Sau96I	GGNCC	5 cut(s)	275, 382, 617, 1384, 1415
ScaI	AGTACT	1 cut(s)	934
SchI	GAGTC	2 cut(s)	821, 902
ScrFI	CCNGG	2 cut(s)	1295, 1318
SduI	GDGCHC	1 cut(s)	1263
SfaNI	GCATC	2 cut(s)	475, 1198
SfcI	CTRYAG	4 cut(s)	264, 270, 372, 936
SfuI	TTCGAA	1 cut(s)	436
SinI	GGWCC	3 cut(s)	382, 617, 1415
SmiMI	CAYNNNNRTG	2 cut(s)	221, 821
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
SsiI	CCGC	2 cut(s)	175, 406
SspI	AATATT	2 cut(s)	75, 763
StyD4I	CCNGG	2 cut(s)	1293, 1316
TaaI	ACNGT	2 cut(s)	373, 1273
TaiI	ACGT	2 cut(s)	216, 885
TaqI	TCGA	1 cut(s)	436
TatI	WGTACW	1 cut(s)	932
TfiI	GAWTC	3 cut(s)	560, 941, 1238
Tru1I	TTAA	6 cut(s)	51, 599, 710, 732, 1313, 1350
Tru9I	TTAA	6 cut(s)	51, 599, 710, 732, 1313, 1350
TscAI	CASTG	1 cut(s)	481
TseFI	GTSAC	2 cut(s)	713, 1455
TseI	GCWGC	3 cut(s)	4, 269, 457
Tsp45I	GTSAC	2 cut(s)	713, 1455
TspDTI	ATGAA	5 cut(s)	645, 669, 1095, 1147, 1251
TspGWI	ACGGA	2 cut(s)	627, 973
TspRI	CASTG	1 cut(s)	481
Vha464I	CTTAAG	1 cut(s)	709
VpaK11BI	GGWCC	3 cut(s)	382, 617, 1415
XapI	RAATTY	6 cut(s)	178, 438, 574, 899, 1244, 1356
ZrmI	AGTACT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.