Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003400

Physical Location & Seq

Genomic Coordinates Reverse (-)

30497822 .. 30498380

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG315800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGTCGCAAGTGTTTTCATCTTTGGTGGTCTGGTGGTTTCTTTATGGCATCTTTCGGAGAAAAGAACTTCAGCAGAGGAAAAATGTGAGGATGATGAATCAAATTTTGGTAAGATTGAGCACACAGAAACTGTAACTTACAATGTTGCACACCAGGAAAGTCCTGCAAGTTTAACCAGGAGCATTCGTTATGGTGGAAGGCCAGACTTTAAAGAAATTTTTGGAAGCGTATCAAAGAATTGGGGCCATGTTGATGTGGGTGTCATTGTGTGTGGTCCTCCAACTCTTCAATCAAGTGTAGCTAAAGAAATCAGGTCACAAAGTATAAGAAGACAATCTGGAGATCCTATCTACCATTTCAACAGCCATAGCTTTAGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000293 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009767 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016722 GO:0016723 GO:0019684 GO:0022900 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NAD_binding_6

Protein Analysis

127

Amino Acids

14.13

Weight (kDa)

6.28

Isoelectric Point (pI)

60.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_6	PF08030	26 - 102	7.5e-07	Ferric reductase NAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003400)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49730 AT5G49730 AT5G49740 AT5G49740 AT5G49740
fragaria_vesca	FvH4_5g27150 FvH4_5g27150 FvH4_5g27150 FvH4_5g27150 FvH4_5g27150
malus_domestica	MD08G1250800.v1.1 MD15G1140500.v1.1
prunus_persica	Prupe.1G587800_v2.0.a1 Prupe.1G587800_v2.0.a1
pyrus_communis	pycom08g21770 pycom15g12700
rosa_chinensis	RchiOBHm_Chr7g0218161 RchiOBHm_Chr7g0218171
rosa_laevigata	RLG00000002392
rosa_multiflora	Rmu_sc0003627.1_g000006 Rmu_sc0003627.1_g000007
rosa_roxburghii	Rroxscaffold_3G00241250 Rroxscaffold_3G00241260
rosa_rugosa	Rorug07G0174700 Rorug07G0174700 Rorug07G0174800
rosa_samantha	Rh7AG317100 Rh7AG317200 Rh7BG308300 Rh7BG315800 Rh7CG333900 Rh7CG334000 Rh7DG316000 Rh7DG316200
rosa_wichuraiana	Rw7G026830 Rw7G026840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	338
AcsI	RAATTY	2 cut(s)	103, 216
AcuI	CTGAAG	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	290, 361
AjnI	CCWGG	2 cut(s)	153, 176
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	2 cut(s)	302, 372
AluI	AGCT	2 cut(s)	302, 372
Alw21I	GWGCWC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	338
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	2 cut(s)	200, 244
ApoI	RAATTY	2 cut(s)	103, 216
AspS9I	GGNCC	2 cut(s)	244, 275
AvaII	GGWCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	337
Bbv12I	GWGCWC	1 cut(s)	123
BciT130I	CCWGG	2 cut(s)	155, 178
Bme1390I	CCNGG	2 cut(s)	155, 178
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	244, 275
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	2 cut(s)	155, 178
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	337
BpmI	CTGGAG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
BseBI	CCWGG	2 cut(s)	155, 178
BseGI	GGATG	1 cut(s)	97
BshFI	GGCC	2 cut(s)	202, 246
BsiHKAI	GWGCWC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	2 cut(s)	202, 246
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	202, 246
BspLI	GGNNCC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	338
BssMI	GATC	1 cut(s)	343
Bst2UI	CCWGG	2 cut(s)	155, 178
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstNI	CCWGG	2 cut(s)	155, 178
BstSCI	CCNGG	2 cut(s)	153, 176
BstV2I	GAAGAC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	202, 246
BtsCI	GGATG	1 cut(s)	97
CaiI	CAGNNNCTG	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	244, 275
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	5 cut(s)	202, 246, 302, 366, 372
CviKI_1	RGCY	5 cut(s)	202, 246, 302, 366, 372
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
DraI	TTTAAA	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	153, 176
FaeI	CATG	1 cut(s)	251
FaiI	YATR	5 cut(s)	46, 192, 249, 326, 369
FatI	CATG	1 cut(s)	247
FokI	GGATG	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	202, 246
Hin1II	CATG	1 cut(s)	251
HinfI	GANTC	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	339
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	2 cut(s)	149, 167
Hsp92II	CATG	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	9 cut(s)	17, 140, 163, 167, 177, 190, 216, 298, 324
LweI	GCATC	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	133, 315
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	2 cut(s)	278, 342
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	3 cut(s)	103, 216, 238
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	3 cut(s)	70, 82, 288
MseI	TTAA	2 cut(s)	173, 210
MslI	CAYNNNNRTG	1 cut(s)	252
MspR9I	CCNGG	2 cut(s)	155, 178
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	2 cut(s)	155, 178
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	1 cut(s)	315
PctI	GAATGC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	153, 176
PspGI	CCWGG	2 cut(s)	153, 176
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	2 cut(s)	244, 275
PstNI	CAGNNNCTG	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	173, 210
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	2 cut(s)	244, 275
ScrFI	CCNGG	2 cut(s)	155, 178
SduI	GDGCHC	1 cut(s)	123
SetI	ASST	3 cut(s)	304, 317, 374
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	103, 216, 238
StyD4I	CCNGG	2 cut(s)	153, 176
TaaI	ACNGT	1 cut(s)	133
TasI	AATT	3 cut(s)	103, 216, 238
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	173, 210
Tru9I	TTAA	2 cut(s)	173, 210
TseFI	GTSAC	1 cut(s)	315
Tsp45I	GTSAC	1 cut(s)	315
TspDTI	ATGAA	2 cut(s)	7, 111
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	2 cut(s)	103, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.