Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011433

Physical Location & Seq

Genomic Coordinates Reverse (-)

66206092 .. 66211818

Gene Structure 5727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG416300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2421 bp

ATGGCTTCAACTGACCACCCCTCTGGAACTGAAATCCAAAACCCTCAATCTCCAATCAACGGTCACGATTCCCCCGATCAACCGCAACCCCCGCAGGACCCGGAAACCCAGCCGCCGCAAGACGACGCCGTTTCGGGAGACAAGCGGAAGCGGGACGAGGAAGGCGGCGATAAGAAGCCGGACGCCGCCGGGCAACACCCTCTGTGGAAGACCAGCCTCTGCTCCTTCTTCCGCCGCCAGGACGCGTCCTGTAGCCACGGCAGCGGGTGCCGCTTTGCCCACAGCGAAGCGGAGCTCCGGCCCCGACCCGATAACACTTGGGACCCGACCTCGGAGCGGGTCAAGAAGGCGGCGAAGAAGTCGGGGGAGGAGGAGGAATGCGCGGGCATTGATGAGGTCATGATGACGGAGGCGTTGGATTATGATGAGGACGGTGAGGGAGAAGGCGGGGATGGGCTCGGGTCGGACCTTGCTCTGAGTAAATGCCTGGTCCATTTGCCCAGGAACTGGAAGTCCGATAAATTGAAGGACTTCCTTAGTGACCAGGGTATTCAATATAAATCGGCGAAGAAGAAGAAAGGCATGGCACTGGGTTTTATGAGTTTTGAAAGTGCAGAACAACTAGAAACGGCGGTCAAGGCATTGGATGGAATATCAATTGGAAACAACAATGTAAAGGTAGCAGATGTTCTTCCCCGATCATTTGAAAAGAAAACTAAATCAGCATTAGGTTTACCATTGATTGGGGAGAATGCAGAAGACTCTTTGGTGGCAAATGGGGTTGAGGATGGTGATGCGACGAAGGGACGAAGTGCCCGTGCTGTAGTGACTCCCCTTGCTCATTTGCCTTATACTGATCAGTTGGAGCAAAAAAAGAGCTCTGTTATGCAGATTCTCAAAAAACTTGTTAGTGGCGCTTTTTTGTGTTCTCTGTTGCAATGTTGCTATTCTTACTACCGTCTTGTCCTTATACATATACGCATTGGAAGCCGACTTCTGAACTGTTGCAACTTTTATTTTCAGACCAAAAGTGGTCGCAAAGCTTGTCCTAATGGTGTTCCACTTCCAGAATGGATTTTAAAGTCTAGGGAAATAGGTGGTCTTCCCTGCATTTTAGAGGGTATACTAGCATCCCCAGTTGTACATGGATATCGTAACAAGTGCGAGTTTTCGGTTGGGCATTCTCTACAGGGCAAAGTAACTGTGGGGTTTACGCTTGGAAACTTCAGGGAGGGTGTTACCGCAATTGAAGAACCTTTAGACTGCCCAAATGTATCTCCAATTTCTTGCAAATATGCTTCTATCTTTCAGGAATTTTTGCAACAATCAAGTTTACCAGTTTGGAGCAGATTTAAGAATACTGGTTTCTGGCGTCAATTGACGGTTCGAGAAGGGAGATCAGGCATGGTCTCTGATGCTGAAAATTGTGAGCCAAACATTTCAGAGGTCATGCTTATGGTTCAGGTTTCAACTGCGGGATTTGATGATTCACTTATAACCACCGAGTTTGAGAGGCTAGCACAAGCTTTTTCTGCAGGTGCCACTGCAAATTCTCCATCTTTACCTCTAACAGTTTTAGTAATTCAGGATCACCAAGGAATATCAAACGTAGCACCAGTTGATGCTCCATTACGCTCATTATGTATTTCTAAAGCCGAGAATGGTTCTGAAATCCAGGCCGCCAACAATGTGACAGAACCAAAAATCCATGACTATATAAACAATCTTTGCTTCTGTATATCACCGACAGCATTTTTCCAGGTTAATACCCTCGCTGCTGAGAAATTATACTCGCTCGCAGGGGATTGGGCTCAGTTGGGTCCTGAAACCTTGCTATTTGACGTATGTTGTGGGACTGGAACAATTGGGCTGACTTTAGCACATCGTGTTGGTATGGTTGTTGGCATTGAAATGAATGCTTCTGCAGTTTTAGATGCTCAGAGGAATGCTGAAATTAATGGCATAAAGAACTGTAGATTTGTGTGTTCAAAGGCAGAGAATGTGATGCGGTCTTTATTGGAAGAGTACCTTACTGCACCTGAGAAACAAGACAATGATGCCATTGAAGGTAGTGACAAAGCAATAGTTACTGATGACGAGAAAATAGTTGTCACTGATGAAGAAAAAGCAGTAGTAAAGGATGAAAAACCCAACCCTGAAGAGAGTTTAAGCCATGAGGCTGAAAATGGTAAAAGTGCATGTGAAGGTTTAGATAATAGCAAGCAGGACCTTCAGAAAAGTTGCACTTCTCAAAATAGGAAAAGTCCAGTTCAGTGTTTCAAGAATGTGGTAGCTATTGTTGATCCTCCACGCAATGGACTTCATCCCACAGTAAGTAACATTATCTCAATTCCATTTTACATATCTACGCAATTTTTCCCCCAATTGTTTTTGTCTCGCATTCATTTCGGTAAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 tRNA_U5-meth_tr zf-CCCH

Protein Analysis

806

Amino Acids

87.99

Weight (kDa)

5.3

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA_U5-meth_tr	PF05958	580 - 671	1.2e-06	tRNA (Uracil-5-)-methyltransferase
Methyltransf_31	PF13847	613 - 673	1e-09	Methyltransferase domain
Methyltransf_25	PF13649	614 - 668	1.6e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28450 AT2G28450
fragaria_vesca	FvH4_3g32530 FvH4_3g32530 FvH4_3g32530 FvH4_3g32530
malus_domestica	MD03G1116700.v1.1 MD11G1134700.v1.1
prunus_persica	Prupe.6G100600_v2.0.a1
pyrus_communis	pycom11g11180
rosa_chinensis	RchiOBHm_Chr5g0059591
rosa_laevigata	RLG00000035305
rosa_multiflora	Rmu_sc0016795.1_g000001
rosa_roxburghii	Rroxscaffold_1G00021020 Rroxscaffold_1G00047200
rosa_rugosa	Rorug05G0323400
rosa_samantha	Rh5AG388100 Rh5BG400100 Rh5CG424400 Rh5DG416300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1496
AarI	CACCTGC	1 cut(s)	1526
Acc36I	ACCTGC	1 cut(s)	1526
AccB1I	GGYRCC	2 cut(s)	267, 1538
AccB7I	CCANNNNNTGG	3 cut(s)	507, 743, 2315
AccBSI	CCGCTC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	1123
AccII	CGCG	2 cut(s)	245, 383
AclWI	GGATC	2 cut(s)	1596, 2297
AcsI	RAATTY	2 cut(s)	1313, 1549
AcuI	CTGAAG	3 cut(s)	1210, 2178, 2216
AcyI	GRCGYC	3 cut(s)	126, 183, 1372
AdeI	CACNNNGTG	1 cut(s)	1886
AfaI	GTAC	2 cut(s)	1143, 2027
AfiI	CCNNNNNNNGG	7 cut(s)	59, 238, 331, 336, 507, 743, 2315
AflIII	ACRYGT	1 cut(s)	243
AjnI	CCWGG	6 cut(s)	237, 486, 500, 543, 1674, 1758
AloI	GAACNNNNNNTCC	4 cut(s)	497, 529, 1689, 1721
AluBI	AGCT	5 cut(s)	295, 879, 1043, 1526, 2294
AluI	AGCT	5 cut(s)	295, 879, 1043, 1526, 2294
Alw21I	GWGCWC	2 cut(s)	297, 881
Alw26I	GTCTC	3 cut(s)	132, 1414, 2400
AlwI	GGATC	2 cut(s)	1596, 2297
AlwNI	CAGNNNCTG	2 cut(s)	219, 507
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	2 cut(s)	299, 1677
ApeKI	GCWGC	2 cut(s)	261, 1775
ApoI	RAATTY	2 cut(s)	1313, 1549
AseI	ATTAAT	1 cut(s)	1956
Asp700I	GAANNNNTTC	1 cut(s)	530
AspLEI	GCGC	2 cut(s)	383, 917
AspS9I	GGNCC	7 cut(s)	97, 300, 322, 466, 490, 1820, 2227
AsuC2I	CCSGG	2 cut(s)	101, 190
AsuHPI	GGTGA	4 cut(s)	446, 803, 1583, 1734
AsuNHI	GCTAGC	1 cut(s)	1516
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	6 cut(s)	97, 322, 466, 490, 1820, 2227
BaeGI	GKGCMC	1 cut(s)	817
BanI	GGYRCC	2 cut(s)	267, 1538
BanII	GRGCYC	4 cut(s)	297, 459, 881, 1813
BbsI	GAAGAC	3 cut(s)	215, 765, 1094
Bbv12I	GWGCWC	2 cut(s)	297, 881
BbvI	GCAGC	2 cut(s)	273, 1762
BccI	CCATC	4 cut(s)	446, 641, 782, 1564
BceAI	ACGGC	3 cut(s)	113, 274, 645
BcgI	CGANNNNNNTGC	1 cut(s)	2389
BciT130I	CCWGG	6 cut(s)	239, 488, 502, 545, 1676, 1760
BclI	TGATCA	1 cut(s)	856
BcnI	CCSGG	2 cut(s)	101, 190
BcoDI	GTCTC	3 cut(s)	132, 1414, 2400
BfaI	CTAG	4 cut(s)	623, 1086, 1127, 1517
BfmI	CTRYAG	6 cut(s)	250, 822, 1187, 1533, 1923, 1972
BfoI	RGCGCY	1 cut(s)	918
BfuAI	ACCTGC	1 cut(s)	1526
Bme1390I	CCNGG	8 cut(s)	101, 190, 239, 488, 502, 545, 1676, 1760
Bme18I	GGWCC	6 cut(s)	97, 322, 466, 490, 1820, 2227
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	7 cut(s)	97, 300, 322, 466, 490, 1820, 2227
BmiI	GGNNCC	7 cut(s)	99, 269, 302, 323, 324, 1540, 1821
BmrFI	CCNGG	8 cut(s)	101, 190, 239, 488, 502, 545, 1676, 1760
BmrI	ACTGGG	2 cut(s)	599, 1130
BmsI	GCATC	7 cut(s)	784, 1139, 1405, 1612, 1924, 1995, 2047
BmtI	GCTAGC	1 cut(s)	1520
BmuI	ACTGGG	2 cut(s)	599, 1130
BpiI	GAAGAC	3 cut(s)	215, 765, 1094
BpuMI	CCSGG	2 cut(s)	101, 190
BsaHI	GRCGYC	3 cut(s)	126, 183, 1372
BsaI	GGTCTC	1 cut(s)	1414
BsaJI	CCNNGG	5 cut(s)	256, 330, 500, 544, 1594
Bsc4I	CCNNNNNNNGG	7 cut(s)	59, 238, 331, 336, 507, 743, 2315
Bse1I	ACTGG	8 cut(s)	512, 594, 1136, 1337, 1366, 1616, 1861, 2267
Bse3DI	GCAATG	2 cut(s)	944, 2320
BseBI	CCWGG	6 cut(s)	239, 488, 502, 545, 1676, 1760
BseDI	CCNNGG	5 cut(s)	256, 330, 500, 544, 1594
BseGI	GGATG	6 cut(s)	457, 652, 793, 1130, 2146, 2323
BseLI	CCNNNNNNNGG	7 cut(s)	59, 238, 331, 336, 507, 743, 2315
BseMI	GCAATG	2 cut(s)	944, 2320
BseMII	CTCAG	5 cut(s)	467, 1770, 1826, 1952, 2031
BseNI	ACTGG	8 cut(s)	512, 594, 1136, 1337, 1366, 1616, 1861, 2267
BseRI	GAGGAG	2 cut(s)	383, 386
BseSI	GKGCMC	1 cut(s)	817
BseXI	GCAGC	2 cut(s)	273, 1762
BseYI	CCCAGC	1 cut(s)	108
BsgI	GTGCAG	2 cut(s)	633, 2019
Bsh1236I	CGCG	2 cut(s)	245, 383
BshFI	GGCC	2 cut(s)	301, 1679
BshNI	GGYRCC	2 cut(s)	267, 1538
BsiHKAI	GWGCWC	2 cut(s)	297, 881
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	4 cut(s)	101, 179, 189, 298
BslFI	GGGAC	4 cut(s)	167, 335, 819, 1867
BslI	CCNNNNNNNGG	7 cut(s)	59, 238, 331, 336, 507, 743, 2315
BsmAI	GTCTC	3 cut(s)	132, 1414, 2400
BsmFI	GGGAC	4 cut(s)	167, 335, 819, 1867
BsmI	GAATGC	6 cut(s)	383, 757, 1180, 1921, 1951, 2400
BsnI	GGCC	2 cut(s)	301, 1679
Bso31I	GGTCTC	1 cut(s)	1414
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	5 cut(s)	297, 459, 817, 881, 1813
Bsp1407I	TGTACA	1 cut(s)	1141
Bsp143I	GATC	6 cut(s)	76, 698, 856, 1397, 1588, 2302
BspANI	GGCC	2 cut(s)	301, 1679
BspCNI	CTCAG	5 cut(s)	468, 1771, 1825, 1951, 2032
BspFNI	CGCG	2 cut(s)	245, 383
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	7 cut(s)	99, 269, 302, 323, 324, 1540, 1821
BspMAI	CTGCAG	2 cut(s)	1537, 1927
BspMI	ACCTGC	1 cut(s)	1526
BspOI	GCTAGC	1 cut(s)	1520
BspPI	GGATC	2 cut(s)	1596, 2297
BspT107I	GGYRCC	2 cut(s)	267, 1538
BspTNI	GGTCTC	1 cut(s)	1414
BsrBI	CCGCTC	1 cut(s)	337
BsrDI	GCAATG	2 cut(s)	944, 2320
BsrGI	TGTACA	1 cut(s)	1141
BsrI	ACTGG	8 cut(s)	512, 594, 1136, 1337, 1366, 1616, 1861, 2267
BssECI	CCNNGG	5 cut(s)	256, 330, 500, 544, 1594
BssMI	GATC	6 cut(s)	76, 698, 856, 1397, 1588, 2302
BssNAI	GTATAC	1 cut(s)	1124
BssNI	GRCGYC	3 cut(s)	126, 183, 1372
BssT1I	CCWWGG	1 cut(s)	1594
Bst1107I	GTATAC	1 cut(s)	1124
Bst2UI	CCWGG	6 cut(s)	239, 488, 502, 545, 1676, 1760
Bst4CI	ACNGT	9 cut(s)	62, 434, 959, 1004, 1204, 1384, 1573, 1973, 2332
Bst6I	CTCTTC	2 cut(s)	2016, 2154
BstACI	GRCGYC	3 cut(s)	126, 183, 1372
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstAUI	TGTACA	1 cut(s)	1141
BstC8I	GCNNGC	4 cut(s)	385, 1518, 1797, 2222
BstDEI	CTNAG	6 cut(s)	476, 536, 1779, 1812, 1938, 2040
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	6 cut(s)	457, 652, 793, 1130, 2146, 2323
BstFNI	CGCG	2 cut(s)	245, 383
BstH2I	RGCGCY	1 cut(s)	918
BstHHI	GCGC	2 cut(s)	383, 917
BstKTI	GATC	6 cut(s)	79, 701, 859, 1400, 1591, 2305
BstMAI	GTCTC	3 cut(s)	132, 1414, 2400
BstMBI	GATC	6 cut(s)	76, 698, 856, 1397, 1588, 2302
BstMWI	GCNNNNNNNGC	7 cut(s)	91, 261, 267, 270, 638, 987, 1532
BstNI	CCWGG	6 cut(s)	239, 488, 502, 545, 1676, 1760
BstNSI	RCATGY	1 cut(s)	2202
BstSCI	CCNGG	8 cut(s)	99, 188, 237, 486, 500, 543, 1674, 1758
BstSFI	CTRYAG	6 cut(s)	250, 822, 1187, 1533, 1923, 1972
BstSLI	GKGCMC	1 cut(s)	817
BstUI	CGCG	2 cut(s)	245, 383
BstV1I	GCAGC	2 cut(s)	273, 1762
BstV2I	GAAGAC	3 cut(s)	215, 765, 1094
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstZ17I	GTATAC	1 cut(s)	1124
BsuRI	GGCC	2 cut(s)	301, 1679
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	6 cut(s)	457, 652, 793, 1130, 2146, 2323
BtsI	GCAGTG	1 cut(s)	1542
BtsIMutI	CAGTG	4 cut(s)	587, 1542, 2112, 2279
BveI	ACCTGC	1 cut(s)	1526
Cac8I	GCNNGC	4 cut(s)	385, 1518, 1797, 2222
CaiI	CAGNNNCTG	2 cut(s)	219, 507
CciI	TCATGA	1 cut(s)	399
CfoI	GCGC	2 cut(s)	383, 917
Cfr13I	GGNCC	7 cut(s)	97, 300, 322, 466, 490, 1820, 2227
CseI	GACGC	5 cut(s)	134, 191, 234, 251, 1361
Csp6I	GTAC	2 cut(s)	1142, 2026
CspCI	CAANNNNNGTGG	2 cut(s)	1489, 1524
CviAII	CATG	8 cut(s)	400, 583, 1145, 1405, 1450, 1709, 2174, 2199
CviQI	GTAC	2 cut(s)	1142, 2026
DdeI	CTNAG	6 cut(s)	476, 536, 1779, 1812, 1938, 2040
DpnI	GATC	6 cut(s)	78, 700, 858, 1399, 1590, 2304
DpnII	GATC	6 cut(s)	76, 698, 856, 1397, 1588, 2302
DraI	TTTAAA	1 cut(s)	1080
DraIII	CACNNNGTG	1 cut(s)	1886
Eam1104I	CTCTTC	2 cut(s)	2016, 2154
EarI	CTCTTC	2 cut(s)	2016, 2154
EciI	GGCGGA	1 cut(s)	221
Ecl136II	GAGCTC	2 cut(s)	295, 879
Eco130I	CCWWGG	1 cut(s)	1594
Eco24I	GRGCYC	4 cut(s)	297, 459, 881, 1813
Eco31I	GGTCTC	1 cut(s)	1414
Eco32I	GATATC	1 cut(s)	1151
Eco47I	GGWCC	6 cut(s)	97, 322, 466, 490, 1820, 2227
Eco53kI	GAGCTC	2 cut(s)	295, 879
Eco57I	CTGAAG	3 cut(s)	1210, 2178, 2216
Eco88I	CYCGRG	1 cut(s)	458
EcoICRI	GAGCTC	2 cut(s)	295, 879
EcoO109I	RGGNCCY	4 cut(s)	97, 322, 1820, 2227
EcoRII	CCWGG	6 cut(s)	237, 486, 500, 543, 1674, 1758
EcoRV	GATATC	1 cut(s)	1151
EcoT14I	CCWWGG	1 cut(s)	1594
EcoT38I	GRGCYC	4 cut(s)	297, 459, 881, 1813
ErhI	CCWWGG	1 cut(s)	1594
FaeI	CATG	8 cut(s)	403, 586, 1148, 1408, 1453, 1712, 2177, 2202
FalI	AAGNNNNNCTT	4 cut(s)	2013, 2045, 2230, 2262
FaqI	GGGAC	4 cut(s)	167, 335, 819, 1867
FatI	CATG	8 cut(s)	399, 582, 1144, 1404, 1449, 1708, 2173, 2198
FauI	CCCGC	7 cut(s)	99, 144, 257, 330, 376, 440, 1468
FbaI	TGATCA	1 cut(s)	856
FblI	GTMKAC	1 cut(s)	1123
FokI	GGATG	6 cut(s)	464, 659, 800, 1117, 2153, 2310
FriOI	GRGCYC	4 cut(s)	297, 459, 881, 1813
FspBI	CTAG	4 cut(s)	623, 1086, 1127, 1517
GlaI	GCGC	2 cut(s)	382, 916
GsaI	CCCAGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	918
HaeIII	GGCC	2 cut(s)	301, 1679
HapII	CCGG	4 cut(s)	101, 179, 189, 298
HgaI	GACGC	5 cut(s)	134, 191, 234, 251, 1361
HhaI	GCGC	2 cut(s)	383, 917
Hin1I	GRCGYC	3 cut(s)	126, 183, 1372
Hin1II	CATG	8 cut(s)	403, 586, 1148, 1408, 1453, 1712, 2177, 2202
Hin6I	GCGC	2 cut(s)	381, 915
HinP1I	GCGC	2 cut(s)	381, 915
HindIII	AAGCTT	2 cut(s)	1041, 1524
HinfI	GANTC	5 cut(s)	68, 761, 829, 892, 1487
HpaII	CCGG	4 cut(s)	101, 179, 189, 298
HphI	GGTGA	4 cut(s)	446, 803, 1583, 1734
Hpy166II	GTNNAC	4 cut(s)	734, 1124, 1212, 1334
Hpy8I	GTNNAC	4 cut(s)	734, 1124, 1212, 1334
Hpy99I	CGWCG	2 cut(s)	128, 802
HpyCH4III	ACNGT	9 cut(s)	62, 434, 959, 1004, 1204, 1384, 1573, 1973, 2332
HpyCH4IV	ACGT	2 cut(s)	1608, 1842
HpyF10VI	GCNNNNNNNGC	7 cut(s)	91, 261, 267, 270, 638, 987, 1532
HpyF3I	CTNAG	6 cut(s)	476, 536, 1779, 1812, 1938, 2040
HpySE526I	ACGT	2 cut(s)	1608, 1842
Hsp92I	GRCGYC	3 cut(s)	126, 183, 1372
Hsp92II	CATG	8 cut(s)	403, 586, 1148, 1408, 1453, 1712, 2177, 2202
HspAI	GCGC	2 cut(s)	381, 915
KflI	GGGWCCC	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	6 cut(s)	76, 698, 856, 1397, 1588, 2302
LmnI	GCTCC	7 cut(s)	227, 292, 300, 334, 865, 1344, 1630
Lsp1109I	GCAGC	2 cut(s)	273, 1762
LweI	GCATC	7 cut(s)	784, 1139, 1405, 1612, 1924, 1995, 2047
MaeI	CTAG	4 cut(s)	623, 1086, 1127, 1517
MaeII	ACGT	2 cut(s)	1608, 1842
MalI	GATC	6 cut(s)	78, 700, 858, 1399, 1590, 2304
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	6 cut(s)	76, 698, 856, 1397, 1588, 2302
MfeI	CAATTG	5 cut(s)	657, 1245, 1376, 1863, 2384
MhlI	GDGCHC	5 cut(s)	297, 459, 817, 881, 1813
MluI	ACGCGT	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	755, 823
MmeI	TCCRAC	3 cut(s)	396, 444, 843
MroXI	GAANNNNTTC	1 cut(s)	530
MseI	TTAA	5 cut(s)	1079, 1353, 1764, 1956, 2168
MslI	CAYNNNNRTG	2 cut(s)	1454, 1910
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	4 cut(s)	101, 179, 189, 298
MspR9I	CCNGG	8 cut(s)	101, 190, 239, 488, 502, 545, 1676, 1760
MunI	CAATTG	5 cut(s)	657, 1245, 1376, 1863, 2384
Mva1269I	GAATGC	6 cut(s)	383, 757, 1180, 1921, 1951, 2400
MvaI	CCWGG	6 cut(s)	239, 488, 502, 545, 1676, 1760
MvnI	CGCG	2 cut(s)	245, 383
MwoI	GCNNNNNNNGC	7 cut(s)	91, 261, 267, 270, 638, 987, 1532
NciI	CCSGG	2 cut(s)	101, 190
NdeII	GATC	6 cut(s)	76, 698, 856, 1397, 1588, 2302
NheI	GCTAGC	1 cut(s)	1516
NlaIII	CATG	8 cut(s)	403, 586, 1148, 1408, 1453, 1712, 2177, 2202
NlaIV	GGNNCC	7 cut(s)	99, 269, 302, 323, 324, 1540, 1821
NmeAIII	GCCGAG	1 cut(s)	1681
NmuCI	GTSAC	6 cut(s)	62, 539, 826, 1690, 2072, 2110
NspI	RCATGY	1 cut(s)	2202
PagI	TCATGA	1 cut(s)	399
PaqCI	CACCTGC	1 cut(s)	1526
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 814
PctI	GAATGC	6 cut(s)	383, 757, 1180, 1921, 1951, 2400
PdmI	GAANNNNTTC	1 cut(s)	530
PfeI	GAWTC	3 cut(s)	68, 892, 1487
PflMI	CCANNNNNTGG	3 cut(s)	507, 743, 2315
PleI	GAGTC	2 cut(s)	755, 823
PpsI	GAGTC	2 cut(s)	755, 823
PpuMI	RGGWCCY	4 cut(s)	97, 322, 1820, 2227
PshBI	ATTAAT	1 cut(s)	1956
PsiI	TTATAA	1 cut(s)	1496
Psp124BI	GAGCTC	2 cut(s)	297, 881
Psp5II	RGGWCCY	4 cut(s)	97, 322, 1820, 2227
Psp6I	CCWGG	6 cut(s)	237, 486, 500, 543, 1674, 1758
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	6 cut(s)	237, 486, 500, 543, 1674, 1758
PspN4I	GGNNCC	7 cut(s)	99, 269, 302, 323, 324, 1540, 1821
PspPI	GGNCC	7 cut(s)	97, 300, 322, 466, 490, 1820, 2227
PspPPI	RGGWCCY	4 cut(s)	97, 322, 1820, 2227
PsrI	GAACNNNNNNTAC	2 cut(s)	672, 704
PstI	CTGCAG	2 cut(s)	1537, 1927
PstNI	CAGNNNCTG	2 cut(s)	219, 507
RsaI	GTAC	2 cut(s)	1143, 2027
RsaNI	GTAC	2 cut(s)	1142, 2026
RseI	CAYNNNNRTG	2 cut(s)	1454, 1910
SacI	GAGCTC	2 cut(s)	297, 881
SaqAI	TTAA	5 cut(s)	1079, 1353, 1764, 1956, 2168
Sau3AI	GATC	6 cut(s)	76, 698, 856, 1397, 1588, 2302
Sau96I	GGNCC	7 cut(s)	97, 300, 322, 466, 490, 1820, 2227
SchI	GAGTC	2 cut(s)	755, 823
ScrFI	CCNGG	8 cut(s)	101, 190, 239, 488, 502, 545, 1676, 1760
SduI	GDGCHC	5 cut(s)	297, 459, 817, 881, 1813
SfaNI	GCATC	7 cut(s)	784, 1139, 1405, 1612, 1924, 1995, 2047
SfcI	CTRYAG	6 cut(s)	250, 822, 1187, 1533, 1923, 1972
SinI	GGWCC	6 cut(s)	97, 322, 466, 490, 1820, 2227
SmiMI	CAYNNNNRTG	2 cut(s)	1454, 1910
SspMI	CTAG	4 cut(s)	623, 1086, 1127, 1517
SstI	GAGCTC	2 cut(s)	297, 881
StyD4I	CCNGG	8 cut(s)	99, 188, 237, 486, 500, 543, 1674, 1758
StyI	CCWWGG	1 cut(s)	1594
TaaI	ACNGT	9 cut(s)	62, 434, 959, 1004, 1204, 1384, 1573, 1973, 2332
TaiI	ACGT	2 cut(s)	1611, 1845
TaqI	TCGA	1 cut(s)	1387
TatI	WGTACW	1 cut(s)	1141
TauI	GCSGC	8 cut(s)	115, 118, 168, 188, 237, 273, 353, 1682
TfiI	GAWTC	3 cut(s)	68, 892, 1487
Tru1I	TTAA	5 cut(s)	1079, 1353, 1764, 1956, 2168
Tru9I	TTAA	5 cut(s)	1079, 1353, 1764, 1956, 2168
TscAI	CASTG	4 cut(s)	594, 1549, 2119, 2279
TseFI	GTSAC	6 cut(s)	62, 539, 826, 1690, 2072, 2110
TseI	GCWGC	2 cut(s)	261, 1775
Tsp45I	GTSAC	6 cut(s)	62, 539, 826, 1690, 2072, 2110
TspDTI	ATGAA	5 cut(s)	1928, 2133, 2157, 2312, 2393
TspGWI	ACGGA	1 cut(s)	422
TspRI	CASTG	4 cut(s)	594, 1549, 2119, 2279
Van91I	CCANNNNNTGG	3 cut(s)	507, 743, 2315
VpaK11BI	GGWCC	6 cut(s)	97, 322, 466, 490, 1820, 2227
VspI	ATTAAT	1 cut(s)	1956
XapI	RAATTY	2 cut(s)	1313, 1549
XceI	RCATGY	1 cut(s)	2202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1068
XmiI	GTMKAC	1 cut(s)	1123
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	4 cut(s)	623, 1086, 1127, 1517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.