Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010084

Physical Location & Seq

Genomic Coordinates Reverse (-)

57610895 .. 57615965

Gene Structure 5071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG389300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2442 bp

ATGGTGGCATGTTGCCTCATGTGCCAGGTGGCCATCGCCGTCGATATGAGCCGCTGTGCCGCTTCACCTCCCAATCTGTGCCCCCTCCAGTTCTCAGGTAGCCCCGCCAAGCTATTCGGATTCGGGTTCGACATTCAGAAGAAGGACCGGCTCAAGAGGCGGCTCAAGTTCGTCGTCAGTGCGGAGCTGTCCAAGCCATTCTCTCTCAGCTTCGGCTTGGACTCTCAGGGCTATCAGCTTCATGATCCGTCGCAGTCGCGGAGGATTGGCCCTGTTCCTGGGGATATTGCAGAAATTGAAGCCTATTGTAGAATTTTTCGAAGTGCTGAACGACTACATACTGCATTGATGGAGACATTGTGCAATCCGGTGACCGGCGTGTGCAGTGTTTATTATGACTTCCCATCGGAGGAAAAGCCGCTCTTGGAGGATAAGATTGTGTCTGTGATTGGTTGCATGATGTCACTGTTGAACAAAGCAAGGGAGGATGTGCTTTCGGGAAGATCAGCCATTATGAGCTCCTTTCGAGGAGTTGTGGATGTCGCTGAGGTGGAGGAGGACATGCTTCCTCCACTTGCTGTTTTCAGGAGTGAGCTGAAGAGGTGTTGCGAGAGCTTGCACGTTGCGCTTGAGGACTGGTTGATGCCTGGGGATGACCAGAGCTTGGATGTGTGGAGGAAACTTCAGAGGCTGAAGAATGTGTGTTATGATTCCGGTTTTCCTCGCGAGGAGGATACTCCGTGCAATACGCTTTTTGCTAATTGGACTCCTGTTTACTTATCCTCTTCTAAAGAGGATGTTAGGTCCGAAGATTCAGAGGTAGCGTTTTGGAGGGGTGGCCAGGTAACAGAAGAAGGTCTGGAGTGGTTACTGGAGAAGGGATTTAAAACTCTTGTTGATCTTAGGGCAGAGATTGTAAAAGACAATATTTATCAGGCAGCCGTAGATGATGCTATTGCATCAGGGAAGGTGGAATTGATCAGAATTCCAGTTGAAGTTGGGACTGCACCTTCAATGGAGCAGGTTGAGAAATTCGCAAGTTTGGTTTCAGATTGCAGCAAAAAGCCAATCTATCTTCATAGCAAGGAAGGTCTCTGGAGAACATCTGCCATGGTTTCCAGATGGAGGCAGCACTTGACTCGCCGTGCTGTTCAGTTTGTCTCCAAGCAGTCGGTTTCTCTTAATGGAGAAGTTGAAAAACCCTCAACTATGCAGAAAAGTTCCCTCCTCGAAAAGAAGAATGAGTCACTGGACACAATTCATGGTTCAAATGGGGTGCTACAAAAAAATGATTCTGTAGACAGGGATGAAGCAAATCTAAATGGGACCTGCAATGGCCTTATATCTATCCAAGGTTTGACATCAGTTGAATCAGATGAAAGTGGGGAAAAACCTTTGGTGAACTTCTGCAGGGAAGTTGACCCCCTGAATGCTCAGGTTCCTCCTTGTAATATTTTCTCAAGAAAAGAAATGTCCAGGTTTCTTGAGAGAAAAAATATTGCACCACTCACTTATTTTAATTATCAGTTAAATAGGTTGAAGGTATTACCAATTTCCAGATATATGAATACTAAGATAATGTGGAGAGGTGAGATTGTTGATACTGATTCAGTGCGGGAGGTTGTGGAGGCAGAAAATTCCAATGGGATACCTGATGCAGAACATCTGCTTCCAGAGTTCCAGATCTCTGCTTCTGGCAATGGGAAGTATTTGACCGGTGTTGGTAATGGTTCTGTAACTGCAGTCGTAAATGGATTTGGTGAAGGGGAGAAAGGTTCCTTGTTAGCCACTAATTTATCTACTAACGCGAGCAACAATCATTCTGAGAGTGTCTTATCTAAAGCAGTGAAGGAGGAAAGGAAGAGTAATGGTAGAGCCCCTTTAGTTTCAAGTGATGATGAATTGGGATCAATTGAAGGAGATATGTGTGCTTCTGCAACTGGGGTTGTAAGGGTGCAGTCAAGAAAGAAAGCAGAGATGTTTTTAGTACGAACAGACGGATTCTCTTGTACCCGAGAAAAAGTGACAGAATCCTCCCTGGCCTTCACTCATCCAAGTACTCAGCAACAAATGCTTATGTGGAAATCTACACCAAAGACAGTATTAGTGTTAAAGAAGCTTGGGCATGAGCTTATGGAACAAGCTAAAGAGGTTGTCTCCTTCATGTATTACCAAGAGAAAATGAATGTTCTGGTGGAACCTGACGTGCATGATGTATTTGCTAGAATCCCAGGTTTTGGATTTGTTCAGACCTTCTACACCCAAGATACCGGTGATCTGCATGAGAGGGTTGATTTTGTGGCATGTCTGGGAGGGGATGGGGTAATACTCCATGCTTCAAATCTATTCAAAGGTGCTGTGCCCCCCATCGTATCATTTAATCTTGGATCTCTTGGATTTTTGACTTCCCATACTGTAAGCTTCTTGGCCTCTATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NAD_kinase

Protein Analysis

813

Amino Acids

90.13

Weight (kDa)

5.56

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-NADK	PF22741	247 - 394	1.3e-64	DSP-PTPase phosphatase fused to NAD+ Kinase
Tc-R-P	PF22785	281 - 375	4.8e-11	Polymorphic toxin system, DSP-PTPase phosphatase
NAD_kinase	PF01513	708 - 804	6.5e-12	ATP-NAD kinase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21640 AT1G21640
fragaria_vesca	FvH4_2g27820 FvH4_2g27820
malus_domestica	MD08G1160800.v1.1
prunus_persica	Prupe.1G489900_v2.0.a1 Prupe.1G489900_v2.0.a1 Prupe.1G489900_v2.0.a1
pyrus_communis	pycom348g00070
rosa_chinensis	RchiOBHm_Chr6g0296671
rosa_laevigata	RLG00000011671
rosa_multiflora	Rmu_sc0001741.1_g000009
rosa_roxburghii	Rroxscaffold_7G00171270
rosa_rugosa	Rorug06G0264100 Rorug06G0264100
rosa_samantha	Rh6AG375900 Rh6BG384200 Rh6CG389300 Rh6DG376700
rosa_wichuraiana	Rw6G032770 Rw6G032860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1012, 1337
AccB7I	CCANNNNNTGG	2 cut(s)	664, 2237
AccBSI	CCGCTC	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	1299
AccII	CGCG	3 cut(s)	259, 726, 1808
AciI	CCGC	8 cut(s)	52, 60, 105, 160, 182, 259, 419, 1615
AclWI	GGATC	3 cut(s)	239, 1915, 2395
AcoI	YGGCCR	2 cut(s)	30, 838
AcsI	RAATTY	4 cut(s)	312, 984, 1031, 1636
AcuI	CTGAAG	3 cut(s)	617, 668, 713
AfaI	GTAC	3 cut(s)	1989, 2011, 2059
AfiI	CCNNNNNNNGG	6 cut(s)	278, 374, 409, 664, 1125, 2237
AgeI	ACCGGT	2 cut(s)	1715, 2270
AjiI	CACGTC	1 cut(s)	2206
AjnI	CCWGG	7 cut(s)	24, 277, 646, 840, 1475, 2037, 2230
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	4 cut(s)	347, 1097, 1165, 2161
AlwI	GGATC	3 cut(s)	239, 1915, 2395
AlwNI	CAGNNNCTG	1 cut(s)	691
Ama87I	CYCGRG	1 cut(s)	2013
AoxI	GGCC	6 cut(s)	30, 268, 838, 1336, 2040, 2427
ApeKI	GCWGC	3 cut(s)	938, 1056, 1129
ApoI	RAATTY	4 cut(s)	312, 984, 1031, 1636
AsiGI	ACCGGT	2 cut(s)	1715, 2270
AspLEI	GCGC	1 cut(s)	628
AspS9I	GGNCC	4 cut(s)	145, 269, 804, 1326
AsuHPI	GGTGA	6 cut(s)	57, 382, 1411, 1601, 1772, 2285
AsuII	TTCGAA	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	2013
AvaII	GGWCC	3 cut(s)	145, 804, 1326
BaeGI	GKGCMC	2 cut(s)	83, 2364
BalI	TGGCCA	2 cut(s)	32, 840
BanII	GRGCYC	2 cut(s)	521, 1879
Bbv12I	GWGCWC	1 cut(s)	521
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	3 cut(s)	950, 1068, 1141
BccI	CCATC	6 cut(s)	41, 343, 412, 1116, 2312, 2375
BceAI	ACGGC	3 cut(s)	23, 926, 1128
BcgI	CGANNNNNNTGC	2 cut(s)	1121, 1155
BciT130I	CCWGG	7 cut(s)	26, 279, 648, 842, 1477, 2039, 2232
BciVI	GTATCC	2 cut(s)	727, 1641
BclI	TGATCA	1 cut(s)	978
BcoDI	GTCTC	4 cut(s)	347, 1097, 1165, 2161
BfaI	CTAG	1 cut(s)	2223
BfmI	CTRYAG	3 cut(s)	1296, 1408, 1740
BfuAI	ACCTGC	2 cut(s)	1012, 1337
BfuI	GTATCC	2 cut(s)	727, 1641
BglII	AGATCT	1 cut(s)	1683
BisI	GCNGC	7 cut(s)	52, 60, 161, 419, 939, 1057, 1130
BlsI	GCNGC	7 cut(s)	53, 61, 162, 420, 940, 1058, 1131
BmcAI	AGTACT	1 cut(s)	2059
Bme1390I	CCNGG	7 cut(s)	26, 279, 648, 842, 1477, 2039, 2232
Bme18I	GGWCC	3 cut(s)	145, 804, 1326
BmeT110I	CYCGRG	1 cut(s)	2013
BmgBI	CACGTC	1 cut(s)	2206
BmgT120I	GGNCC	4 cut(s)	145, 269, 804, 1326
BmiI	GGNNCC	4 cut(s)	1327, 1440, 1777, 2199
BmrFI	CCNGG	7 cut(s)	26, 279, 648, 842, 1477, 2039, 2232
BmrI	ACTGGG	1 cut(s)	1950
BmsI	GCATC	4 cut(s)	633, 940, 968, 1645
BmuI	ACTGGG	1 cut(s)	1950
BplI	GAGNNNNNCTC	2 cut(s)	2141, 2173
BpmI	CTGGAG	4 cut(s)	71, 881, 893, 1117
Bpu10I	CCTNAGC	2 cut(s)	546, 1434
Bpu14I	TTCGAA	1 cut(s)	319
BpuEI	CTTGAG	5 cut(s)	137, 149, 650, 1444, 1505
BsaI	GGTCTC	1 cut(s)	1097
BsaJI	CCNNGG	6 cut(s)	278, 647, 1110, 1351, 2037, 2230
BsaWI	WCCGGW	4 cut(s)	367, 713, 1715, 2270
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	6 cut(s)	278, 374, 409, 664, 1125, 2237
Bse118I	RCCGGY	4 cut(s)	147, 374, 1715, 2270
Bse1I	ACTGG	6 cut(s)	88, 641, 876, 989, 1254, 1945
Bse3DI	GCAATG	2 cut(s)	1339, 1705
BseBI	CCWGG	7 cut(s)	26, 279, 648, 842, 1477, 2039, 2232
BseDI	CCNNGG	6 cut(s)	278, 647, 1110, 1351, 2037, 2230
BseGI	GGATG	8 cut(s)	493, 544, 658, 673, 802, 1312, 2050, 2323
BseLI	CCNNNNNNNGG	6 cut(s)	278, 374, 409, 664, 1125, 2237
BseMI	GCAATG	2 cut(s)	1339, 1705
BseMII	CTCAG	7 cut(s)	108, 220, 239, 537, 1448, 1815, 2075
BseNI	ACTGG	6 cut(s)	88, 641, 876, 989, 1254, 1945
BseRI	GAGGAG	4 cut(s)	543, 569, 743, 1217
BseSI	GKGCMC	2 cut(s)	83, 2364
BseXI	GCAGC	3 cut(s)	950, 1068, 1141
BsgI	GTGCAG	3 cut(s)	403, 990, 1976
Bsh1236I	CGCG	3 cut(s)	259, 726, 1808
BshFI	GGCC	6 cut(s)	32, 270, 840, 1338, 2042, 2429
BshTI	ACCGGT	2 cut(s)	1715, 2270
BsiHKAI	GWGCWC	1 cut(s)	521
BsiHKCI	CYCGRG	1 cut(s)	2013
BsiSI	CCGG	6 cut(s)	148, 368, 375, 714, 1716, 2271
BslFI	GGGAC	2 cut(s)	1015, 1339
BslI	CCNNNNNNNGG	6 cut(s)	278, 374, 409, 664, 1125, 2237
BsmAI	GTCTC	4 cut(s)	347, 1097, 1165, 2161
BsmFI	GGGAC	2 cut(s)	1015, 1339
BsmI	GAATGC	1 cut(s)	1435
BsnI	GGCC	6 cut(s)	32, 270, 840, 1338, 2042, 2429
Bso31I	GGTCTC	1 cut(s)	1097
BsoBI	CYCGRG	1 cut(s)	2013
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	4 cut(s)	83, 521, 1879, 2364
Bsp143I	GATC	8 cut(s)	244, 503, 898, 978, 1683, 1907, 2275, 2387
Bsp19I	CCATGG	1 cut(s)	1110
Bsp68I	TCGCGA	1 cut(s)	726
BspACI	CCGC	8 cut(s)	52, 60, 105, 160, 182, 259, 419, 1615
BspANI	GGCC	6 cut(s)	32, 270, 840, 1338, 2042, 2429
BspCNI	CTCAG	7 cut(s)	107, 219, 238, 538, 1447, 1816, 2074
BspFNI	CGCG	3 cut(s)	259, 726, 1808
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	4 cut(s)	1327, 1440, 1777, 2199
BspMAI	CTGCAG	2 cut(s)	1412, 1744
BspMI	ACCTGC	2 cut(s)	1012, 1337
BspPI	GGATC	3 cut(s)	239, 1915, 2395
BspT104I	TTCGAA	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	1097
BsrBI	CCGCTC	1 cut(s)	421
BsrDI	GCAATG	2 cut(s)	1339, 1705
BsrFI	RCCGGY	4 cut(s)	147, 374, 1715, 2270
BsrI	ACTGG	6 cut(s)	88, 641, 876, 989, 1254, 1945
BssAI	RCCGGY	4 cut(s)	147, 374, 1715, 2270
BssECI	CCNNGG	6 cut(s)	278, 647, 1110, 1351, 2037, 2230
BssMI	GATC	8 cut(s)	244, 503, 898, 978, 1683, 1907, 2275, 2387
BssT1I	CCWWGG	2 cut(s)	1110, 1351
Bst2UI	CCWGG	7 cut(s)	26, 279, 648, 842, 1477, 2039, 2232
Bst4CI	ACNGT	3 cut(s)	468, 2101, 2416
Bst6I	CTCTTC	3 cut(s)	593, 790, 1856
BstAPI	GCANNNNNTGC	1 cut(s)	2071
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	617, 1810
BstDEI	CTNAG	9 cut(s)	94, 206, 225, 546, 902, 1434, 1572, 1824, 2061
BstDSI	CCRYGG	1 cut(s)	1110
BstEII	GGTNACC	1 cut(s)	370
BstF5I	GGATG	8 cut(s)	493, 544, 658, 673, 802, 1312, 2050, 2323
BstFNI	CGCG	3 cut(s)	259, 726, 1808
BstHHI	GCGC	1 cut(s)	628
BstKTI	GATC	8 cut(s)	247, 506, 901, 981, 1686, 1910, 2278, 2390
BstMAI	GTCTC	4 cut(s)	347, 1097, 1165, 2161
BstMBI	GATC	8 cut(s)	244, 503, 898, 978, 1683, 1907, 2275, 2387
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 157, 193, 625, 2071
BstNI	CCWGG	7 cut(s)	26, 279, 648, 842, 1477, 2039, 2232
BstNSI	RCATGY	3 cut(s)	12, 565, 2307
BstPI	GGTNACC	1 cut(s)	370
BstSCI	CCNGG	7 cut(s)	24, 277, 646, 840, 1475, 2037, 2230
BstSFI	CTRYAG	3 cut(s)	1296, 1408, 1740
BstSLI	GKGCMC	2 cut(s)	83, 2364
BstUI	CGCG	3 cut(s)	259, 726, 1808
BstV1I	GCAGC	3 cut(s)	950, 1068, 1141
BstX2I	RGATCY	2 cut(s)	1683, 2387
BstYI	RGATCY	2 cut(s)	1683, 2387
BsuI	GTATCC	2 cut(s)	727, 1641
BsuRI	GGCC	6 cut(s)	32, 270, 840, 1338, 2042, 2429
BtgI	CCRYGG	1 cut(s)	1110
BtgZI	GCGATG	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	2206
BtsCI	GGATG	8 cut(s)	493, 544, 658, 673, 802, 1312, 2050, 2323
BtsI	GCAGTG	2 cut(s)	391, 1851
BtsIMutI	CAGTG	6 cut(s)	184, 391, 464, 1247, 1617, 1851
BtuMI	TCGCGA	1 cut(s)	726
BveI	ACCTGC	2 cut(s)	1012, 1337
Cac8I	GCNNGC	2 cut(s)	617, 1810
CaiI	CAGNNNCTG	1 cut(s)	691
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	628
Cfr10I	RCCGGY	4 cut(s)	147, 374, 1715, 2270
Cfr13I	GGNCC	4 cut(s)	145, 269, 804, 1326
Csp6I	GTAC	3 cut(s)	1988, 2010, 2058
CspAI	ACCGGT	2 cut(s)	1715, 2270
CviQI	GTAC	3 cut(s)	1988, 2010, 2058
DdeI	CTNAG	9 cut(s)	94, 206, 225, 546, 902, 1434, 1572, 1824, 2061
DpnI	GATC	8 cut(s)	246, 505, 900, 980, 1685, 1909, 2277, 2389
DpnII	GATC	8 cut(s)	244, 503, 898, 978, 1683, 1907, 2275, 2387
DraI	TTTAAA	1 cut(s)	886
EaeI	YGGCCR	2 cut(s)	30, 838
Eam1104I	CTCTTC	3 cut(s)	593, 790, 1856
EarI	CTCTTC	3 cut(s)	593, 790, 1856
Ecl136II	GAGCTC	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	1110, 1351
Eco24I	GRGCYC	2 cut(s)	521, 1879
Eco31I	GGTCTC	1 cut(s)	1097
Eco47I	GGWCC	3 cut(s)	145, 804, 1326
Eco53kI	GAGCTC	1 cut(s)	519
Eco57I	CTGAAG	3 cut(s)	617, 668, 713
Eco88I	CYCGRG	1 cut(s)	2013
Eco91I	GGTNACC	1 cut(s)	370
EcoICRI	GAGCTC	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	1326
EcoO65I	GGTNACC	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	984
EcoRII	CCWGG	7 cut(s)	24, 277, 646, 840, 1475, 2037, 2230
EcoT14I	CCWWGG	2 cut(s)	1110, 1351
EcoT38I	GRGCYC	2 cut(s)	521, 1879
ErhI	CCWWGG	2 cut(s)	1110, 1351
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	2 cut(s)	1015, 1339
FauI	CCCGC	2 cut(s)	112, 1608
FbaI	TGATCA	1 cut(s)	978
FblI	GTMKAC	1 cut(s)	1299
Fnu4HI	GCNGC	7 cut(s)	52, 60, 161, 419, 939, 1057, 1130
FokI	GGATG	8 cut(s)	500, 551, 665, 680, 809, 1319, 2037, 2330
FriOI	GRGCYC	2 cut(s)	521, 1879
Fsp4HI	GCNGC	7 cut(s)	52, 60, 161, 419, 939, 1057, 1130
FspBI	CTAG	1 cut(s)	2223
GlaI	GCGC	1 cut(s)	627
GluI	GCNGC	7 cut(s)	52, 60, 161, 419, 939, 1057, 1130
GsuI	CTGGAG	4 cut(s)	71, 881, 893, 1117
HaeIII	GGCC	6 cut(s)	32, 270, 840, 1338, 2042, 2429
HapII	CCGG	6 cut(s)	148, 368, 375, 714, 1716, 2271
HhaI	GCGC	1 cut(s)	628
Hin6I	GCGC	1 cut(s)	626
HinP1I	GCGC	1 cut(s)	626
HincII	GTYRAC	1 cut(s)	1420
HindII	GTYRAC	1 cut(s)	1420
HindIII	AAGCTT	2 cut(s)	2117, 2419
HpaII	CCGG	6 cut(s)	148, 368, 375, 714, 1716, 2271
HphI	GGTGA	6 cut(s)	57, 382, 1411, 1601, 1772, 2285
Hpy166II	GTNNAC	4 cut(s)	775, 1300, 1402, 1420
Hpy8I	GTNNAC	4 cut(s)	775, 1300, 1402, 1420
Hpy99I	CGWCG	3 cut(s)	44, 176, 253
HpyCH4III	ACNGT	3 cut(s)	468, 2101, 2416
HpyCH4IV	ACGT	2 cut(s)	621, 2205
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 157, 193, 625, 2071
HpyF3I	CTNAG	9 cut(s)	94, 206, 225, 546, 902, 1434, 1572, 1824, 2061
HpySE526I	ACGT	2 cut(s)	621, 2205
HspAI	GCGC	1 cut(s)	626
Ksp22I	TGATCA	1 cut(s)	978
Kzo9I	GATC	8 cut(s)	244, 503, 898, 978, 1683, 1907, 2275, 2387
LmnI	GCTCC	3 cut(s)	184, 524, 1018
Lsp1109I	GCAGC	3 cut(s)	950, 1068, 1141
LweI	GCATC	4 cut(s)	633, 940, 968, 1645
MaeI	CTAG	1 cut(s)	2223
MaeII	ACGT	2 cut(s)	621, 2205
MaeIII	GTNAC	7 cut(s)	370, 462, 844, 867, 1245, 1735, 2023
MalI	GATC	8 cut(s)	246, 505, 900, 980, 1685, 1909, 2277, 2389
MbiI	CCGCTC	1 cut(s)	421
MboI	GATC	8 cut(s)	244, 503, 898, 978, 1683, 1907, 2275, 2387
MfeI	CAATTG	1 cut(s)	1911
MflI	RGATCY	2 cut(s)	1683, 2387
MhlI	GDGCHC	4 cut(s)	83, 521, 1879, 2364
MlsI	TGGCCA	2 cut(s)	32, 840
MluNI	TGGCCA	2 cut(s)	32, 840
MlyI	GAGTC	4 cut(s)	215, 760, 1132, 1253
Mox20I	TGGCCA	2 cut(s)	32, 840
MscI	TGGCCA	2 cut(s)	32, 840
MseI	TTAA	7 cut(s)	885, 1182, 1518, 1529, 2111, 2379, 2440
Msp20I	TGGCCA	2 cut(s)	32, 840
MspA1I	CMGCKG	1 cut(s)	54
MspI	CCGG	6 cut(s)	148, 368, 375, 714, 1716, 2271
MspR9I	CCNGG	7 cut(s)	26, 279, 648, 842, 1477, 2039, 2232
MunI	CAATTG	1 cut(s)	1911
Mva1269I	GAATGC	1 cut(s)	1435
MvaI	CCWGG	7 cut(s)	26, 279, 648, 842, 1477, 2039, 2232
MvnI	CGCG	3 cut(s)	259, 726, 1808
MwoI	GCNNNNNNNGC	5 cut(s)	21, 157, 193, 625, 2071
NcoI	CCATGG	1 cut(s)	1110
NdeII	GATC	8 cut(s)	244, 503, 898, 978, 1683, 1907, 2275, 2387
NlaIV	GGNNCC	4 cut(s)	1327, 1440, 1777, 2199
NmuCI	GTSAC	4 cut(s)	370, 462, 1245, 2023
NruI	TCGCGA	1 cut(s)	726
NspI	RCATGY	3 cut(s)	12, 565, 2307
NspV	TTCGAA	1 cut(s)	319
PagI	TCATGA	1 cut(s)	241
PctI	GAATGC	1 cut(s)	1435
PfeI	GAWTC	9 cut(s)	120, 710, 812, 1292, 1370, 1607, 2001, 2030, 2226
PflMI	CCANNNNNTGG	2 cut(s)	664, 2237
PinAI	ACCGGT	2 cut(s)	1715, 2270
PkrI	GCNGC	7 cut(s)	53, 61, 162, 420, 940, 1058, 1131
PleI	GAGTC	4 cut(s)	215, 760, 1132, 1252
PpsI	GAGTC	4 cut(s)	215, 760, 1132, 1252
PpuMI	RGGWCCY	1 cut(s)	1326
Psp124BI	GAGCTC	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	1326
Psp6I	CCWGG	7 cut(s)	24, 277, 646, 840, 1475, 2037, 2230
PspEI	GGTNACC	1 cut(s)	370
PspGI	CCWGG	7 cut(s)	24, 277, 646, 840, 1475, 2037, 2230
PspN4I	GGNNCC	4 cut(s)	1327, 1440, 1777, 2199
PspPI	GGNCC	4 cut(s)	145, 269, 804, 1326
PspPPI	RGGWCCY	1 cut(s)	1326
PstI	CTGCAG	2 cut(s)	1412, 1744
PstNI	CAGNNNCTG	1 cut(s)	691
PsuI	RGATCY	2 cut(s)	1683, 2387
RruI	TCGCGA	1 cut(s)	726
RsaI	GTAC	3 cut(s)	1989, 2011, 2059
RsaNI	GTAC	3 cut(s)	1988, 2010, 2058
SacI	GAGCTC	1 cut(s)	521
SaqAI	TTAA	7 cut(s)	885, 1182, 1518, 1529, 2111, 2379, 2440
SatI	GCNGC	7 cut(s)	52, 60, 161, 419, 939, 1057, 1130
Sau3AI	GATC	8 cut(s)	244, 503, 898, 978, 1683, 1907, 2275, 2387
Sau96I	GGNCC	4 cut(s)	145, 269, 804, 1326
ScaI	AGTACT	1 cut(s)	2059
SchI	GAGTC	4 cut(s)	215, 760, 1132, 1253
ScrFI	CCNGG	7 cut(s)	26, 279, 648, 842, 1477, 2039, 2232
SduI	GDGCHC	4 cut(s)	83, 521, 1879, 2364
SfaNI	GCATC	4 cut(s)	633, 940, 968, 1645
SfcI	CTRYAG	3 cut(s)	1296, 1408, 1740
SfuI	TTCGAA	1 cut(s)	319
SinI	GGWCC	3 cut(s)	145, 804, 1326
SmlI	CTYRAG	5 cut(s)	152, 164, 629, 1459, 1484
SmoI	CTYRAG	5 cut(s)	152, 164, 629, 1459, 1484
SsiI	CCGC	8 cut(s)	52, 60, 105, 160, 182, 259, 419, 1615
SspI	AATATT	3 cut(s)	928, 1453, 1498
SspMI	CTAG	1 cut(s)	2223
SstI	GAGCTC	1 cut(s)	521
StyD4I	CCNGG	7 cut(s)	24, 277, 646, 840, 1475, 2037, 2230
StyI	CCWWGG	2 cut(s)	1110, 1351
TaaI	ACNGT	3 cut(s)	468, 2101, 2416
TaiI	ACGT	2 cut(s)	624, 2208
TaqI	TCGA	5 cut(s)	42, 129, 319, 526, 1230
TatI	WGTACW	1 cut(s)	2057
TauI	GCSGC	4 cut(s)	54, 62, 163, 421
TfiI	GAWTC	9 cut(s)	120, 710, 812, 1292, 1370, 1607, 2001, 2030, 2226
Tru1I	TTAA	7 cut(s)	885, 1182, 1518, 1529, 2111, 2379, 2440
Tru9I	TTAA	7 cut(s)	885, 1182, 1518, 1529, 2111, 2379, 2440
TscAI	CASTG	6 cut(s)	184, 391, 471, 1254, 1617, 1851
TseFI	GTSAC	4 cut(s)	370, 462, 1245, 2023
TseI	GCWGC	3 cut(s)	938, 1056, 1129
Tsp45I	GTSAC	4 cut(s)	370, 462, 1245, 2023
TspDTI	ATGAA	9 cut(s)	230, 1067, 1250, 1323, 1392, 1580, 1914, 2152, 2198
TspGWI	ACGGA	3 cut(s)	237, 729, 2013
TspRI	CASTG	6 cut(s)	184, 391, 471, 1254, 1617, 1851
Van91I	CCANNNNNTGG	2 cut(s)	664, 2237
VpaK11BI	GGWCC	3 cut(s)	145, 804, 1326
XapI	RAATTY	4 cut(s)	312, 984, 1031, 1636
XceI	RCATGY	3 cut(s)	12, 565, 2307
XmiI	GTMKAC	1 cut(s)	1299
XspI	CTAG	1 cut(s)	2223
ZrmI	AGTACT	1 cut(s)	2059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.