Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005883

Physical Location & Seq

Genomic Coordinates Reverse (-)

40327214 .. 40338493

Gene Structure 11280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG225100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3177 bp

ATGGGGGCGATGAGCGTCTCCGGCCGGAAAAACCTCAGAAACTCATACCTGAAAATCGACCACGGCGCACTCCCCAGGTACCGAGACTCATACCAGCACATCCAGGGGCTCGCATCGCCACGCAAGCGAGTGGCAACGATCTTAACTAGGTCGGCGAAGGGGGATGTCAAGGTAGTCGAAGTCGCGCTCGGTGGTGGTGAGCCAATCGACGGCGTTCTCATTGCCGGCGCGGCCGTGGAAGACGAGGAGGTTCTCGAGGGCAATGAGCTTGTGGAGATGAGACTGAGCTCTCCTGCATTTATAAACCAAAACACCTCTGCGACTTCCCTCCCTCTCAAAGAACCAAGCTTTCTTCTTCTTCGTCTTCTTCCTTCACCTACCGCACCATCTCCATCTCTTCCAACTCCTGCAGATTTTGGTATGGGAAGCAAGCAGCATGACAGTGTTTTTAAAGACGATGAACCTACTACTGTAGACCATGATAATAGTTCTTTGATCCAGGTTGAGTTTTCAACTGATTCAAATGTGAATAATGAATTTAAAAAGTTGAGTGAGGTTGTCGGTGGCATAAATAATACTCCATACATATATAGACAAGATGTTGTGAGGAGCAAGAATGGTATGATTGGGGTTGTGACTGAAGTTGCTGGTGATTTGGATTCTGATAGTGGCACGTCTGATGATGAGGATGAGGATGAGGATGATATAGATGACGACGATGACGACGACCACAACAGTGAGAATCATGAAAATGACAAAGATGGTGGTGATGACAGTAATACTAATGAAAATGGTGACAAGAACCAGAATGGTGGTAATGATAAGACTGGTCCTCTTCCTGCGGACCAGGTTCGAGTGCTTTGGATAGATGAAACTGAGTCAACCCAGAATATCAATGATTTAACAGTTGTTGATCGAGGATTCTTGCATGGAGATTTTGTTGCTGCTGCTTCTGAGCCAACCGGGCAAGTTGGTGTCGTGGTGGATGTCAATATCTCTGTTGATCTGAAAGCTCCTGACGGGTCCATCATAAAAGATGTGTCATCCAATGACTTAAAACGTGTGAGGGAGTTCACTGTTGGTGATTATGTGGTCCTTGGTGCCTGGCTGGGTAGAATTGAGGATGTTTTTGATAATGTGACAGTGATGATTGATGATGGTTCCCTATGTAGAATTTTGAGAGCAGATCCGATGGATCTTAAACCACTTTCCAAAAATATGCTTGAAGATGTGCATTTCCCTTATTACCCAGGCCAGCGTGTGAAGGCAAGGTCATCATCGGTTTTCAAGAATTCTTTGTGGCTATCCGGCTCATGGAAGGCTAATCGTCTGGAAGGTACTGTTACTAAAGTTACAGTGGGATCAGTGTTTATTTATTGGATAGCTTCTGCTGGCTGTGGCCCAGATTCTTCAACTGCCCCTGCTAAAGAGCAGGTCCCCAGGAAGTTGAAATTATTGTCTTGTTTCACACATGCAAATTGGCAGTTGGGCGACTGGTGTCTCTTTCCATCATCGGGGTCGTCATCTTCCACTGCCGTAGATAAGGGTTCAAAATTAGAACTTCATCAATTAGATTCTACTCAAATGGGTAATGTTTGTGATTCGGAAGAGAGTTCACTAGAAGAACCAAATGGAAATAGTGCATCCATGGATACTGACCCAGTGTCTGTATTAGATGGAAACAATGGAAATGCTGGAAGTAATACTTCTATTGAATCTAGTTCCAGCGGTAGTTCATTGTCAGTCACAAAGGTGCCTGTTTCTCTTCATCGCAAAAAGCTGCGTAAACCTGTGGTTAAAAGAGACAAGAAGGCACGAAAGGAGGAAAATTTTGAAAGATCTTTTTTGATTGCCAATACCAGGACAACAGTTGATGTGGCATGGCAGGATGGTTCAACAGAACGGAAGCTGGCTTCAACCAATTTAATTCCTCTTGATAGTCCTGGTGATCATGAATTTGTTGCTGAACAATATGTGGTGGAGAAGGCATCTGATGATGGTGACAATGCTTTTGAAGCTAGGCGTGTTGGACTCGTGAAAAGCGTCAATGCCAAGGAGCGAACAGCTTGTGTACAGTGGTTGAAGGCAGTTTCCAGAGCTGAAGATCCTAGAGAGTTTGACAAGGAGGAAGTGGTTAGTGTATATGAGCTTGAGGGTCACCCAGATTATGATTACTGTTATGGGGATGTTGTTGTCAGATTGTTGCCAGTTTCTGTTTCTGCACAAACTGCTTCGGTATCGGACTTAATTGAGGAGCCAAAGCAGCAAAATCAACCAAGTGAGCTTACATCAGAAGTTGTTGATGAAGCTTCTTCTGTTGATAAATCTTGTATGGACTTCTCAGATCTTTCCTGGGTTGGGAATATAACTGGTCTTAAGAATGGTGATATTGAAGTTACATGGGCTGACGGGATGGTTTCTACGGTTGGACCTCAAGCAATTTATGTTGTTGGTCGAGCTGATGATGATGACTCAATTGCTGGGAGCGAGGTTAGTGATGCTGCTAGTTGGGAAACTGTTGATGATGAGGAGGTGCATGCCCTATTTCCCCTCGAGAGTATAACAGAGGAAGTGGAGATACAGAGCGACTTTAATATGAATTCTGAAGCAGAGGTAGGTGGAGAAGATAATTCTGGAAGGAACCCTGCATTGTCTGTTCCCTTGGCTGCACTTCGCTTTGTTACCAGACTGGCAAGTGGAATATTTGCTCGGGGACAAAAGAACTTGGATCCAATTTTAGATACTAAAGGTGAAGGTGATTTTGAGCCTCGGGAAGTTGAAATTTTTCAGGGAGATCATTGTGAAGATTCCTGCTCTCAGAAATCTAAAGTTGTTGATAGTAGTGTGGAGACCAATCATAAAAATGAAGAGCATGTTTCCTCGGAGACAACAAAAATATTGGATGCAGCAGAAATCTTGTGCAACTTAAGGACTGAAGGATTGGATGCTAAAGAATGTAGCAAGGGTGATGTTTGCAGTTTCAAACGCTTTGATATAGTCAAAGATCCTTTGGACCATCATTATCTTGGTGCAGCAGGGCAGGTATCTTATTTTAATTCAGTTTCAATTTCAATTTCAGTTTCAGTCCATTCGATTAATGGCATTGTAACAATCAGGGTAAGACTGCCACTTTATTCTTGGAGGATTGCTCTTTGTACATGCATAAACTTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

1058

Amino Acids

115.09

Weight (kDa)

4.54

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3-A_UBE2O	PF23048	196 - 304	6.1e-06	UBE2O, N-terminal SH3-A domain
tSH3-B_UBE2O	PF23046	360 - 491	1.6e-42	UBE2O, tandem tSH3-B domain
SH3-B_UBE2O	PF23043	650 - 722	3.3e-20	UBE2O, SH3-B domain
SH3-C_UBE2O	PF23044	781 - 823	1.5e-06	UBE2O, ubiquitin binding SH3-C domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16920 AT2G16920
fragaria_vesca	FvH4_2g15490 FvH4_2g15490 FvH4_2g15490 FvH4_2g15490 FvH4_2g15490 FvH4_2g15490 FvH4_2g15490
malus_domestica	MD05G1123200.v1.1 MD10G1126200.v1.1
prunus_persica	Prupe.8G167100_v2.0.a1 Prupe.8G167100_v2.0.a1 Prupe.8G167100_v2.0.a1
pyrus_communis	pycom05g11760 pycom10g10840
rosa_chinensis	RchiOBHm_Chr6g0278491
rosa_laevigata	RLG00000013224
rosa_multiflora	Rmu_sc0000258.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189850 Rroxscaffold_7G00190340
rosa_rugosa	Rorug06G0117200 Rorug06G0117200
rosa_samantha	Rh6AG226500 Rh6BG230700 Rh6CG233800 Rh6DG225100
rosa_wichuraiana	Rw6G019770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
Acc36I	ACCTGC	2 cut(s)	1423, 3031
Acc65I	GGTACC	1 cut(s)	78
AccB1I	GGYRCC	3 cut(s)	78, 1100, 1753
AccI	GTMKAC	1 cut(s)	474
AccII	CGCG	2 cut(s)	185, 230
AciI	CCGC	4 cut(s)	230, 381, 842, 1728
AclWI	GGATC	8 cut(s)	490, 1181, 1203, 1369, 2099, 2723, 2736, 2999
AcoI	YGGCCR	2 cut(s)	22, 231
AcsI	RAATTY	7 cut(s)	536, 1173, 1291, 1828, 1955, 2599, 2781
AcuI	CTGAAG	4 cut(s)	660, 2121, 2625, 2955
AfaI	GTAC	4 cut(s)	80, 1339, 2073, 3157
AfiI	CCNNNNNNNGG	5 cut(s)	209, 1314, 1514, 1860, 2358
AflII	CTTAAG	2 cut(s)	2375, 2926
AflIII	ACRYGT	1 cut(s)	1060
AhdI	GACNNNNNGTC	1 cut(s)	1663
AjiI	CACGTC	1 cut(s)	675
AleI	CACNNNNGTG	2 cut(s)	735, 1751
Alw21I	GWGCWC	1 cut(s)	290
Alw26I	GTCTC	7 cut(s)	22, 78, 274, 1505, 1797, 2843, 2879
AlwI	GGATC	8 cut(s)	490, 1181, 1203, 1369, 2099, 2723, 2736, 2999
AlwNI	CAGNNNCTG	2 cut(s)	1667, 2213
Ama87I	CYCGRG	4 cut(s)	254, 2552, 2709, 2769
AoxI	GGCC	4 cut(s)	22, 231, 1252, 1399
ApeKI	GCWGC	9 cut(s)	433, 944, 947, 1780, 2263, 2501, 2666, 2906, 3032
ApoI	RAATTY	7 cut(s)	536, 1173, 1291, 1828, 1955, 2599, 2781
ArsI	GACNNNNNNTTYG	2 cut(s)	1994, 2026
AseI	ATTAAT	1 cut(s)	3096
Asp700I	GAANNNNTTC	1 cut(s)	2784
Asp718I	GGTACC	1 cut(s)	78
AspLEI	GCGC	3 cut(s)	68, 187, 230
AspS9I	GGNCC	8 cut(s)	830, 844, 1023, 1093, 1400, 1435, 2429, 3013
AsuC2I	CCSGG	1 cut(s)	964
AvaI	CYCGRG	4 cut(s)	254, 2552, 2709, 2769
AvaII	GGWCC	7 cut(s)	830, 844, 1023, 1093, 1435, 2429, 3013
BamHI	GGATCC	1 cut(s)	2728
BanI	GGYRCC	3 cut(s)	78, 1100, 1753
BanII	GRGCYC	2 cut(s)	111, 290
BarI	GAAGNNNNNNTAC	2 cut(s)	2562, 2594
BauI	CACGAG	1 cut(s)	2033
BbsI	GAAGAC	2 cut(s)	246, 356
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	9 cut(s)	445, 931, 934, 1767, 2275, 2488, 2653, 2918, 3044
BceAI	ACGGC	4 cut(s)	79, 218, 226, 1520
BciVI	GTATCC	1 cut(s)	1645
BclI	TGATCA	1 cut(s)	1948
BcnI	CCSGG	1 cut(s)	964
BcoDI	GTCTC	7 cut(s)	22, 78, 274, 1505, 1797, 2843, 2879
BfaI	CTAG	6 cut(s)	147, 1619, 1719, 2019, 2109, 2505
BfmI	CTRYAG	2 cut(s)	408, 471
BfrI	CTTAAG	2 cut(s)	2375, 2926
BfuAI	ACCTGC	2 cut(s)	1423, 3031
BfuI	GTATCC	1 cut(s)	1645
BglI	GCCNNNNNGGC	2 cut(s)	230, 964
BglII	AGATCT	2 cut(s)	1838, 2344
Bme18I	GGWCC	7 cut(s)	830, 844, 1023, 1093, 1435, 2429, 3013
BmeRI	GACNNNNNGTC	1 cut(s)	1663
BmeT110I	CYCGRG	4 cut(s)	254, 2552, 2709, 2769
BmgBI	CACGTC	1 cut(s)	675
BmgT120I	GGNCC	8 cut(s)	830, 844, 1023, 1093, 1400, 1435, 2429, 3013
BmiI	GGNNCC	9 cut(s)	80, 1024, 1102, 1162, 1437, 1755, 2256, 2642, 2730
BmrI	ACTGGG	1 cut(s)	1655
BmsI	GCATC	6 cut(s)	122, 1652, 1997, 2488, 2893, 2935
BmuI	ACTGGG	1 cut(s)	1655
BoxI	GACNNNNGTC	1 cut(s)	1497
BpiI	GAAGAC	2 cut(s)	246, 356
BplI	GAGNNNNNCTC	2 cut(s)	3133, 3165
BpuEI	CTTGAG	2 cut(s)	2171, 2418
BpuMI	CCSGG	1 cut(s)	964
BsaI	GGTCTC	1 cut(s)	2843
BsaXI	ACNNNNNCTCC	2 cut(s)	924, 954
Bsc4I	CCNNNNNNNGG	5 cut(s)	209, 1314, 1514, 1860, 2358
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	6 cut(s)	832, 1499, 1661, 2207, 2374, 2694
Bse3DI	GCAATG	2 cut(s)	219, 268
BseLI	CCNNNNNNNGG	5 cut(s)	209, 1314, 1514, 1860, 2358
BseMI	GCAATG	2 cut(s)	219, 268
BseMII	CTCAG	6 cut(s)	49, 275, 867, 945, 2355, 2831
BseNI	ACTGG	6 cut(s)	832, 1499, 1661, 2207, 2374, 2694
BseRI	GAGGAG	4 cut(s)	260, 622, 2267, 2543
BseX3I	CGGCCG	2 cut(s)	22, 231
BseXI	GCAGC	9 cut(s)	445, 931, 934, 1767, 2275, 2488, 2653, 2918, 3044
BseYI	CCCAGC	2 cut(s)	1108, 2480
BsgI	GTGCAG	3 cut(s)	2205, 2652, 3051
Bsh1236I	CGCG	2 cut(s)	185, 230
Bsh1285I	CGRYCG	2 cut(s)	25, 234
BshFI	GGCC	4 cut(s)	24, 233, 1254, 1401
BshNI	GGYRCC	3 cut(s)	78, 1100, 1753
BsiEI	CGRYCG	2 cut(s)	25, 234
BsiHKAI	GWGCWC	1 cut(s)	290
BsiHKCI	CYCGRG	4 cut(s)	254, 2552, 2709, 2769
BsiSI	CCGG	5 cut(s)	21, 25, 225, 963, 1308
BslFI	GGGAC	2 cut(s)	1421, 2727
BslI	CCNNNNNNNGG	5 cut(s)	209, 1314, 1514, 1860, 2358
BsmAI	GTCTC	7 cut(s)	22, 78, 274, 1505, 1797, 2843, 2879
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	2 cut(s)	1421, 2727
BsnI	GGCC	4 cut(s)	24, 233, 1254, 1401
Bso31I	GGTCTC	1 cut(s)	2843
BsoBI	CYCGRG	4 cut(s)	254, 2552, 2709, 2769
Bsp1286I	GDGCHC	2 cut(s)	111, 290
Bsp1407I	TGTACA	2 cut(s)	2071, 3155
Bsp19I	CCATGG	1 cut(s)	1647
BspACI	CCGC	4 cut(s)	230, 381, 842, 1728
BspANI	GGCC	4 cut(s)	24, 233, 1254, 1401
BspCNI	CTCAG	6 cut(s)	48, 276, 868, 946, 2354, 2830
BspFNI	CGCG	2 cut(s)	185, 230
BspHI	TCATGA	2 cut(s)	745, 1951
BspLI	GGNNCC	9 cut(s)	80, 1024, 1102, 1162, 1437, 1755, 2256, 2642, 2730
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	2 cut(s)	1423, 3031
BspPI	GGATC	8 cut(s)	490, 1181, 1203, 1369, 2099, 2723, 2736, 2999
BspQI	GCTCTTC	1 cut(s)	2862
BspT107I	GGYRCC	3 cut(s)	78, 1100, 1753
BspTI	CTTAAG	2 cut(s)	2375, 2926
BspTNI	GGTCTC	1 cut(s)	2843
BsrDI	GCAATG	2 cut(s)	219, 268
BsrFI	RCCGGY	1 cut(s)	224
BsrGI	TGTACA	2 cut(s)	2071, 3155
BsrI	ACTGG	6 cut(s)	832, 1499, 1661, 2207, 2374, 2694
BssAI	RCCGGY	1 cut(s)	224
BssSI	CACGAG	1 cut(s)	2033
BssT1I	CCWWGG	4 cut(s)	1096, 1647, 2052, 2661
Bst2BI	CACGAG	1 cut(s)	2033
Bst6I	CTCTTC	5 cut(s)	402, 840, 1602, 1770, 2862
BstAFI	CTTAAG	2 cut(s)	2375, 2926
BstAPI	GCANNNNNTGC	1 cut(s)	2228
BstAUI	TGTACA	2 cut(s)	2071, 3155
BstC8I	GCNNGC	8 cut(s)	111, 125, 226, 431, 1256, 1393, 1911, 2538
BstDEI	CTNAG	6 cut(s)	35, 284, 876, 954, 2341, 2817
BstDSI	CCRYGG	3 cut(s)	61, 234, 1647
BstEII	GGTNACC	1 cut(s)	2156
BstFNI	CGCG	2 cut(s)	185, 230
BstHHI	GCGC	3 cut(s)	68, 187, 230
BstMAI	GTCTC	7 cut(s)	22, 78, 274, 1505, 1797, 2843, 2879
BstMCI	CGRYCG	2 cut(s)	25, 234
BstMWI	GCNNNNNNNGC	8 cut(s)	21, 115, 124, 230, 964, 2015, 2228, 2263
BstNSI	RCATGY	4 cut(s)	1475, 2540, 2876, 3162
BstPAI	GACNNNNGTC	1 cut(s)	1497
BstPI	GGTNACC	1 cut(s)	2156
BstSFI	CTRYAG	2 cut(s)	408, 471
BstUI	CGCG	2 cut(s)	185, 230
BstV1I	GCAGC	9 cut(s)	445, 931, 934, 1767, 2275, 2488, 2653, 2918, 3044
BstV2I	GAAGAC	2 cut(s)	246, 356
BstX2I	RGATCY	7 cut(s)	1186, 1195, 1838, 2104, 2344, 2728, 3004
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	7 cut(s)	1186, 1195, 1838, 2104, 2344, 2728, 3004
BstZI	CGGCCG	2 cut(s)	22, 231
BsuI	GTATCC	1 cut(s)	1645
BsuRI	GGCC	4 cut(s)	24, 233, 1254, 1401
BtgI	CCRYGG	3 cut(s)	61, 234, 1647
BtgZI	GCGATG	3 cut(s)	23, 99, 1754
BtrI	CACGTC	1 cut(s)	675
BtsI	GCAGTG	1 cut(s)	1530
BtsIMutI	CAGTG	9 cut(s)	448, 742, 1074, 1149, 1362, 1371, 1530, 1668, 2081
BveI	ACCTGC	2 cut(s)	1423, 3031
Cac8I	GCNNGC	8 cut(s)	111, 125, 226, 431, 1256, 1393, 1911, 2538
CaiI	CAGNNNCTG	2 cut(s)	1667, 2213
CciI	TCATGA	2 cut(s)	745, 1951
CfoI	GCGC	3 cut(s)	68, 187, 230
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	8 cut(s)	830, 844, 1023, 1093, 1400, 1435, 2429, 3013
CseI	GACGC	2 cut(s)	4, 2032
CsiI	ACCWGGT	1 cut(s)	846
Csp6I	GTAC	4 cut(s)	79, 1338, 2072, 3156
CspCI	CAANNNNNGTGG	2 cut(s)	745, 780
CviQI	GTAC	4 cut(s)	79, 1338, 2072, 3156
DdeI	CTNAG	6 cut(s)	35, 284, 876, 954, 2341, 2817
DraI	TTTAAA	2 cut(s)	451, 541
DriI	GACNNNNNGTC	1 cut(s)	1663
EaeI	YGGCCR	2 cut(s)	22, 231
EagI	CGGCCG	2 cut(s)	22, 231
Eam1104I	CTCTTC	5 cut(s)	402, 840, 1602, 1770, 2862
Eam1105I	GACNNNNNGTC	1 cut(s)	1663
EarI	CTCTTC	5 cut(s)	402, 840, 1602, 1770, 2862
Ecl136II	GAGCTC	1 cut(s)	288
EclXI	CGGCCG	2 cut(s)	22, 231
Eco130I	CCWWGG	4 cut(s)	1096, 1647, 2052, 2661
Eco24I	GRGCYC	2 cut(s)	111, 290
Eco31I	GGTCTC	1 cut(s)	2843
Eco47I	GGWCC	7 cut(s)	830, 844, 1023, 1093, 1435, 2429, 3013
Eco52I	CGGCCG	2 cut(s)	22, 231
Eco53kI	GAGCTC	1 cut(s)	288
Eco57I	CTGAAG	4 cut(s)	660, 2121, 2625, 2955
Eco88I	CYCGRG	4 cut(s)	254, 2552, 2709, 2769
Eco91I	GGTNACC	1 cut(s)	2156
EcoICRI	GAGCTC	1 cut(s)	288
EcoO109I	RGGNCCY	1 cut(s)	1435
EcoO65I	GGTNACC	1 cut(s)	2156
EcoRI	GAATTC	2 cut(s)	1291, 2599
EcoT14I	CCWWGG	4 cut(s)	1096, 1647, 2052, 2661
EcoT22I	ATGCAT	1 cut(s)	3164
EcoT38I	GRGCYC	2 cut(s)	111, 290
ErhI	CCWWGG	4 cut(s)	1096, 1647, 2052, 2661
Esp3I	CGTCTC	1 cut(s)	22
FalI	AAGNNNNNCTT	2 cut(s)	1690, 1722
FaqI	GGGAC	2 cut(s)	1421, 2727
FbaI	TGATCA	1 cut(s)	1948
FblI	GTMKAC	1 cut(s)	474
FriOI	GRGCYC	2 cut(s)	111, 290
FspBI	CTAG	6 cut(s)	147, 1619, 1719, 2019, 2109, 2505
GlaI	GCGC	3 cut(s)	67, 186, 229
GsaI	CCCAGC	2 cut(s)	1112, 2484
HaeIII	GGCC	4 cut(s)	24, 233, 1254, 1401
HapII	CCGG	5 cut(s)	21, 25, 225, 963, 1308
HgaI	GACGC	2 cut(s)	4, 2032
HhaI	GCGC	3 cut(s)	68, 187, 230
Hin6I	GCGC	3 cut(s)	66, 185, 228
HinP1I	GCGC	3 cut(s)	66, 185, 228
HincII	GTYRAC	1 cut(s)	882
HindII	GTYRAC	1 cut(s)	882
HindIII	AAGCTT	2 cut(s)	346, 2307
HpaII	CCGG	5 cut(s)	21, 25, 225, 963, 1308
Hpy166II	GTNNAC	6 cut(s)	475, 882, 1074, 1616, 1787, 2072
Hpy8I	GTNNAC	6 cut(s)	475, 882, 1074, 1616, 1787, 2072
Hpy99I	CGWCG	3 cut(s)	212, 719, 728
HpyCH4IV	ACGT	2 cut(s)	674, 1060
HpyF10VI	GCNNNNNNNGC	8 cut(s)	21, 115, 124, 230, 964, 2015, 2228, 2263
HpyF3I	CTNAG	6 cut(s)	35, 284, 876, 954, 2341, 2817
HpySE526I	ACGT	2 cut(s)	674, 1060
HspAI	GCGC	3 cut(s)	66, 185, 228
KpnI	GGTACC	1 cut(s)	82
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	1948
LguI	GCTCTTC	1 cut(s)	2862
LmnI	GCTCC	5 cut(s)	609, 1018, 2056, 2254, 2484
Lsp1109I	GCAGC	9 cut(s)	445, 931, 934, 1767, 2275, 2488, 2653, 2918, 3044
LweI	GCATC	6 cut(s)	122, 1652, 1997, 2488, 2893, 2935
MabI	ACCWGGT	1 cut(s)	846
MaeI	CTAG	6 cut(s)	147, 1619, 1719, 2019, 2109, 2505
MaeII	ACGT	2 cut(s)	674, 1060
MfeI	CAATTG	1 cut(s)	2475
MflI	RGATCY	7 cut(s)	1186, 1195, 1838, 2104, 2344, 2728, 3004
MhlI	GDGCHC	2 cut(s)	111, 290
MlyI	GAGTC	4 cut(s)	80, 887, 2025, 2465
MmeI	TCCRAC	3 cut(s)	425, 2008, 2407
Mph1103I	ATGCAT	1 cut(s)	3164
MroNI	GCCGGC	1 cut(s)	224
MroXI	GAANNNNTTC	1 cut(s)	2784
MslI	CAYNNNNRTG	5 cut(s)	441, 735, 750, 1751, 2862
MspA1I	CMGCKG	1 cut(s)	1728
MspCI	CTTAAG	2 cut(s)	2375, 2926
MspI	CCGG	5 cut(s)	21, 25, 225, 963, 1308
MunI	CAATTG	1 cut(s)	2475
MvnI	CGCG	2 cut(s)	185, 230
MwoI	GCNNNNNNNGC	8 cut(s)	21, 115, 124, 230, 964, 2015, 2228, 2263
NaeI	GCCGGC	1 cut(s)	226
NciI	CCSGG	1 cut(s)	964
NcoI	CCATGG	1 cut(s)	1647
NgoMIV	GCCGGC	1 cut(s)	224
NlaIV	GGNNCC	9 cut(s)	80, 1024, 1102, 1162, 1437, 1755, 2256, 2642, 2730
NmuCI	GTSAC	6 cut(s)	634, 794, 1138, 1744, 2000, 2156
NsiI	ATGCAT	1 cut(s)	3164
NspI	RCATGY	4 cut(s)	1475, 2540, 2876, 3162
OliI	CACNNNNGTG	2 cut(s)	735, 1751
PaeI	GCATGC	1 cut(s)	2540
PaeR7I	CTCGAG	2 cut(s)	254, 2552
PagI	TCATGA	2 cut(s)	745, 1951
PciSI	GCTCTTC	1 cut(s)	2862
PcsI	WCGNNNNNNNCGW	3 cut(s)	720, 723, 2040
PdiI	GCCGGC	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	2784
PfeI	GAWTC	9 cut(s)	518, 659, 742, 921, 1406, 1574, 1601, 1715, 2807
PleI	GAGTC	4 cut(s)	80, 886, 2025, 2465
PpsI	GAGTC	4 cut(s)	80, 886, 2025, 2465
PpuMI	RGGWCCY	1 cut(s)	1435
PshAI	GACNNNNGTC	1 cut(s)	1497
PshBI	ATTAAT	1 cut(s)	3096
PsiI	TTATAA	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	1435
PspEI	GGTNACC	1 cut(s)	2156
PspFI	CCCAGC	2 cut(s)	1108, 2480
PspN4I	GGNNCC	9 cut(s)	80, 1024, 1102, 1162, 1437, 1755, 2256, 2642, 2730
PspPI	GGNCC	8 cut(s)	830, 844, 1023, 1093, 1400, 1435, 2429, 3013
PspPPI	RGGWCCY	1 cut(s)	1435
PstI	CTGCAG	1 cut(s)	412
PstNI	CAGNNNCTG	2 cut(s)	1667, 2213
PsuI	RGATCY	7 cut(s)	1186, 1195, 1838, 2104, 2344, 2728, 3004
RsaI	GTAC	4 cut(s)	80, 1339, 2073, 3157
RsaNI	GTAC	4 cut(s)	79, 1338, 2072, 3156
RseI	CAYNNNNRTG	5 cut(s)	441, 735, 750, 1751, 2862
SacI	GAGCTC	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	2862
Sau96I	GGNCC	8 cut(s)	830, 844, 1023, 1093, 1400, 1435, 2429, 3013
SchI	GAGTC	4 cut(s)	80, 887, 2025, 2465
SduI	GDGCHC	2 cut(s)	111, 290
SexAI	ACCWGGT	1 cut(s)	846
SfaNI	GCATC	6 cut(s)	122, 1652, 1997, 2488, 2893, 2935
SfcI	CTRYAG	2 cut(s)	408, 471
Sfr274I	CTCGAG	2 cut(s)	254, 2552
SinI	GGWCC	7 cut(s)	830, 844, 1023, 1093, 1435, 2429, 3013
SlaI	CTCGAG	2 cut(s)	254, 2552
SmiMI	CAYNNNNRTG	5 cut(s)	441, 735, 750, 1751, 2862
SmlI	CTYRAG	6 cut(s)	254, 2150, 2375, 2433, 2552, 2926
SmoI	CTYRAG	6 cut(s)	254, 2150, 2375, 2433, 2552, 2926
SphI	GCATGC	1 cut(s)	2540
SsiI	CCGC	4 cut(s)	230, 381, 842, 1728
SspI	AATATT	2 cut(s)	2703, 2898
SspMI	CTAG	6 cut(s)	147, 1619, 1719, 2019, 2109, 2505
SstI	GAGCTC	1 cut(s)	290
StyI	CCWWGG	4 cut(s)	1096, 1647, 2052, 2661
TaiI	ACGT	2 cut(s)	677, 1063
TaqI	TCGA	9 cut(s)	57, 177, 207, 255, 853, 916, 2455, 2553, 3092
TatI	WGTACW	2 cut(s)	2071, 3155
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	9 cut(s)	518, 659, 742, 921, 1406, 1574, 1601, 1715, 2807
TscAI	CASTG	9 cut(s)	448, 742, 1081, 1149, 1362, 1371, 1537, 1668, 2081
TseFI	GTSAC	6 cut(s)	634, 794, 1138, 1744, 2000, 2156
TseI	GCWGC	9 cut(s)	433, 944, 947, 1780, 2263, 2501, 2666, 2906, 3032
Tsp45I	GTSAC	6 cut(s)	634, 794, 1138, 1744, 2000, 2156
TspGWI	ACGGA	1 cut(s)	1918
TspRI	CASTG	9 cut(s)	448, 742, 1081, 1149, 1362, 1371, 1537, 1668, 2081
Vha464I	CTTAAG	2 cut(s)	2375, 2926
VpaK11BI	GGWCC	7 cut(s)	830, 844, 1023, 1093, 1435, 2429, 3013
VspI	ATTAAT	1 cut(s)	3096
XapI	RAATTY	7 cut(s)	536, 1173, 1291, 1828, 1955, 2599, 2781
XceI	RCATGY	4 cut(s)	1475, 2540, 2876, 3162
XcmI	CCANNNNNNNNNTGG	3 cut(s)	3023, 3095, 3135
XhoI	CTCGAG	2 cut(s)	254, 2552
XmiI	GTMKAC	1 cut(s)	474
XmnI	GAANNNNTTC	1 cut(s)	2784
XspI	CTAG	6 cut(s)	147, 1619, 1719, 2019, 2109, 2505
Zsp2I	ATGCAT	1 cut(s)	3164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.