Rh7DG133600

UBA-like domain (DUF1421)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013667
Physical Location & Seq
Reverse (-)
11275355 .. 11278282
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG133600.1

Sequence Viewer

Length: 1188 bp
ATGACAATCTTCTTGACAGGCTTCTTGTTTGTAAACAAACCACAGGTTGAAGGTGGTATGCAGGATTTGAGAGATAAGCAAGAGATCTCAGAGGCTCAGCTGCAGCTTGCAAAACTTCAAATGCTTAAGGATCACCAGAAGTTGGAACAAGAAAGGAGCAATGTGCAAACAACTTCCGCGTCATCTGCTCCTCAGAAATCCCACCAATCATATTCAACTCCTGTTGCTCCTCATCAATCCCACCAATCATATTCAACTCCTGTTGCTTCTGTACAACATCCTTCCCTTCCTCCTGATATTCCCCCAACCCTGACCCATCAGAACTTTCCACCAGCACCTACAGCAGCTCAGCTTCCAGCTCAGTCATCTCAGTATCAAACTCCTTATAGCCAACAGCCAGATTCTAACTACTCGGCACCTGTGCTGAATCCACCCACAACTCAGGCATACTATATGTCTCAAGTTCAGCAGTCGCAACCACCTCCCACAGCACCATATCAACCCTATCCAGCAGTACCACATCCTTCACAAACATCACATTTTCAGAAGCAGAGTCAGCTTCACCCGCCTCTCAATGCTCCTGATCCACAAGCCCAGTATTCATTGATTCACAATCCAGCAGAAACCCCGTATGGGTTATCTCAAAGCTATCCCCAGAGCATCCACAAAACCTCTAATGCGCCTGGCATGGTTCTACCATCACAACAACAGTTTGAGGGTTCCATGCAGTATACACATGACCGATCTACTAGAAATTACAGCACAGACTTCTCCCCTGGAAATATGCAACCAGTTCAACGTTCAAGCTACGATGACTTTTATTCCCACAGCGGATCTCCTTCTCACTACAGTGATTCAAAAATGAAACAGTCGCAAGTATCACCATCCTCTTCGGTCGCTTCTGGTGGAAGCAGTTTCTCAAGACTGCCAACTGCAAAGGTATTGCCGTATGCATTACCCATGGCTGCCAGTGTGGATAAGGAGTCAGATTCTGGCGGGACTGGAAACCGCGTTCCAGTTGATAATGTCATTGATAAGGTTGTAGCTATGGGATTCCGAAGGGACATAGTCAGAGCAACAGTGAGGAAAATGACTGAGAATGGGCAGGCAGTGGACCTTAATGTTGTGCTGGATAAACTGATGAACAGTGGAGAAGTTCAGTCCCAAAGTGGTGGATTTGGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1421

Protein Analysis

395

Amino Acids

43.18

Weight (kDa)

6.7

Isoelectric Point (pI)

73.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1421 PF07223 340 - 383 3e-20 UBA-like domain (DUF1421)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013667)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05870 FvH4_5g05870
malus_domestica MD06G1169700.v1.1 MD14G1175200.v1.1
prunus_persica Prupe.5G168500_v2.0.a1
pyrus_communis pycom06g15100 pycom14g14620
rosa_chinensis RchiOBHm_Chr7g0192951
rosa_laevigata RLG00000004309
rosa_multiflora Rmu_sc0002040.1_g000061
rosa_roxburghii Rroxscaffold_3G00262510
rosa_rugosa Rorug07G0006400 Rorug07G0294800
rosa_samantha Rh7AG131600 Rh7BG132500 Rh7CG135700 Rh7DG133600
rosa_wichuraiana Rw7G011230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 415
AccB7I CCANNNNNTGG 1 cut(s) 142
AccI GTMKAC 1 cut(s) 731
AccII CGCG 2 cut(s) 179, 1011
AciI CCGC 5 cut(s) 177, 566, 831, 996, 1009
AclI AACGTT 1 cut(s) 799
AclWI GGATC 3 cut(s) 138, 578, 841
AcoI YGGCCR 1 cut(s) 1180
AfaI GTAC 2 cut(s) 273, 516
AfiI CCNNNNNNNGG 2 cut(s) 142, 633
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 7 cut(s) 50, 119, 216, 255, 797, 804, 858
AjnI CCWGG 2 cut(s) 682, 775
AleI CACNNNNGTG 1 cut(s) 849
AloI GAACNNNNNNTCC 2 cut(s) 996, 1028
AluBI AGCT 9 cut(s) 100, 106, 347, 352, 359, 559, 648, 807, 1046
AluI AGCT 9 cut(s) 100, 106, 347, 352, 359, 559, 648, 807, 1046
Alw26I GTCTC 1 cut(s) 462
AlwI GGATC 3 cut(s) 138, 578, 841
AlwNI CAGNNNCTG 1 cut(s) 992
AoxI GGCC 1 cut(s) 1180
ApeKI GCWGC 4 cut(s) 100, 103, 344, 965
AspLEI GCGC 1 cut(s) 682
AspS9I GGNCC 1 cut(s) 1114
AsuHPI GGTGA 3 cut(s) 125, 554, 873
AvaII GGWCC 1 cut(s) 1114
BalI TGGCCA 1 cut(s) 1182
BanI GGYRCC 1 cut(s) 415
BbvI GCAGC 4 cut(s) 87, 115, 356, 952
BccI CCATC 3 cut(s) 324, 706, 892
BceAI ACGGC 1 cut(s) 931
BciT130I CCWGG 2 cut(s) 684, 777
BcoDI GTCTC 1 cut(s) 462
BfaI CTAG 1 cut(s) 750
BfmI CTRYAG 3 cut(s) 101, 339, 847
BfrI CTTAAG 1 cut(s) 125
BglII AGATCT 1 cut(s) 84
BisI GCNGC 4 cut(s) 101, 104, 345, 966
BlpI GCTNAGC 2 cut(s) 96, 348
BlsI GCNGC 4 cut(s) 102, 105, 346, 967
Bme1390I CCNGG 2 cut(s) 684, 777
Bme18I GGWCC 1 cut(s) 1114
BmgT120I GGNCC 1 cut(s) 1114
BmiI GGNNCC 2 cut(s) 417, 721
BmrFI CCNGG 2 cut(s) 684, 777
BmrI ACTGGG 1 cut(s) 589
BmsI GCATC 1 cut(s) 669
BmuI ACTGGG 1 cut(s) 589
Bpu1102I GCTNAGC 2 cut(s) 96, 348
BpuEI CTTGAG 2 cut(s) 444, 904
BsaJI CCNNGG 2 cut(s) 775, 960
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 633
Bse1I ACTGG 6 cut(s) 595, 791, 969, 1006, 1016, 1183
Bse3DI GCAATG 1 cut(s) 166
BseBI CCWGG 2 cut(s) 684, 777
BseDI CCNNGG 2 cut(s) 775, 960
BseGI GGATG 4 cut(s) 277, 520, 660, 884
BseLI CCNNNNNNNGG 2 cut(s) 142, 633
BseMI GCAATG 1 cut(s) 166
BseMII CTCAG 8 cut(s) 102, 110, 206, 362, 374, 383, 455, 1086
BseNI ACTGG 6 cut(s) 595, 791, 969, 1006, 1016, 1183
BseRI GAGGAG 2 cut(s) 180, 219
BseXI GCAGC 4 cut(s) 87, 115, 356, 952
Bsh1236I CGCG 2 cut(s) 179, 1011
Bsh1285I CGRYCG 1 cut(s) 897
BshFI GGCC 1 cut(s) 1182
BshNI GGYRCC 1 cut(s) 415
BsiEI CGRYCG 1 cut(s) 897
BslFI GGGAC 3 cut(s) 1012, 1076, 1147
BslI CCNNNNNNNGG 2 cut(s) 142, 633
BsmAI GTCTC 1 cut(s) 462
BsmFI GGGAC 3 cut(s) 1012, 1076, 1147
BsnI GGCC 1 cut(s) 1182
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 5 cut(s) 84, 130, 583, 743, 833
Bsp1720I GCTNAGC 2 cut(s) 96, 348
Bsp19I CCATGG 1 cut(s) 960
BspACI CCGC 5 cut(s) 177, 566, 831, 996, 1009
BspANI GGCC 1 cut(s) 1182
BspCNI CTCAG 8 cut(s) 101, 109, 205, 361, 373, 382, 454, 1087
BspFNI CGCG 2 cut(s) 179, 1011
BspLI GGNNCC 2 cut(s) 417, 721
BspMAI CTGCAG 1 cut(s) 105
BspPI GGATC 3 cut(s) 138, 578, 841
BspT107I GGYRCC 1 cut(s) 415
BspTI CTTAAG 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 166
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 6 cut(s) 595, 791, 969, 1006, 1016, 1183
BssECI CCNNGG 2 cut(s) 775, 960
BssMI GATC 5 cut(s) 84, 130, 583, 743, 833
BssNAI GTATAC 1 cut(s) 732
BssT1I CCWWGG 1 cut(s) 960
Bst1107I GTATAC 1 cut(s) 732
Bst2UI CCWGG 2 cut(s) 684, 777
Bst4CI ACNGT 5 cut(s) 711, 851, 870, 1081, 1148
Bst6I CTCTTC 1 cut(s) 895
BstAFI CTTAAG 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 108, 1107
BstDEI CTNAG 8 cut(s) 88, 96, 192, 348, 360, 369, 441, 1095
BstDSI CCRYGG 1 cut(s) 960
BstF5I GGATG 4 cut(s) 277, 520, 660, 884
BstFNI CGCG 2 cut(s) 179, 1011
BstHHI GCGC 1 cut(s) 682
BstKTI GATC 5 cut(s) 87, 133, 586, 746, 836
BstMAI GTCTC 1 cut(s) 462
BstMBI GATC 5 cut(s) 84, 130, 583, 743, 833
BstMCI CGRYCG 1 cut(s) 897
BstMWI GCNNNNNNNGC 4 cut(s) 185, 341, 556, 565
BstNI CCWGG 2 cut(s) 684, 777
BstSCI CCNGG 2 cut(s) 682, 775
BstSFI CTRYAG 3 cut(s) 101, 339, 847
BstUI CGCG 2 cut(s) 179, 1011
BstV1I GCAGC 4 cut(s) 87, 115, 356, 952
BstX2I RGATCY 2 cut(s) 84, 833
BstXI CCANNNNNNTGG 1 cut(s) 1172
BstYI RGATCY 2 cut(s) 84, 833
BstZ17I GTATAC 1 cut(s) 732
BsuRI GGCC 1 cut(s) 1182
BtgI CCRYGG 1 cut(s) 960
BtsCI GGATG 4 cut(s) 277, 520, 660, 884
BtsI GCAGTG 1 cut(s) 1116
BtsIMutI CAGTG 5 cut(s) 856, 976, 1086, 1116, 1153
Cac8I GCNNGC 2 cut(s) 108, 1107
CaiI CAGNNNCTG 1 cut(s) 992
CfoI GCGC 1 cut(s) 682
Cfr13I GGNCC 1 cut(s) 1114
CseI GACGC 1 cut(s) 168
Csp6I GTAC 2 cut(s) 272, 515
CviAII CATG 4 cut(s) 688, 724, 737, 961
CviQI GTAC 2 cut(s) 272, 515
DdeI CTNAG 8 cut(s) 88, 96, 192, 348, 360, 369, 441, 1095
DpnI GATC 5 cut(s) 86, 132, 585, 745, 835
DpnII GATC 5 cut(s) 84, 130, 583, 743, 833
EaeI YGGCCR 1 cut(s) 1180
Eam1104I CTCTTC 1 cut(s) 895
EarI CTCTTC 1 cut(s) 895
Eco130I CCWWGG 1 cut(s) 960
Eco47I GGWCC 1 cut(s) 1114
EcoRII CCWGG 2 cut(s) 682, 775
EcoT14I CCWWGG 1 cut(s) 960
EcoT22I ATGCAT 1 cut(s) 955
ErhI CCWWGG 1 cut(s) 960
FaeI CATG 4 cut(s) 691, 727, 740, 964
FaqI GGGAC 3 cut(s) 1012, 1076, 1147
FatI CATG 4 cut(s) 687, 723, 736, 960
FauI CCCGC 2 cut(s) 573, 989
FblI GTMKAC 1 cut(s) 731
Fnu4HI GCNGC 4 cut(s) 101, 104, 345, 966
FokI GGATG 4 cut(s) 264, 507, 647, 871
Fsp4HI GCNGC 4 cut(s) 101, 104, 345, 966
FspBI CTAG 1 cut(s) 750
GlaI GCGC 1 cut(s) 681
GluI GCNGC 4 cut(s) 101, 104, 345, 966
HaeIII GGCC 1 cut(s) 1182
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 682
Hin1II CATG 4 cut(s) 691, 727, 740, 964
Hin6I GCGC 1 cut(s) 680
HinP1I GCGC 1 cut(s) 680
HinfI GANTC 8 cut(s) 401, 427, 553, 607, 854, 983, 989, 1053
HphI GGTGA 3 cut(s) 125, 554, 873
Hpy166II GTNNAC 3 cut(s) 34, 732, 1114
Hpy188I TCNGA 7 cut(s) 91, 195, 321, 546, 988, 1058, 1073
Hpy188III TCNNGA 4 cut(s) 13, 293, 581, 921
Hpy8I GTNNAC 3 cut(s) 34, 732, 1114
HpyAV CCTTC 6 cut(s) 44, 291, 296, 534, 849, 1053
HpyCH4III ACNGT 5 cut(s) 711, 851, 870, 1081, 1148
HpyCH4IV ACGT 1 cut(s) 799
HpyCH4V TGCA 8 cut(s) 61, 103, 110, 166, 727, 787, 935, 953
HpyF10VI GCNNNNNNNGC 4 cut(s) 185, 341, 556, 565
HpyF3I CTNAG 8 cut(s) 88, 96, 192, 348, 360, 369, 441, 1095
HpySE526I ACGT 1 cut(s) 799
Hsp92II CATG 4 cut(s) 691, 727, 740, 964
HspAI GCGC 1 cut(s) 680
Kzo9I GATC 5 cut(s) 84, 130, 583, 743, 833
LmnI GCTCC 4 cut(s) 156, 193, 232, 583
Lsp1109I GCAGC 4 cut(s) 87, 115, 356, 952
LweI GCATC 1 cut(s) 669
MaeI CTAG 1 cut(s) 750
MaeII ACGT 1 cut(s) 799
MalI GATC 5 cut(s) 86, 132, 585, 745, 835
MboI GATC 5 cut(s) 84, 130, 583, 743, 833
MboII GAAGA 1 cut(s) 882
MflI RGATCY 2 cut(s) 84, 833
MlsI TGGCCA 1 cut(s) 1182
MluCI AATT 1 cut(s) 754
MluNI TGGCCA 1 cut(s) 1182
MlyI GAGTC 2 cut(s) 562, 992
MmeI TCCRAC 1 cut(s) 123
Mox20I TGGCCA 1 cut(s) 1182
Mph1103I ATGCAT 1 cut(s) 955
MscI TGGCCA 1 cut(s) 1182
MseI TTAA 2 cut(s) 126, 1119
MslI CAYNNNNRTG 1 cut(s) 849
Msp20I TGGCCA 1 cut(s) 1182
MspA1I CMGCKG 2 cut(s) 100, 831
MspCI CTTAAG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 684, 777
MvaI CCWGG 2 cut(s) 684, 777
MvnI CGCG 2 cut(s) 179, 1011
MwoI GCNNNNNNNGC 4 cut(s) 185, 341, 556, 565
NcoI CCATGG 1 cut(s) 960
NdeII GATC 5 cut(s) 84, 130, 583, 743, 833
NlaIII CATG 4 cut(s) 691, 727, 740, 964
NlaIV GGNNCC 2 cut(s) 417, 721
NmeAIII GCCGAG 1 cut(s) 392
NsiI ATGCAT 1 cut(s) 955
OliI CACNNNNGTG 1 cut(s) 849
PfeI GAWTC 6 cut(s) 401, 427, 607, 854, 989, 1053
PflFI GACNNNGTC 1 cut(s) 1067
PflMI CCANNNNNTGG 1 cut(s) 142
PkrI GCNGC 4 cut(s) 102, 105, 346, 967
PleI GAGTC 2 cut(s) 561, 991
PpsI GAGTC 2 cut(s) 561, 991
Psp1406I AACGTT 1 cut(s) 799
Psp6I CCWGG 2 cut(s) 682, 775
PspGI CCWGG 2 cut(s) 682, 775
PspN4I GGNNCC 2 cut(s) 417, 721
PspPI GGNCC 1 cut(s) 1114
PstI CTGCAG 1 cut(s) 105
PstNI CAGNNNCTG 1 cut(s) 992
PsuI RGATCY 2 cut(s) 84, 833
PsyI GACNNNGTC 1 cut(s) 1067
PvuII CAGCTG 1 cut(s) 100
RsaI GTAC 2 cut(s) 273, 516
RsaNI GTAC 2 cut(s) 272, 515
RseI CAYNNNNRTG 1 cut(s) 849
SaqAI TTAA 2 cut(s) 126, 1119
SatI GCNGC 4 cut(s) 101, 104, 345, 966
Sau3AI GATC 5 cut(s) 84, 130, 583, 743, 833
Sau96I GGNCC 1 cut(s) 1114
SchI GAGTC 2 cut(s) 562, 992
ScrFI CCNGG 2 cut(s) 684, 777
SfaNI GCATC 1 cut(s) 669
SfcI CTRYAG 3 cut(s) 101, 339, 847
SinI GGWCC 1 cut(s) 1114
SmiMI CAYNNNNRTG 1 cut(s) 849
SmlI CTYRAG 3 cut(s) 125, 459, 919
SmoI CTYRAG 3 cut(s) 125, 459, 919
Sse9I AATT 1 cut(s) 754
SsiI CCGC 5 cut(s) 177, 566, 831, 996, 1009
SspMI CTAG 1 cut(s) 750
StyD4I CCNGG 2 cut(s) 682, 775
StyI CCWWGG 1 cut(s) 960
TaaI ACNGT 5 cut(s) 711, 851, 870, 1081, 1148
TaiI ACGT 1 cut(s) 802
TaqII GACCGA 2 cut(s) 756, 883
TasI AATT 1 cut(s) 754
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 6 cut(s) 401, 427, 607, 854, 989, 1053
Tru1I TTAA 2 cut(s) 126, 1119
Tru9I TTAA 2 cut(s) 126, 1119
TscAI CASTG 5 cut(s) 856, 976, 1086, 1116, 1153
TseI GCWGC 4 cut(s) 100, 103, 344, 965
TspDTI ATGAA 3 cut(s) 591, 878, 1157
TspRI CASTG 5 cut(s) 856, 976, 1086, 1116, 1153
Tth111I GACNNNGTC 1 cut(s) 1067
Van91I CCANNNNNTGG 1 cut(s) 142
Vha464I CTTAAG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 1114
XmiI GTMKAC 1 cut(s) 731
XspI CTAG 1 cut(s) 750
Zsp2I ATGCAT 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.