Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Forward (+)

143489 .. 146479

Gene Structure 2991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01370.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCGAGAACCAAGCATCGCGTTACCAGGTCACAACCTCGGAATCAAACTGATGCCGCCGGTGCTTCATCTTCTCAGGCGGCAGGTCCAACTACGACCCCGACAAGGAGAGGCGGTGAAGGTGGAGATAATACTCAACAAACAAATCCTACAACTTCACCAGCTACTGGTACAAGGAGAGGGGCTAAGAGATCCAGACAGGCTATGCCACGAGGCTCACAGAAGAAGTCTTATCGATACAGGCCAGGAACCGTTGCTCTAAAAGAGATTCGCCATTTCCAGAAGCAGACAAACCTTCTTATTCCGGCTGCCAGTTTCATAAGAGAAGTGAGAAGTATAACCCATATGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTTGCTCTTCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCATGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAACTTGCACGCCGGCTTGGAGGAAAAGGCAGACCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

178

Amino Acids

19.71

Weight (kDa)

11.58

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	82 - 171	4e-24	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	74
AccB7I	CCANNNNNTGG	2 cut(s)	167, 349
AccII	CGCG	1 cut(s)	21
AciI	CCGC	4 cut(s)	57, 80, 114, 407
AclWI	GGATC	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	3 cut(s)	105, 167, 349
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	3 cut(s)	401, 444, 497
AjiI	CACGTC	1 cut(s)	470
AjnI	CCWGG	2 cut(s)	26, 244
AluBI	AGCT	3 cut(s)	164, 380, 386
AluI	AGCT	3 cut(s)	164, 380, 386
AlwI	GGATC	1 cut(s)	186
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	242, 351
ApeKI	GCWGC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	86, 352
AsuHPI	GGTGA	2 cut(s)	128, 150
AvaII	GGWCC	1 cut(s)	86
BauI	CACGAG	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	295
BciT130I	CCWGG	2 cut(s)	28, 246
BfuAI	ACCTGC	1 cut(s)	74
BisI	GCNGC	4 cut(s)	57, 81, 309, 408
BlsI	GCNGC	4 cut(s)	58, 82, 310, 409
Bme1390I	CCNGG	2 cut(s)	28, 246
Bme18I	GGWCC	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	86, 352
BmiI	GGNNCC	2 cut(s)	250, 354
BmrFI	CCNGG	2 cut(s)	28, 246
BmsI	GCATC	2 cut(s)	25, 43
Bsa29I	ATCGAT	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	38, 530
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 167, 349
Bse118I	RCCGGY	2 cut(s)	59, 507
Bse1I	ACTGG	2 cut(s)	172, 312
BseBI	CCWGG	2 cut(s)	28, 246
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	38, 530
BseLI	CCNNNNNNNGG	3 cut(s)	105, 167, 349
BseMII	CTCAG	2 cut(s)	89, 450
BseNI	ACTGG	2 cut(s)	172, 312
BseXI	GCAGC	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	244, 353
BshVI	ATCGAT	1 cut(s)	235
BsiSI	CCGG	3 cut(s)	60, 305, 508
BslI	CCNNNNNNNGG	3 cut(s)	105, 167, 349
BsnI	GGCC	2 cut(s)	244, 353
Bsp143I	GATC	1 cut(s)	191
Bsp19I	CCATGG	1 cut(s)	530
BspACI	CCGC	4 cut(s)	57, 80, 114, 407
BspANI	GGCC	2 cut(s)	244, 353
BspCNI	CTCAG	2 cut(s)	88, 449
BspDI	ATCGAT	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	250, 354
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	402
BsrFI	RCCGGY	2 cut(s)	59, 507
BsrI	ACTGG	2 cut(s)	172, 312
BssAI	RCCGGY	2 cut(s)	59, 507
BssECI	CCNNGG	2 cut(s)	38, 530
BssMI	GATC	1 cut(s)	191
BssSI	CACGAG	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	530
Bst2BI	CACGAG	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	28, 246
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	505, 509
BstDEI	CTNAG	3 cut(s)	75, 186, 436
BstDSI	CCRYGG	1 cut(s)	530
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	1 cut(s)	194
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 392, 461
BstNI	CCWGG	2 cut(s)	28, 246
BstSCI	CCNGG	2 cut(s)	26, 244
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
Bsu15I	ATCGAT	1 cut(s)	235
BsuRI	GGCC	2 cut(s)	244, 353
BsuTUI	ATCGAT	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	530
BtgZI	GCGATG	1 cut(s)	2
BtrI	CACGTC	1 cut(s)	470
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	505, 509
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr10I	RCCGGY	2 cut(s)	59, 507
Cfr13I	GGNCC	2 cut(s)	86, 352
ClaI	ATCGAT	1 cut(s)	235
CsiI	ACCWGGT	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	2 cut(s)	461, 531
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	3 cut(s)	75, 186, 436
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	402
EcoRII	CCWGG	2 cut(s)	26, 244
EcoT14I	CCWWGG	1 cut(s)	530
ErhI	CCWWGG	1 cut(s)	530
FaeI	CATG	2 cut(s)	464, 534
FaiI	YATR	7 cut(s)	206, 320, 338, 345, 347, 462, 532
FatI	CATG	2 cut(s)	460, 530
FauNDI	CATATG	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	57, 81, 309, 408
Fsp4HI	GCNGC	4 cut(s)	57, 81, 309, 408
GluI	GCNGC	4 cut(s)	57, 81, 309, 408
HaeIII	GGCC	2 cut(s)	244, 353
HapII	CCGG	3 cut(s)	60, 305, 508
Hin1II	CATG	2 cut(s)	464, 534
HinfI	GANTC	3 cut(s)	43, 268, 440
HpaII	CCGG	3 cut(s)	60, 305, 508
HphI	GGTGA	2 cut(s)	128, 150
Hpy188I	TCNGA	2 cut(s)	42, 439
Hpy188III	TCNNGA	3 cut(s)	195, 280, 401
HpyAV	CCTTC	2 cut(s)	113, 305
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	469
HpyCH4V	TGCA	2 cut(s)	464, 503
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 392, 461
HpyF3I	CTNAG	3 cut(s)	75, 186, 436
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	2 cut(s)	464, 534
KroI	GCCGGC	1 cut(s)	507
KroNI	GCCGGC	1 cut(s)	509
Kzo9I	GATC	1 cut(s)	191
LguI	GCTCTTC	1 cut(s)	402
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	2 cut(s)	25, 43
MabI	ACCWGGT	1 cut(s)	26
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	3 cut(s)	22, 30, 472
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	4 cut(s)	63, 235, 389, 425
MflI	RGATCY	1 cut(s)	191
MmeI	TCCRAC	2 cut(s)	113, 353
MnlI	CCTC	7 cut(s)	48, 104, 173, 206, 366, 397, 509
MroNI	GCCGGC	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	3 cut(s)	60, 305, 508
MspR9I	CCNGG	2 cut(s)	28, 246
MvaI	CCWGG	2 cut(s)	28, 246
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	3 cut(s)	62, 392, 461
NaeI	GCCGGC	1 cut(s)	509
NcoI	CCATGG	1 cut(s)	530
NdeI	CATATG	1 cut(s)	345
NdeII	GATC	1 cut(s)	191
NgoMIV	GCCGGC	1 cut(s)	507
NlaIII	CATG	2 cut(s)	464, 534
NlaIV	GGNNCC	2 cut(s)	250, 354
NmuCI	GTSAC	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	402
PdiI	GCCGGC	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	43, 268, 440
PflMI	CCANNNNNTGG	2 cut(s)	167, 349
PkrI	GCNGC	4 cut(s)	58, 82, 310, 409
Psp6I	CCWGG	2 cut(s)	26, 244
PspGI	CCWGG	2 cut(s)	26, 244
PspN4I	GGNNCC	2 cut(s)	250, 354
PspPI	GGNCC	2 cut(s)	86, 352
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	380
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	402
SatI	GCNGC	4 cut(s)	57, 81, 309, 408
Sau3AI	GATC	1 cut(s)	191
Sau96I	GGNCC	2 cut(s)	86, 352
ScrFI	CCNGG	2 cut(s)	28, 246
SetI	ASST	9 cut(s)	32, 40, 88, 124, 166, 297, 382, 388, 472
SexAI	ACCWGGT	1 cut(s)	26
SfaNI	GCATC	2 cut(s)	25, 43
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	86
SsiI	CCGC	4 cut(s)	57, 80, 114, 407
StyD4I	CCNGG	2 cut(s)	26, 244
StyI	CCWWGG	1 cut(s)	530
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	1 cut(s)	235
TauI	GCSGC	3 cut(s)	59, 83, 410
TfiI	GAWTC	3 cut(s)	43, 268, 440
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	57, 307
Van91I	CCANNNNNTGG	2 cut(s)	167, 349
VpaK11BI	GGWCC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.