Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Forward (+)

38052020 .. 38053907

Gene Structure 1888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0268100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCTTTTAAATAGTAGCCAGCAGGCAAATGATATCAGATACTCGGGTCATTCTTCCAAAGTCGTTCCAGCTTTGAAAACTGAAGCACTACGTGTAGACTACTCCTCCTGCATCTTCTCCCTTCACTGTGGATTTCATCTTTCATCCGATCCAATCATGCCTATTGGGACACTTGAAGTTCTTCTTGTTGATGCCAAAGGCCTCGACAACAATGACTTTATGGCTGACATGGACCCCTATGTCCTTTTGACTGTAAATACCCAAGAGAAGAAAAGCACTGTGGTTTCAGCTCAAGGATCTAACCCAGAATGGAATGAGACTTTTCTATTCACTATCTCGGACGATTCTGCTGACCTTCACTTGAAAATAATGGAGAAGGACAACTTCAGCGCAGATGATTATGTTGGAGAAGCAATCATTTCTCTAGAGCCAGTTTTCGAAGAAGGAAGCCTTTTGCCAACTGAATACAATGTTGTTAATCAGGAGAAGGAATATCGTGGCGGGATTAAAGTTGGACTCAAATTCACTCCTGAGGCTGAGCCTGAAGAGAGAAGCGAGTATCGTTCTGGCGAGGGCGCTGAAGCAGAGGAGAGCTATGGTGGATGGAAACAGTCTTCTTATGGCGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

210

Amino Acids

23.31

Weight (kDa)

4.38

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	56 - 153	7.7e-21	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	1 cut(s)	501
AclWI	GGATC	2 cut(s)	143, 304
AcsI	RAATTY	1 cut(s)	521
AcuI	CTGAAG	4 cut(s)	102, 370, 564, 600
AdeI	CACNNNGTG	1 cut(s)	92
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	3 cut(s)	76, 176, 364
AluBI	AGCT	3 cut(s)	71, 290, 594
AluI	AGCT	3 cut(s)	71, 290, 594
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	2 cut(s)	143, 304
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	521
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	2 cut(s)	392, 578
AspS9I	GGNCC	1 cut(s)	232
AsuII	TTCGAA	1 cut(s)	438
AvaI	CYCGRG	1 cut(s)	43
AvaII	GGWCC	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	531
BaeI	ACNNNNGTAYC	2 cut(s)	31, 64
BbsI	GAAGAC	1 cut(s)	606
BccI	CCATC	1 cut(s)	597
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	425
BfoI	RGCGCY	1 cut(s)	579
BlpI	GCTNAGC	1 cut(s)	537
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	43
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	2 cut(s)	120, 181
BpiI	GAAGAC	1 cut(s)	606
Bpu1102I	GCTNAGC	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bse1I	ACTGG	1 cut(s)	431
Bse21I	CCTNAGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	143, 608
BseMII	CTCAG	2 cut(s)	522, 528
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	2 cut(s)	94, 602
BshFI	GGCC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	43
BslFI	GGGAC	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	43
Bsp119I	TTCGAA	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	148, 296
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	1 cut(s)	501
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	523, 529
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	143, 304
BspT104I	TTCGAA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	431
BssMI	GATC	2 cut(s)	148, 296
Bst4CI	ACNGT	4 cut(s)	128, 253, 280, 612
Bst6I	CTCTTC	1 cut(s)	540
BstBAI	YACGTR	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	20, 24
BstDEI	CTNAG	2 cut(s)	531, 537
BstF5I	GGATG	2 cut(s)	143, 608
BstH2I	RGCGCY	1 cut(s)	579
BstHHI	GCGC	2 cut(s)	392, 578
BstKTI	GATC	2 cut(s)	151, 299
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	2 cut(s)	148, 296
BstV2I	GAAGAC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
Bsu36I	CCTNAGG	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	143, 608
BtsIMutI	CAGTG	2 cut(s)	124, 276
Cac8I	GCNNGC	2 cut(s)	20, 24
CfoI	GCGC	2 cut(s)	392, 578
Cfr13I	GGNCC	1 cut(s)	232
CviAII	CATG	2 cut(s)	157, 229
DdeI	CTNAG	2 cut(s)	531, 537
DpnI	GATC	2 cut(s)	150, 298
DpnII	GATC	2 cut(s)	148, 296
DraI	TTTAAA	1 cut(s)	9
DraIII	CACNNNGTG	1 cut(s)	92
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco147I	AGGCCT	1 cut(s)	201
Eco32I	GATATC	1 cut(s)	34
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	4 cut(s)	102, 370, 564, 600
Eco81I	CCTNAGG	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	34
FaeI	CATG	2 cut(s)	160, 232
FaiI	YATR	7 cut(s)	158, 221, 230, 240, 402, 597, 621
FalI	AAGNNNNNCTT	6 cut(s)	168, 200, 368, 400, 435, 467
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	156, 228
FauI	CCCGC	1 cut(s)	494
FblI	GTMKAC	1 cut(s)	96
FokI	GGATG	2 cut(s)	130, 615
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	2 cut(s)	391, 577
HaeII	RGCGCY	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	201
HhaI	GCGC	2 cut(s)	392, 578
Hin1II	CATG	2 cut(s)	160, 232
Hin6I	GCGC	2 cut(s)	390, 576
HinP1I	GCGC	2 cut(s)	390, 576
HinfI	GANTC	2 cut(s)	344, 516
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	3 cut(s)	38, 148, 340
Hpy188III	TCNNGA	3 cut(s)	425, 482, 530
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	5 cut(s)	131, 365, 370, 437, 481
HpyCH4III	ACNGT	4 cut(s)	128, 253, 280, 612
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	531, 537
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	2 cut(s)	160, 232
HspAI	GCGC	2 cut(s)	390, 576
Kzo9I	GATC	2 cut(s)	148, 296
LweI	GCATC	2 cut(s)	120, 181
MaeI	CTAG	1 cut(s)	425
MaeII	ACGT	1 cut(s)	91
MalI	GATC	2 cut(s)	150, 298
MboI	GATC	2 cut(s)	148, 296
MboII	GAAGA	7 cut(s)	45, 106, 173, 280, 452, 557, 606
MflI	RGATCY	1 cut(s)	296
MluCI	AATT	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	510
MmeI	TCCRAC	2 cut(s)	385, 493
MnlI	CCTC	6 cut(s)	115, 212, 526, 565, 580, 619
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	3 cut(s)	8, 477, 507
NdeII	GATC	2 cut(s)	148, 296
NlaIII	CATG	2 cut(s)	160, 232
NlaIV	GGNNCC	1 cut(s)	234
NspV	TTCGAA	1 cut(s)	438
PceI	AGGCCT	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	344
PleI	GAGTC	1 cut(s)	510
PpsI	GAGTC	1 cut(s)	510
Ppu21I	YACGTR	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	296
SaqAI	TTAA	3 cut(s)	8, 477, 507
Sau3AI	GATC	2 cut(s)	148, 296
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	510
SetI	ASST	5 cut(s)	73, 94, 292, 357, 596
SfaNI	GCATC	2 cut(s)	120, 181
SfuI	TTCGAA	1 cut(s)	438
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	1 cut(s)	521
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	501
SspMI	CTAG	1 cut(s)	425
StuI	AGGCCT	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	128, 253, 280, 612
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	204, 438
TasI	AATT	1 cut(s)	521
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	3 cut(s)	8, 477, 507
Tru9I	TTAA	3 cut(s)	8, 477, 507
TscAI	CASTG	2 cut(s)	131, 283
TspDTI	ATGAA	2 cut(s)	125, 132
TspRI	CASTG	2 cut(s)	131, 283
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	521
XbaI	TCTAGA	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.