Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Reverse (-)

22656716 .. 22660371

Gene Structure 3656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G185400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCGAGAGTCAAACATACAGCTAACCGGAAAGACAATAAATCTTCTCGCAACCAACCTGGAGGACGCTCACCGGCGCCATCACCTGCAACACAACCGGAACCTTCTGGAAGAACGCAGAGATCAGAGAGGAACAGCCCGACAACTCCAGGAACACAGAAGAAGAAGCGACCTCAGAGGAATGCTCCCACAACTCCAGAAACGCAGAGGAAGAAGCGGCGTTTCAGGCCAGGAACAGTGGCTCTTCGGGAGATTCGTCACTTCCAGAAGACATGTTCGTTGCTTATCCCAGCTGCTCCTTTCATCAGAGCTGTAAGAGAGGTCTCCAACAATCTGTCTCGTGGTTCTATACGTTGGACACCTGATGCTTTATTGGCAATTCAAGAGGCAGCAGAGGATCATTTAGTTCATCTGTTTGAAGATTCCATGCTCTGTGCAATTCATGCAAAGCGTGTCACTCTTAAAGGATTTCGAGCTGGCTCGTCGAATTGGAGGTATAGGGAGGCAGTGGTGAGAGCATCACGACCTCAACCGACACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

181

Amino Acids

20.26

Weight (kDa)

11.69

Isoelectric Point (pI)

65.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	94
Acc36I	ACCTGC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	76
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	383, 419
AjnI	CCWGG	3 cut(s)	58, 148, 229
AluBI	AGCT	4 cut(s)	23, 293, 311, 476
AluI	AGCT	4 cut(s)	23, 293, 311, 476
Alw26I	GTCTC	2 cut(s)	328, 342
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	293, 389
AspLEI	GCGC	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	63, 75, 523
BanI	GGYRCC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	2 cut(s)	280, 401
BccI	CCATC	1 cut(s)	88
BciT130I	CCWGG	3 cut(s)	60, 150, 231
BcoDI	GTCTC	2 cut(s)	328, 342
BfoI	RGCGCY	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	94
BisI	GCNGC	3 cut(s)	218, 294, 390
BlsI	GCNGC	3 cut(s)	219, 295, 391
Bme1390I	CCNGG	3 cut(s)	60, 150, 231
BmiI	GGNNCC	2 cut(s)	78, 102
BmrFI	CCNGG	3 cut(s)	60, 150, 231
BmsI	GCATC	2 cut(s)	355, 527
BpiI	GAAGAC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
BpmI	CTGGAG	3 cut(s)	81, 132, 180
BsaHI	GRCGYC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	328
BsaWI	WCCGGW	2 cut(s)	27, 97
Bse118I	RCCGGY	1 cut(s)	73
BseBI	CCWGG	3 cut(s)	60, 150, 231
BseMII	CTCAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	280, 401
BseYI	CCCAGC	1 cut(s)	289
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	76
BsiSI	CCGG	3 cut(s)	28, 74, 98
BsmAI	GTCTC	2 cut(s)	328, 342
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	229
Bso31I	GGTCTC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	122, 397
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	78, 102
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	405
BspQI	GCTCTTC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	73
BssMI	GATC	2 cut(s)	122, 397
BssNI	GRCGYC	1 cut(s)	77
BssSI	CACGAG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	3 cut(s)	60, 150, 231
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	249
BstACI	GRCGYC	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	2 cut(s)	125, 400
BstMAI	GTCTC	2 cut(s)	328, 342
BstMBI	GATC	2 cut(s)	122, 397
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 374, 443
BstNI	CCWGG	3 cut(s)	60, 150, 231
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	3 cut(s)	58, 148, 229
BstV1I	GCAGC	2 cut(s)	280, 401
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	243, 513
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	478
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	73
CseI	GACGC	1 cut(s)	75
CviAII	CATG	3 cut(s)	273, 427, 443
CviJI	RGCY	8 cut(s)	23, 138, 229, 242, 293, 311, 476, 480
CviKI_1	RGCY	8 cut(s)	23, 138, 229, 242, 293, 311, 476, 480
DdeI	CTNAG	1 cut(s)	174
DinI	GGCGCC	1 cut(s)	78
DpnI	GATC	2 cut(s)	124, 399
DpnII	GATC	2 cut(s)	122, 397
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	328
EcoRII	CCWGG	3 cut(s)	58, 148, 229
EgeI	GGCGCC	1 cut(s)	78
EheI	GGCGCC	1 cut(s)	78
FaeI	CATG	3 cut(s)	276, 430, 446
FaiI	YATR	7 cut(s)	18, 274, 350, 428, 444, 498, 541
FatI	CATG	3 cut(s)	272, 426, 442
Fnu4HI	GCNGC	3 cut(s)	218, 294, 390
Fsp4HI	GCNGC	3 cut(s)	218, 294, 390
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	3 cut(s)	218, 294, 390
GsaI	CCCAGC	1 cut(s)	293
GsuI	CTGGAG	3 cut(s)	81, 132, 180
HaeII	RGCGCY	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	3 cut(s)	28, 74, 98
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	3 cut(s)	276, 430, 446
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	3 cut(s)	9, 253, 422
HpaII	CCGG	3 cut(s)	28, 74, 98
HphI	GGTGA	3 cut(s)	63, 75, 523
Hpy188I	TCNGA	3 cut(s)	127, 177, 308
Hpy188III	TCNNGA	6 cut(s)	108, 197, 248, 265, 383, 522
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	3 cut(s)	89, 437, 446
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 374, 443
HpyF3I	CTNAG	1 cut(s)	174
HpySE526I	ACGT	1 cut(s)	352
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	276, 430, 446
HspAI	GCGC	1 cut(s)	77
KasI	GGCGCC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	122, 397
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	190, 301
Lsp1109I	GCAGC	2 cut(s)	280, 401
LweI	GCATC	2 cut(s)	355, 527
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	2 cut(s)	257, 454
MalI	GATC	2 cut(s)	124, 399
MboI	GATC	2 cut(s)	122, 397
MboII	GAAGA	8 cut(s)	36, 123, 172, 175, 223, 236, 280, 431
MluCI	AATT	3 cut(s)	378, 438, 487
Mly113I	GGCGCC	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	2 cut(s)	335, 351
MseI	TTAA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	3 cut(s)	28, 74, 98
MspR9I	CCNGG	3 cut(s)	60, 150, 231
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	3 cut(s)	60, 150, 231
MwoI	GCNNNNNNNGC	3 cut(s)	226, 374, 443
NarI	GGCGCC	1 cut(s)	77
NdeII	GATC	2 cut(s)	122, 397
NlaIII	CATG	3 cut(s)	276, 430, 446
NlaIV	GGNNCC	2 cut(s)	78, 102
NmuCI	GTSAC	2 cut(s)	257, 454
NspI	RCATGY	1 cut(s)	276
PaqCI	CACCTGC	1 cut(s)	94
PciI	ACATGT	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	253, 422
PfoI	TCCNGGA	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	219, 295, 391
PleI	GAGTC	1 cut(s)	17
PluTI	GGCGCC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	17
PscI	ACATGT	1 cut(s)	272
Psp6I	CCWGG	3 cut(s)	58, 148, 229
PspFI	CCCAGC	1 cut(s)	289
PspGI	CCWGG	3 cut(s)	58, 148, 229
PspN4I	GGNNCC	2 cut(s)	78, 102
PvuII	CAGCTG	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	3 cut(s)	218, 294, 390
Sau3AI	GATC	2 cut(s)	122, 397
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	3 cut(s)	60, 150, 231
SfaNI	GCATC	2 cut(s)	355, 527
SfoI	GGCGCC	1 cut(s)	78
SgrAI	CRCCGGYG	1 cut(s)	73
Sse9I	AATT	3 cut(s)	378, 438, 487
SsiI	CCGC	1 cut(s)	217
SspDI	GGCGCC	1 cut(s)	76
StyD4I	CCNGG	3 cut(s)	58, 148, 229
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	472, 485
TasI	AATT	3 cut(s)	378, 438, 487
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	253, 422
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	2 cut(s)	243, 513
TseFI	GTSAC	2 cut(s)	257, 454
TseI	GCWGC	2 cut(s)	293, 389
Tsp45I	GTSAC	2 cut(s)	257, 454
TspDTI	ATGAA	3 cut(s)	292, 398, 431
TspRI	CASTG	2 cut(s)	243, 513
XceI	RCATGY	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.