Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Reverse (-)

13919565 .. 13923052

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16180.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCGAGGGTCAAGCACACAGCTACCAGGAGAGGCCGGACTCAATCCGCTCGAACGCCACCAGAAGGAAGCTCGCCGGCGACGTCACCGGCAACGTCTAGAGGGCCGGGAAGGCCGAGGAAAAATCCGATAAGTCCAGGATCACGAACGCCGAGGACACCTAGGAGTAATGCCGCAACAGGTCCACCCACACAGACACAGAGGAAGAAGAGACGTAACAGACCAGGTACTGCAGCTCTTAGAGAGATTCGTTTCTTTCAGAAATCAGTGAAGCTAGTTATCCCATCCGCACCCTTCATCAGATGTGTAAGAGAAATCAGCAGTACCTTGTCTAATGATGTTACACGTTGGACTGCCGAAGCTCTACAGTGTATTCATGAGGTGAATAACTACTTTTCTTCTAGGCAGCAGAGGATTATCTGGTTCATTTGTTTGAAGATTCAATGCTCTGTGCAATTCATGCAAAGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

158

Amino Acids

17.64

Weight (kDa)

11.93

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	75 - 132	4.6e-07	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	3 cut(s)	48, 174, 288
AclWI	GGATC	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	2 cut(s)	229, 325
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	436, 443
AjnI	CCWGG	3 cut(s)	26, 136, 223
AluBI	AGCT	5 cut(s)	23, 72, 236, 274, 362
AluI	AGCT	5 cut(s)	23, 72, 236, 274, 362
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	148
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	3 cut(s)	34, 104, 113
ApeKI	GCWGC	2 cut(s)	233, 406
AspA2I	CCTAGG	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	104, 182
AsuC2I	CCSGG	1 cut(s)	108
AsuHPI	GGTGA	2 cut(s)	78, 394
AvaII	GGWCC	1 cut(s)	182
AvrII	CCTAGG	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	245, 418
BccI	CCATC	1 cut(s)	292
BciT130I	CCWGG	3 cut(s)	28, 138, 225
BcnI	CCSGG	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	4 cut(s)	99, 162, 275, 402
BfmI	CTRYAG	2 cut(s)	231, 365
BglI	GCCNNNNNGGC	1 cut(s)	112
BisI	GCNGC	3 cut(s)	174, 234, 407
BlnI	CCTAGG	1 cut(s)	161
BlsI	GCNGC	3 cut(s)	175, 235, 408
Bme1390I	CCNGG	4 cut(s)	28, 108, 138, 225
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	104, 182
BmrFI	CCNGG	4 cut(s)	28, 108, 138, 225
BpuMI	CCSGG	1 cut(s)	108
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	116, 152, 161
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	2 cut(s)	76, 88
BseBI	CCWGG	3 cut(s)	28, 138, 225
BseDI	CCNNGG	3 cut(s)	116, 152, 161
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseXI	GCAGC	2 cut(s)	245, 418
BshFI	GGCC	3 cut(s)	36, 106, 115
BsiSI	CCGG	4 cut(s)	37, 77, 89, 107
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	1 cut(s)	205
BsmBI	CGTCTC	1 cut(s)	205
BsnI	GGCC	3 cut(s)	36, 106, 115
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	3 cut(s)	48, 174, 288
BspANI	GGCC	3 cut(s)	36, 106, 115
BspHI	TCATGA	1 cut(s)	376
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	50
BsrFI	RCCGGY	2 cut(s)	76, 88
BssAI	RCCGGY	2 cut(s)	76, 88
BssECI	CCNNGG	3 cut(s)	116, 152, 161
BssMI	GATC	1 cut(s)	140
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	161
Bst2UI	CCWGG	3 cut(s)	28, 138, 225
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	83
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstC8I	GCNNGC	2 cut(s)	74, 78
BstDEI	CTNAG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	284
BstKTI	GATC	1 cut(s)	143
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 460
BstNI	CCWGG	3 cut(s)	28, 138, 225
BstSCI	CCNGG	4 cut(s)	26, 106, 136, 223
BstSFI	CTRYAG	2 cut(s)	231, 365
BstV1I	GCAGC	2 cut(s)	245, 418
BsuRI	GGCC	3 cut(s)	36, 106, 115
BtsCI	GGATG	1 cut(s)	284
BtsIMutI	CAGTG	2 cut(s)	273, 374
Cac8I	GCNNGC	2 cut(s)	74, 78
CaiI	CAGNNNCTG	1 cut(s)	230
CciI	TCATGA	1 cut(s)	376
Cfr10I	RCCGGY	2 cut(s)	76, 88
Cfr13I	GGNCC	2 cut(s)	104, 182
CsiI	ACCWGGT	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	228, 324
CviAII	CATG	2 cut(s)	377, 460
CviJI	RGCY	8 cut(s)	23, 36, 72, 106, 115, 236, 274, 362
CviKI_1	RGCY	8 cut(s)	23, 36, 72, 106, 115, 236, 274, 362
CviQI	GTAC	2 cut(s)	228, 324
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	182
EcoRII	CCWGG	3 cut(s)	26, 136, 223
EcoT14I	CCWWGG	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	161
Esp3I	CGTCTC	1 cut(s)	205
FaeI	CATG	2 cut(s)	380, 463
FaiI	YATR	2 cut(s)	378, 461
FatI	CATG	2 cut(s)	376, 459
Fnu4HI	GCNGC	3 cut(s)	174, 234, 407
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	3 cut(s)	174, 234, 407
FspBI	CTAG	4 cut(s)	99, 162, 275, 402
GluI	GCNGC	3 cut(s)	174, 234, 407
HaeIII	GGCC	3 cut(s)	36, 106, 115
HapII	CCGG	4 cut(s)	37, 77, 89, 107
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	380, 463
HinfI	GANTC	3 cut(s)	40, 247, 439
HpaII	CCGG	4 cut(s)	37, 77, 89, 107
HphI	GGTGA	2 cut(s)	78, 394
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	3 cut(s)	129, 261, 302
Hpy188III	TCNNGA	3 cut(s)	99, 144, 377
Hpy8I	GTNNAC	1 cut(s)	185
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	59, 105, 304
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	4 cut(s)	83, 95, 214, 346
HpyCH4V	TGCA	3 cut(s)	233, 454, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 460
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	4 cut(s)	83, 95, 214, 346
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	380, 463
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	140
Lsp1109I	GCAGC	2 cut(s)	245, 418
MabI	ACCWGGT	1 cut(s)	223
MaeI	CTAG	4 cut(s)	99, 162, 275, 402
MaeII	ACGT	4 cut(s)	83, 95, 214, 346
MaeIII	GTNAC	3 cut(s)	84, 215, 340
MalI	GATC	1 cut(s)	142
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	1 cut(s)	140
MboII	GAAGA	4 cut(s)	217, 220, 390, 448
MluCI	AATT	1 cut(s)	455
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	329
MnlI	CCTC	7 cut(s)	26, 95, 111, 147, 195, 373, 405
MreI	CGCCGGCG	1 cut(s)	76
MroNI	GCCGGC	1 cut(s)	76
MspI	CCGG	4 cut(s)	37, 77, 89, 107
MspR9I	CCNGG	4 cut(s)	28, 108, 138, 225
MvaI	CCWGG	3 cut(s)	28, 138, 225
MwoI	GCNNNNNNNGC	2 cut(s)	112, 460
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	108
NdeII	GATC	1 cut(s)	140
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	380, 463
NmeAIII	GCCGAG	2 cut(s)	141, 177
NmuCI	GTSAC	1 cut(s)	84
PagI	TCATGA	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PdiI	GCCGGC	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	247, 439
PfoI	TCCNGGA	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	175, 235, 408
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp6I	CCWGG	3 cut(s)	26, 136, 223
PspGI	CCWGG	3 cut(s)	26, 136, 223
PspPI	GGNCC	2 cut(s)	104, 182
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	230
RsaI	GTAC	2 cut(s)	229, 325
RsaNI	GTAC	2 cut(s)	228, 324
SatI	GCNGC	3 cut(s)	174, 234, 407
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	2 cut(s)	104, 182
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	4 cut(s)	28, 108, 138, 225
SexAI	ACCWGGT	1 cut(s)	223
SfcI	CTRYAG	2 cut(s)	231, 365
SfiI	GGCCNNNNNGGCC	1 cut(s)	112
SgrAI	CRCCGGYG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	182
Sse9I	AATT	1 cut(s)	455
SsiI	CCGC	3 cut(s)	48, 174, 288
SspMI	CTAG	4 cut(s)	99, 162, 275, 402
StyD4I	CCNGG	4 cut(s)	26, 106, 136, 223
StyI	CCWWGG	1 cut(s)	161
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	4 cut(s)	86, 98, 217, 349
TaqI	TCGA	1 cut(s)	52
TasI	AATT	1 cut(s)	455
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	247, 439
TscAI	CASTG	2 cut(s)	273, 374
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	2 cut(s)	233, 406
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	4 cut(s)	286, 365, 415, 448
TspRI	CASTG	2 cut(s)	273, 374
VpaK11BI	GGWCC	1 cut(s)	182
XbaI	TCTAGA	1 cut(s)	98
XmaJI	CCTAGG	1 cut(s)	161
XspI	CTAG	4 cut(s)	99, 162, 275, 402
ZraI	GACGTC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.