Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Reverse (-)

51130412 .. 51134537

Gene Structure 4126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG282100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCGAGGGTCAAGCACACAGCTGCCAGGAAAGACCGGATTAAAACCGCTCGCCGGCAACCAGGAGGCTCGCCGGCGCCGGCGCCGGCGCCGTCACCGGGACCTTCTGGAAGGCCTGGAAGGCCGAGGAAAAGTCCAACAAGTCCAGGATCACAGAGGCAGGGGACACCTAGGAGGAATGCCACAACAGGTCCAGAAGCACAGACACAGAGGAAGAAGAGACGTAACAGGCCAGGAACTGTAGCTCTTCGGGAGATTCGTCACTTTCAGAAGTCGGTGAAGCTGGTTATCCCAAGTGCACCTTTCATCAGAGCTGTCAGAGAGATCACCGGTACCTTGTCTAATGATGTTACGCGTTGGACTGCTGAAGCTTTACAGTGTATTCATGAGGTGAATAACTATTTTTCTTCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

138

Amino Acids

15.18

Weight (kDa)

12.0

Isoelectric Point (pI)

71.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	78 - 135	4.2e-08	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	332
AccB1I	GGYRCC	4 cut(s)	76, 82, 88, 332
AccBSI	CCGCTC	1 cut(s)	50
AccII	CGCG	1 cut(s)	355
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	3 cut(s)	77, 83, 89
AfaI	GTAC	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	54, 98
AflIII	ACRYGT	1 cut(s)	353
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	411
AjnI	CCWGG	5 cut(s)	26, 61, 115, 145, 232
AluBI	AGCT	5 cut(s)	23, 245, 283, 314, 371
AluI	AGCT	5 cut(s)	23, 245, 283, 314, 371
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	214
Alw44I	GTGCAC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	113, 122, 230
ApaLI	GTGCAC	1 cut(s)	297
ApeKI	GCWGC	1 cut(s)	23
AsiGI	ACCGGT	1 cut(s)	329
Asp718I	GGTACC	1 cut(s)	332
AspA2I	CCTAGG	1 cut(s)	170
AspLEI	GCGC	3 cut(s)	79, 85, 91
AspS9I	GGNCC	2 cut(s)	101, 191
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	4 cut(s)	87, 289, 319, 403
AvaII	GGWCC	2 cut(s)	101, 191
AvrII	CCTAGG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	301
BanI	GGYRCC	4 cut(s)	76, 82, 88, 332
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	10
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	5 cut(s)	28, 63, 117, 147, 234
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	3 cut(s)	80, 86, 92
BglI	GCCNNNNNGGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	24
BlnI	CCTAGG	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	6 cut(s)	28, 63, 99, 117, 147, 234
Bme18I	GGWCC	2 cut(s)	101, 191
BmgT120I	GGNCC	2 cut(s)	101, 191
BmiI	GGNNCC	5 cut(s)	78, 84, 90, 102, 334
BmrFI	CCNGG	6 cut(s)	28, 63, 99, 117, 147, 234
BpuMI	CCSGG	1 cut(s)	99
BsaHI	GRCGYC	3 cut(s)	77, 83, 89
BsaJI	CCNNGG	2 cut(s)	125, 170
BsaWI	WCCGGW	2 cut(s)	36, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 98
Bse118I	RCCGGY	5 cut(s)	54, 73, 79, 85, 329
BseBI	CCWGG	5 cut(s)	28, 63, 117, 147, 234
BseDI	CCNNGG	2 cut(s)	125, 170
BseLI	CCNNNNNNNGG	2 cut(s)	54, 98
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	355
BshFI	GGCC	3 cut(s)	115, 124, 232
BshNI	GGYRCC	4 cut(s)	76, 82, 88, 332
BshTI	ACCGGT	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	301
BsiSI	CCGG	7 cut(s)	37, 55, 74, 80, 86, 98, 330
BslFI	GGGAC	2 cut(s)	114, 178
BslI	CCNNNNNNNGG	2 cut(s)	54, 98
BsmAI	GTCTC	1 cut(s)	214
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	2 cut(s)	114, 178
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	3 cut(s)	115, 124, 232
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	149, 324
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	3 cut(s)	115, 124, 232
BspFNI	CGCG	1 cut(s)	355
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	5 cut(s)	78, 84, 90, 102, 334
BspPI	GGATC	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	252
BspT107I	GGYRCC	4 cut(s)	76, 82, 88, 332
BsrBI	CCGCTC	1 cut(s)	50
BsrFI	RCCGGY	5 cut(s)	54, 73, 79, 85, 329
BssAI	RCCGGY	5 cut(s)	54, 73, 79, 85, 329
BssECI	CCNNGG	2 cut(s)	125, 170
BssMI	GATC	2 cut(s)	149, 324
BssNI	GRCGYC	3 cut(s)	77, 83, 89
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	5 cut(s)	28, 63, 117, 147, 234
Bst4CI	ACNGT	2 cut(s)	241, 378
Bst6I	CTCTTC	2 cut(s)	212, 252
BstACI	GRCGYC	3 cut(s)	77, 83, 89
BstC8I	GCNNGC	6 cut(s)	52, 56, 71, 75, 81, 87
BstFNI	CGCG	1 cut(s)	355
BstH2I	RGCGCY	3 cut(s)	80, 86, 92
BstHHI	GCGC	3 cut(s)	79, 85, 91
BstKTI	GATC	2 cut(s)	152, 327
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	149, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	5 cut(s)	28, 63, 117, 147, 234
BstSCI	CCNGG	6 cut(s)	26, 61, 97, 115, 145, 232
BstSFI	CTRYAG	1 cut(s)	240
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	10
BsuRI	GGCC	3 cut(s)	115, 124, 232
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	6 cut(s)	52, 56, 71, 75, 81, 87
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	3 cut(s)	79, 85, 91
Cfr10I	RCCGGY	5 cut(s)	54, 73, 79, 85, 329
Cfr13I	GGNCC	2 cut(s)	101, 191
Csp6I	GTAC	1 cut(s)	333
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	1 cut(s)	386
CviJI	RGCY	9 cut(s)	23, 69, 115, 124, 232, 245, 283, 314, 371
CviKI_1	RGCY	9 cut(s)	23, 69, 115, 124, 232, 245, 283, 314, 371
CviQI	GTAC	1 cut(s)	333
DinI	GGCGCC	3 cut(s)	78, 84, 90
DpnI	GATC	2 cut(s)	151, 326
DpnII	GATC	2 cut(s)	149, 324
Eam1104I	CTCTTC	2 cut(s)	212, 252
EarI	CTCTTC	2 cut(s)	212, 252
Eco130I	CCWWGG	1 cut(s)	170
Eco147I	AGGCCT	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	101, 191
Eco57I	CTGAAG	1 cut(s)	387
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRII	CCWGG	5 cut(s)	26, 61, 115, 145, 232
EcoT14I	CCWWGG	1 cut(s)	170
EgeI	GGCGCC	3 cut(s)	78, 84, 90
EheI	GGCGCC	3 cut(s)	78, 84, 90
ErhI	CCWWGG	1 cut(s)	170
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	389
FaiI	YATR	1 cut(s)	387
FalI	AAGNNNNNCTT	2 cut(s)	286, 318
FaqI	GGGAC	2 cut(s)	114, 178
FatI	CATG	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	3 cut(s)	78, 84, 90
GluI	GCNGC	1 cut(s)	24
HaeII	RGCGCY	3 cut(s)	80, 86, 92
HaeIII	GGCC	3 cut(s)	115, 124, 232
HapII	CCGG	7 cut(s)	37, 55, 74, 80, 86, 98, 330
HhaI	GCGC	3 cut(s)	79, 85, 91
Hin1I	GRCGYC	3 cut(s)	77, 83, 89
Hin1II	CATG	1 cut(s)	389
Hin6I	GCGC	3 cut(s)	77, 83, 89
HinP1I	GCGC	3 cut(s)	77, 83, 89
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	1 cut(s)	256
HpaII	CCGG	7 cut(s)	37, 55, 74, 80, 86, 98, 330
HphI	GGTGA	4 cut(s)	87, 289, 319, 403
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	3 cut(s)	270, 311, 320
Hpy188III	TCNNGA	4 cut(s)	108, 194, 251, 386
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	3 cut(s)	105, 114, 114
HpyCH4III	ACNGT	2 cut(s)	241, 378
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	223
Hsp92I	GRCGYC	3 cut(s)	77, 83, 89
Hsp92II	CATG	1 cut(s)	389
HspAI	GCGC	3 cut(s)	77, 83, 89
KasI	GGCGCC	3 cut(s)	76, 82, 88
KpnI	GGTACC	1 cut(s)	336
KroI	GCCGGC	4 cut(s)	54, 73, 79, 85
KroNI	GCCGGC	4 cut(s)	56, 75, 81, 87
Kzo9I	GATC	2 cut(s)	149, 324
LguI	GCTCTTC	1 cut(s)	252
Lsp1109I	GCAGC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	4 cut(s)	93, 224, 260, 349
MalI	GATC	2 cut(s)	151, 326
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	2 cut(s)	149, 324
MboII	GAAGA	4 cut(s)	226, 229, 239, 399
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	1 cut(s)	411
MluI	ACGCGT	1 cut(s)	353
Mly113I	GGCGCC	3 cut(s)	77, 83, 89
MmeI	TCCRAC	2 cut(s)	161, 338
MnlI	CCTC	6 cut(s)	59, 120, 150, 168, 204, 382
MreI	CGCCGGCG	3 cut(s)	73, 79, 85
MroNI	GCCGGC	4 cut(s)	54, 73, 79, 85
MseI	TTAA	2 cut(s)	42, 415
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	7 cut(s)	37, 55, 74, 80, 86, 98, 330
MspR9I	CCNGG	6 cut(s)	28, 63, 99, 117, 147, 234
Mva1269I	GAATGC	1 cut(s)	184
MvaI	CCWGG	5 cut(s)	28, 63, 117, 147, 234
MvnI	CGCG	1 cut(s)	355
MwoI	GCNNNNNNNGC	1 cut(s)	121
NaeI	GCCGGC	4 cut(s)	56, 75, 81, 87
NarI	GGCGCC	3 cut(s)	77, 83, 89
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	2 cut(s)	149, 324
NgoMIV	GCCGGC	4 cut(s)	54, 73, 79, 85
NlaIII	CATG	1 cut(s)	389
NlaIV	GGNNCC	5 cut(s)	78, 84, 90, 102, 334
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	93, 260
PagI	TCATGA	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	115
PciSI	GCTCTTC	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	1 cut(s)	256
PctI	GAATGC	1 cut(s)	184
PdiI	GCCGGC	4 cut(s)	56, 75, 81, 87
PfeI	GAWTC	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	145
PinAI	ACCGGT	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	25
PluTI	GGCGCC	3 cut(s)	80, 86, 92
PpuMI	RGGWCCY	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	5 cut(s)	26, 61, 115, 145, 232
PspGI	CCWGG	5 cut(s)	26, 61, 115, 145, 232
PspN4I	GGNNCC	5 cut(s)	78, 84, 90, 102, 334
PspPI	GGNCC	2 cut(s)	101, 191
PspPPI	RGGWCCY	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	42, 415
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	149, 324
Sau96I	GGNCC	2 cut(s)	101, 191
ScrFI	CCNGG	6 cut(s)	28, 63, 99, 117, 147, 234
SduI	GDGCHC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	240
SfiI	GGCCNNNNNGGCC	1 cut(s)	121
SfoI	GGCGCC	3 cut(s)	78, 84, 90
SgrAI	CRCCGGYG	3 cut(s)	73, 79, 85
SinI	GGWCC	2 cut(s)	101, 191
Sse9I	AATT	1 cut(s)	411
SseBI	AGGCCT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	48
SspDI	GGCGCC	3 cut(s)	76, 82, 88
SspMI	CTAG	1 cut(s)	171
StuI	AGGCCT	1 cut(s)	115
StyD4I	CCNGG	6 cut(s)	26, 61, 97, 115, 145, 232
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	2 cut(s)	241, 378
TaiI	ACGT	1 cut(s)	226
TasI	AATT	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	42, 415
Tru9I	TTAA	2 cut(s)	42, 415
TscAI	CASTG	1 cut(s)	383
TseFI	GTSAC	2 cut(s)	93, 260
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	2 cut(s)	93, 260
TspDTI	ATGAA	2 cut(s)	295, 374
TspRI	CASTG	1 cut(s)	383
VneI	GTGCAC	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	101, 191
XmaJI	CCTAGG	1 cut(s)	170
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.