Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Forward (+)

19583860 .. 19586696

Gene Structure 2837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1162100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCGAGGATTAAGCACACTGCCCACAAAAAATCCGTCGCCAGAAAATCGTCAACTCCCAAAGAAGCTGCTGCTGGTACTGGCGGAACCTCCGCGGCGTCGCCTGCAAAACAACCGGAACCATCTGCACCATGGAGGAGATCCGAGAGGAGTTCTCAGAGAACTTCTGAATCTCAAGAGCAGCAGGAACCTGAGACGAATGCTCAAGCAACACCGCAATCAAAGAAGCAGAAGCAATCTGAGAGGAATCCTCAAACGCCTCAATCAAAGAAGCAGAAGCCATCTGAGAGGAATCATCCACCAACACAGAAGAAGAAATGGCGTTATAGGCCAGGAACCGTGGCTCTTCGGGAGATCAGATACTACCAGAAGACGTGGAATCTGATCATCCCCGCTGCTCCATTTATCAGAACCGTGAGAGAGATCAGCATCAATATGTCTAAAGATCCCGTACGTTGGACACCTGAAGCTTTACAAGCAATTCAAGAGGCAGCCGAGGATTTTTTAGTCCGCCTGTTTGAGGATTCGATGCTTTGTGCAATCCATGCCAGGCGTGTCACTCTTATGAAGAAGGATTTAGAGCTAGCTCGACGGATTCGAGGGGAAGGGAGGTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

207

Amino Acids

23.55

Weight (kDa)

10.47

Isoelectric Point (pI)

74.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	111 - 199	1.4e-25	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	95
AciI	CCGC	6 cut(s)	84, 93, 95, 215, 393, 511
AclWI	GGATC	2 cut(s)	135, 440
AcuI	CTGAAG	1 cut(s)	486
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	79, 453
AfiI	CCNNNNNNNGG	2 cut(s)	456, 520
AgsI	TTSAA	1 cut(s)	485
AjiI	CACGTC	1 cut(s)	375
AjnI	CCWGG	2 cut(s)	331, 548
AloI	GAACNNNNNNTCC	1 cut(s)	596
AluBI	AGCT	4 cut(s)	68, 470, 583, 587
AluI	AGCT	4 cut(s)	68, 470, 583, 587
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	135, 440
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	5 cut(s)	68, 71, 181, 395, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AsuNHI	GCTAGC	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	5 cut(s)	55, 58, 193, 382, 503
BccI	CCATC	2 cut(s)	130, 289
BciT130I	CCWGG	2 cut(s)	333, 550
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	584
BisI	GCNGC	6 cut(s)	69, 72, 96, 182, 396, 492
BlsI	GCNGC	6 cut(s)	70, 73, 97, 183, 397, 493
Bme1390I	CCNGG	2 cut(s)	333, 550
BmgBI	CACGTC	1 cut(s)	375
BmiI	GGNNCC	4 cut(s)	88, 120, 189, 337
BmrFI	CCNGG	2 cut(s)	333, 550
BmsI	GCATC	2 cut(s)	438, 519
BmtI	GCTAGC	1 cut(s)	587
BpiI	GAAGAC	1 cut(s)	377
BplI	GAGNNNNNCTC	4 cut(s)	139, 171, 235, 267
BpuEI	CTTGAG	2 cut(s)	159, 189
BsaBI	GATNNNNATC	1 cut(s)	428
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	4 cut(s)	93, 131, 339, 495
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	2 cut(s)	456, 520
Bse1I	ACTGG	1 cut(s)	85
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	2 cut(s)	333, 550
BseDI	CCNNGG	4 cut(s)	93, 131, 339, 495
BseGI	GGATG	2 cut(s)	295, 387
BseJI	GATNNNNATC	1 cut(s)	428
BseLI	CCNNNNNNNGG	2 cut(s)	456, 520
BseMII	CTCAG	4 cut(s)	170, 183, 231, 276
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	2 cut(s)	151, 163
BseXI	GCAGC	5 cut(s)	55, 58, 193, 382, 503
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	95
BshFI	GGCC	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	116
BsiWI	CGTACG	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	456, 520
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	331
Bsp143I	GATC	5 cut(s)	140, 354, 384, 423, 445
Bsp19I	CCATGG	1 cut(s)	131
BspACI	CCGC	6 cut(s)	84, 93, 95, 215, 393, 511
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	4 cut(s)	169, 184, 232, 277
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	4 cut(s)	88, 120, 189, 337
BspOI	GCTAGC	1 cut(s)	587
BspPI	GGATC	2 cut(s)	135, 440
BspQI	GCTCTTC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	4 cut(s)	93, 131, 339, 495
BssMI	GATC	5 cut(s)	140, 354, 384, 423, 445
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	333, 550
Bst4CI	ACNGT	2 cut(s)	340, 415
Bst6I	CTCTTC	1 cut(s)	351
BstACI	GRCGYC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	105, 585
BstDEI	CTNAG	4 cut(s)	156, 192, 240, 285
BstDSI	CCRYGG	3 cut(s)	93, 131, 339
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	2 cut(s)	295, 387
BstFNI	CGCG	1 cut(s)	95
BstKTI	GATC	5 cut(s)	143, 357, 387, 426, 448
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	5 cut(s)	140, 354, 384, 423, 445
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 328, 476, 545
BstNI	CCWGG	2 cut(s)	333, 550
BstSCI	CCNGG	2 cut(s)	331, 548
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	5 cut(s)	55, 58, 193, 382, 503
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	2 cut(s)	140, 445
BstYI	RGATCY	2 cut(s)	140, 445
BsuRI	GGCC	1 cut(s)	331
BtgI	CCRYGG	3 cut(s)	93, 131, 339
BtrI	CACGTC	1 cut(s)	375
BtsCI	GGATG	2 cut(s)	295, 387
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	105, 585
Cfr42I	CCGCGG	1 cut(s)	96
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	78, 452
CviAII	CATG	2 cut(s)	132, 545
CviJI	RGCY	8 cut(s)	68, 280, 331, 344, 470, 494, 583, 587
CviKI_1	RGCY	8 cut(s)	68, 280, 331, 344, 470, 494, 583, 587
CviQI	GTAC	2 cut(s)	78, 452
DdeI	CTNAG	4 cut(s)	156, 192, 240, 285
DpnI	GATC	5 cut(s)	142, 356, 386, 425, 447
DpnII	GATC	5 cut(s)	140, 354, 384, 423, 445
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
EciI	GGCGGA	2 cut(s)	99, 500
Eco130I	CCWWGG	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	486
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	331, 548
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	2 cut(s)	135, 548
FaiI	YATR	5 cut(s)	133, 327, 437, 546, 566
FatI	CATG	2 cut(s)	131, 544
FauI	CCCGC	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	6 cut(s)	69, 72, 96, 182, 396, 492
FokI	GGATG	2 cut(s)	282, 374
Fsp4HI	GCNGC	6 cut(s)	69, 72, 96, 182, 396, 492
FspBI	CTAG	1 cut(s)	584
GluI	GCNGC	6 cut(s)	69, 72, 96, 182, 396, 492
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	135, 548
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	6 cut(s)	170, 247, 292, 379, 524, 595
HpaII	CCGG	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	8 cut(s)	145, 159, 169, 241, 286, 359, 384, 410
Hpy188III	TCNNGA	3 cut(s)	176, 350, 485
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	3 cut(s)	41, 103, 594
HpyAV	CCTTC	2 cut(s)	565, 599
HpyCH4III	ACNGT	2 cut(s)	340, 415
HpyCH4IV	ACGT	2 cut(s)	374, 454
HpyCH4V	TGCA	3 cut(s)	107, 128, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 328, 476, 545
HpyF3I	CTNAG	4 cut(s)	156, 192, 240, 285
HpySE526I	ACGT	2 cut(s)	374, 454
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	135, 548
Ksp22I	TGATCA	1 cut(s)	384
KspI	CCGCGG	1 cut(s)	96
Kzo9I	GATC	5 cut(s)	140, 354, 384, 423, 445
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	5 cut(s)	55, 58, 193, 382, 503
LweI	GCATC	2 cut(s)	438, 519
MaeI	CTAG	1 cut(s)	584
MaeII	ACGT	2 cut(s)	374, 454
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	5 cut(s)	142, 356, 386, 425, 447
MboI	GATC	5 cut(s)	140, 354, 384, 423, 445
MboII	GAAGA	5 cut(s)	322, 325, 338, 382, 580
MflI	RGATCY	2 cut(s)	140, 445
MluCI	AATT	1 cut(s)	480
MmeI	TCCRAC	1 cut(s)	437
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	2 cut(s)	434, 563
MspA1I	CMGCKG	2 cut(s)	95, 395
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	2 cut(s)	333, 550
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	2 cut(s)	333, 550
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	4 cut(s)	104, 328, 476, 545
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	5 cut(s)	140, 354, 384, 423, 445
NheI	GCTAGC	1 cut(s)	583
NlaIII	CATG	2 cut(s)	135, 548
NlaIV	GGNNCC	4 cut(s)	88, 120, 189, 337
NmeAIII	GCCGAG	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	595
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	6 cut(s)	170, 247, 292, 379, 524, 595
Pfl23II	CGTACG	1 cut(s)	451
PkrI	GCNGC	6 cut(s)	70, 73, 97, 183, 397, 493
Psp6I	CCWGG	2 cut(s)	331, 548
PspGI	CCWGG	2 cut(s)	331, 548
PspLI	CGTACG	1 cut(s)	451
PspN4I	GGNNCC	4 cut(s)	88, 120, 189, 337
PsuI	RGATCY	2 cut(s)	140, 445
RsaI	GTAC	2 cut(s)	79, 453
RsaNI	GTAC	2 cut(s)	78, 452
RseI	CAYNNNNRTG	2 cut(s)	434, 563
SacII	CCGCGG	1 cut(s)	96
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	12
SatI	GCNGC	6 cut(s)	69, 72, 96, 182, 396, 492
Sau3AI	GATC	5 cut(s)	140, 354, 384, 423, 445
ScrFI	CCNGG	2 cut(s)	333, 550
SfaNI	GCATC	2 cut(s)	438, 519
Sfr303I	CCGCGG	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	96
SmiMI	CAYNNNNRTG	2 cut(s)	434, 563
SmlI	CTYRAG	2 cut(s)	174, 204
SmoI	CTYRAG	2 cut(s)	174, 204
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	6 cut(s)	84, 93, 95, 215, 393, 511
SspMI	CTAG	1 cut(s)	584
StyD4I	CCNGG	2 cut(s)	331, 548
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	340, 415
TaiI	ACGT	2 cut(s)	377, 457
TaqI	TCGA	3 cut(s)	527, 589, 598
TasI	AATT	1 cut(s)	480
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	6 cut(s)	170, 247, 292, 379, 524, 595
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	5 cut(s)	68, 71, 181, 395, 491
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	1 cut(s)	581
TspGWI	ACGGA	2 cut(s)	25, 607
TspRI	CASTG	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XspI	CTAG	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.