Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Reverse (-)

53166952 .. 53171281

Gene Structure 4330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG266300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTTGATTTTAATGTTCCTAATTTCTTTGGCTTTTTTTTTTTTTGATAAATTGAAGGGACCTTCTGGAAGGCCTGGAAGGCCGAGGAAAAGTCCAAGGAAAAGTCCGACAAGTCCAGGATCACAGAGGCAGGGGACACCTAGGAGGAATGCCACAACAGGTCCAGAAGCACAGACACAGAGGAAGAAGAGACGTAACAGGCCAGGAACTGTAGCTCTTCGGGAGATTCGTCACTTTCAGAAGTCGGTGAAGCTGGTTATCCCAAGTGCACCTTTCATCAGAGCTGTAAGTTCACTAACTCACTTATTGATGCATATAAGCACTTGCACCCACACATGTAAGTGCTTTTGCACGATGCATGAGCCAGTGAGCCACATCCAGCAAGATGGTACAGATGGAAAAGAAATGTTAGGTAGTGTTAGTGATAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

144

Amino Acids

16.13

Weight (kDa)

11.15

Isoelectric Point (pI)

65.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	127
AfaI	GTAC	1 cut(s)	391
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	3 cut(s)	73, 115, 202
AluBI	AGCT	3 cut(s)	215, 253, 284
AluI	AGCT	3 cut(s)	215, 253, 284
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	184
Alw44I	GTGCAC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	127
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	3 cut(s)	71, 80, 200
ApaLI	GTGCAC	1 cut(s)	267
AspA2I	CCTAGG	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	59, 161
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	2 cut(s)	59, 161
AvrII	CCTAGG	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	271
Bbv12I	GWGCWC	1 cut(s)	271
BccI	CCATC	2 cut(s)	380, 389
BciT130I	CCWGG	3 cut(s)	75, 117, 204
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	210
BglI	GCCNNNNNGGC	1 cut(s)	79
BlnI	CCTAGG	1 cut(s)	140
Bme1390I	CCNGG	3 cut(s)	75, 117, 204
Bme18I	GGWCC	2 cut(s)	59, 161
BmgT120I	GGNCC	2 cut(s)	59, 161
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	3 cut(s)	75, 117, 204
BmsI	GCATC	2 cut(s)	300, 345
BsaJI	CCNNGG	3 cut(s)	83, 95, 140
Bse1I	ACTGG	1 cut(s)	365
BseBI	CCWGG	3 cut(s)	75, 117, 204
BseDI	CCNNGG	3 cut(s)	83, 95, 140
BseGI	GGATG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	271
BshFI	GGCC	3 cut(s)	73, 82, 202
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	2 cut(s)	72, 148
BsmAI	GTCTC	1 cut(s)	184
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	2 cut(s)	72, 148
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	73, 82, 202
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	119
BspANI	GGCC	3 cut(s)	73, 82, 202
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	3 cut(s)	83, 95, 140
BssMI	GATC	1 cut(s)	119
BssT1I	CCWWGG	2 cut(s)	95, 140
Bst2UI	CCWGG	3 cut(s)	75, 117, 204
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	2 cut(s)	182, 222
BstF5I	GGATG	1 cut(s)	375
BstKTI	GATC	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	3 cut(s)	75, 117, 204
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	3 cut(s)	73, 115, 202
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	386
BsuRI	GGCC	3 cut(s)	73, 82, 202
BtsCI	GGATG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	372
CaiI	CAGNNNCTG	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	59, 161
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	2 cut(s)	336, 359
CviJI	RGCY	9 cut(s)	32, 73, 82, 202, 215, 253, 284, 364, 372
CviKI_1	RGCY	9 cut(s)	32, 73, 82, 202, 215, 253, 284, 364, 372
CviQI	GTAC	1 cut(s)	390
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	182, 222
EarI	CTCTTC	2 cut(s)	182, 222
Eco130I	CCWWGG	2 cut(s)	95, 140
Eco147I	AGGCCT	1 cut(s)	73
Eco47I	GGWCC	2 cut(s)	59, 161
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	3 cut(s)	73, 115, 202
EcoT14I	CCWWGG	2 cut(s)	95, 140
EcoT22I	ATGCAT	2 cut(s)	315, 360
ErhI	CCWWGG	2 cut(s)	95, 140
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	2 cut(s)	339, 362
FaiI	YATR	4 cut(s)	315, 317, 337, 360
FalI	AAGNNNNNCTT	2 cut(s)	256, 288
FaqI	GGGAC	2 cut(s)	72, 148
FatI	CATG	2 cut(s)	335, 358
FokI	GGATG	1 cut(s)	362
FspBI	CTAG	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	73, 82, 202
Hin1II	CATG	2 cut(s)	339, 362
HinfI	GANTC	1 cut(s)	226
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	269, 293
Hpy188I	TCNGA	3 cut(s)	108, 240, 281
Hpy188III	TCNNGA	3 cut(s)	66, 164, 221
Hpy8I	GTNNAC	2 cut(s)	269, 293
HpyAV	CCTTC	4 cut(s)	49, 63, 72, 72
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	5 cut(s)	269, 313, 327, 351, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	2 cut(s)	339, 362
Kzo9I	GATC	1 cut(s)	119
LguI	GCTCTTC	1 cut(s)	222
LweI	GCATC	2 cut(s)	300, 345
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	2 cut(s)	194, 230
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MboII	GAAGA	3 cut(s)	196, 199, 209
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	3 cut(s)	21, 50, 430
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	4 cut(s)	78, 120, 138, 174
Mph1103I	ATGCAT	2 cut(s)	315, 360
MseI	TTAA	2 cut(s)	11, 433
MslI	CAYNNNNRTG	1 cut(s)	340
MspR9I	CCNGG	3 cut(s)	75, 117, 204
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	3 cut(s)	75, 117, 204
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeII	GATC	1 cut(s)	119
NlaIII	CATG	2 cut(s)	339, 362
NlaIV	GGNNCC	1 cut(s)	60
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	230
NsiI	ATGCAT	2 cut(s)	315, 360
NspI	RCATGY	1 cut(s)	339
PceI	AGGCCT	1 cut(s)	73
PciI	ACATGT	1 cut(s)	335
PciSI	GCTCTTC	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	226
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	226
PfoI	TCCNGGA	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	59
PscI	ACATGT	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	3 cut(s)	73, 115, 202
PspGI	CCWGG	3 cut(s)	73, 115, 202
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	59, 161
PspPPI	RGGWCCY	1 cut(s)	59
PstNI	CAGNNNCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	11, 433
Sau3AI	GATC	1 cut(s)	119
Sau96I	GGNCC	2 cut(s)	59, 161
ScrFI	CCNGG	3 cut(s)	75, 117, 204
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	9 cut(s)	64, 142, 163, 196, 217, 255, 274, 286, 415
SfaNI	GCATC	2 cut(s)	300, 345
SfcI	CTRYAG	1 cut(s)	210
SfiI	GGCCNNNNNGGCC	1 cut(s)	79
SinI	GGWCC	2 cut(s)	59, 161
SmiMI	CAYNNNNRTG	1 cut(s)	340
Sse9I	AATT	3 cut(s)	21, 50, 430
SseBI	AGGCCT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	3 cut(s)	73, 115, 202
StyI	CCWWGG	2 cut(s)	95, 140
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	1 cut(s)	196
TasI	AATT	3 cut(s)	21, 50, 430
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	11, 433
Tru9I	TTAA	2 cut(s)	11, 433
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	265
TspRI	CASTG	1 cut(s)	372
VneI	GTGCAC	1 cut(s)	267
VpaK11BI	GGWCC	2 cut(s)	59, 161
XceI	RCATGY	1 cut(s)	339
XmaJI	CCTAGG	1 cut(s)	140
XspI	CTAG	1 cut(s)	141
Zsp2I	ATGCAT	2 cut(s)	315, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.