Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Forward (+)

38054820 .. 38057202

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0268200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCCTCGAGGAACACTTGAAGTTGTTCTTGTTGATGCCAGAGGGCTCGACAACAATGATTTTCTCGCTAAAATATCCCCCTATGCTGTTTTAACTGTGAAGACCCAAGAGAAGAAAAGCACTGTGCTTACAGGGAAAGGATCTAACCCAGAATGGAATGAATCCTTTCTGTTCACAATCTCGGACGATGAAGTCAAGGAACTCCATCTGACAATAATGGACAAAGATAACTTCAGTGCCGATGATTTTGTTGGAGAAGCAACCATTCCTTTACTGCCAGCTTTTGTCAAAGGAACTGTTAACCCAACTACATACAACATTGTCAATAAGGAGAAGGAATTTCATGGTGGGGTTAAACTTGGACTCACTTTCACTCCTGAGTCTGGTTTTGAGCCCGGGAGAAGCGATTTTGAATCTGGAGAACATGGTGAGGAGGGCTCTGGTGGATGGAAACAATCATCTCATGGGGAGGACATACCGGGTGGATGGAAAGAACAACCTTCTGGGGAGGTGGGACTAGGTGGAAGGAATGAACCACCTTATGGGGAGGAGAGACCACCTTACGGTGAGGAGAGACCGCCTTATGGGGCGGAGAGACCACCTTTTGGGGAGGAGAGACCACCTTACAGGCAGGAGGGACCACCTTTCGGAGAGGAGAGGCCGCCTTACAGGCAGGAGAGGCCACCTTATGGGGAGGAGAGGCCACCTTATGGGGAAGAGAGACCACCTTACGGGGAGGAGAGGCCACCTTTCGAGGAGGAGAGACATGGTGGAAGGAATGAACCACCTTATGGGGAAGAGAGACCACCTTACGGGGAGGAGAGGCCACCTTTCAGGGAGGAGAGACATGGTGGAAGGAATGAACCACCTTATGGGGAGGAGAGACCGGGTGGATGGAAACACTCCTCTTTCGACGAGGAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

308

Amino Acids

34.71

Weight (kDa)

4.77

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	4 - 105	2.8e-22	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	191
AbsI	CCTCGAGG	1 cut(s)	6
AccB7I	CCANNNNNTGG	6 cut(s)	542, 605, 689, 710, 791, 872
AciI	CCGC	3 cut(s)	578, 590, 662
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	20, 413
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw26I	GTCTC	9 cut(s)	547, 568, 589, 610, 715, 757, 796, 838, 877
AlwI	GGATC	1 cut(s)	148
Ama87I	CYCGRG	2 cut(s)	6, 395
AoxI	GGCC	5 cut(s)	659, 680, 701, 743, 824
ApoI	RAATTY	1 cut(s)	338
Asp700I	GAANNNNTTC	2 cut(s)	24, 165
AspS9I	GGNCC	1 cut(s)	638
AsuC2I	CCSGG	4 cut(s)	396, 397, 480, 888
AsuHPI	GGTGA	2 cut(s)	440, 578
AvaI	CYCGRG	2 cut(s)	6, 395
AvaII	GGWCC	1 cut(s)	638
BanII	GRGCYC	3 cut(s)	48, 396, 440
BbsI	GAAGAC	1 cut(s)	107
BccI	CCATC	4 cut(s)	213, 441, 480, 888
BcnI	CCSGG	4 cut(s)	396, 397, 480, 888
BcoDI	GTCTC	9 cut(s)	547, 568, 589, 610, 715, 757, 796, 838, 877
BfaI	CTAG	1 cut(s)	518
BglI	GCCNNNNNGGC	1 cut(s)	670
BisI	GCNGC	1 cut(s)	662
BlsI	GCNGC	1 cut(s)	663
Bme1390I	CCNGG	4 cut(s)	396, 397, 480, 888
Bme18I	GGWCC	1 cut(s)	638
BmeT110I	CYCGRG	2 cut(s)	6, 395
BmgT120I	GGNCC	1 cut(s)	638
BmiI	GGNNCC	1 cut(s)	639
BmrFI	CCNGG	4 cut(s)	396, 397, 480, 888
BmsI	GCATC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	107
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
BpmI	CTGGAG	1 cut(s)	438
BpuMI	CCSGG	4 cut(s)	396, 397, 480, 888
BsaI	GGTCTC	7 cut(s)	547, 568, 589, 610, 715, 796, 877
BsaJI	CCNNGG	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	358, 388
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	3 cut(s)	452, 491, 899
BseMII	CTCAG	1 cut(s)	369
BshFI	GGCC	5 cut(s)	661, 682, 703, 745, 826
BsiHKCI	CYCGRG	2 cut(s)	6, 395
BsiSI	CCGG	3 cut(s)	396, 479, 887
BslFI	GGGAC	2 cut(s)	528, 651
BsmAI	GTCTC	9 cut(s)	547, 568, 589, 610, 715, 757, 796, 838, 877
BsmFI	GGGAC	2 cut(s)	528, 651
BsnI	GGCC	5 cut(s)	661, 682, 703, 745, 826
Bso31I	GGTCTC	7 cut(s)	547, 568, 589, 610, 715, 796, 877
BsoBI	CYCGRG	2 cut(s)	6, 395
Bsp1286I	GDGCHC	3 cut(s)	48, 396, 440
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	3 cut(s)	578, 590, 662
BspANI	GGCC	5 cut(s)	661, 682, 703, 745, 826
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	639
BspPI	GGATC	1 cut(s)	148
BspTNI	GGTCTC	7 cut(s)	547, 568, 589, 610, 715, 796, 877
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	1 cut(s)	140
Bst4CI	ACNGT	4 cut(s)	97, 124, 298, 566
Bst6I	CTCTTC	2 cut(s)	711, 792
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	452, 491, 899
BstKTI	GATC	1 cut(s)	143
BstMAI	GTCTC	9 cut(s)	547, 568, 589, 610, 715, 757, 796, 838, 877
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	2 cut(s)	670, 679
BstSCI	CCNGG	4 cut(s)	394, 395, 478, 886
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	5 cut(s)	661, 682, 703, 745, 826
BtsCI	GGATG	3 cut(s)	452, 491, 899
BtsIMutI	CAGTG	2 cut(s)	120, 241
Cac8I	GCNNGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	638
Cfr9I	CCCGGG	1 cut(s)	395
CviAII	CATG	5 cut(s)	344, 425, 464, 767, 848
CviJI	RGCY	9 cut(s)	46, 281, 394, 438, 661, 682, 703, 745, 826
CviKI_1	RGCY	9 cut(s)	46, 281, 394, 438, 661, 682, 703, 745, 826
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
DrdI	GACNNNNNNGTC	1 cut(s)	191
DseDI	GACNNNNNNGTC	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	711, 792
EarI	CTCTTC	2 cut(s)	711, 792
EciI	GGCGGA	1 cut(s)	605
Eco24I	GRGCYC	3 cut(s)	48, 396, 440
Eco31I	GGTCTC	7 cut(s)	547, 568, 589, 610, 715, 796, 877
Eco47I	GGWCC	1 cut(s)	638
Eco57I	CTGAAG	1 cut(s)	217
Eco88I	CYCGRG	2 cut(s)	6, 395
EcoT38I	GRGCYC	3 cut(s)	48, 396, 440
FaeI	CATG	5 cut(s)	347, 428, 467, 770, 851
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	2 cut(s)	528, 651
FatI	CATG	5 cut(s)	343, 424, 463, 766, 847
Fnu4HI	GCNGC	1 cut(s)	662
FokI	GGATG	3 cut(s)	459, 498, 906
FriOI	GRGCYC	3 cut(s)	48, 396, 440
Fsp4HI	GCNGC	1 cut(s)	662
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	1 cut(s)	662
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	5 cut(s)	661, 682, 703, 745, 826
HapII	CCGG	3 cut(s)	396, 479, 887
Hin1II	CATG	5 cut(s)	347, 428, 467, 770, 851
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	4 cut(s)	161, 363, 380, 413
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	3 cut(s)	396, 479, 887
HphI	GGTGA	2 cut(s)	440, 578
Hpy166II	GTNNAC	2 cut(s)	174, 301
Hpy188I	TCNGA	3 cut(s)	184, 210, 650
Hpy188III	TCNNGA	2 cut(s)	377, 417
Hpy8I	GTNNAC	2 cut(s)	174, 301
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	5 cut(s)	328, 510, 519, 768, 849
HpyCH4III	ACNGT	4 cut(s)	97, 124, 298, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	670, 679
HpyF3I	CTNAG	1 cut(s)	378
Hsp92II	CATG	5 cut(s)	347, 428, 467, 770, 851
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	140
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	518
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	4 cut(s)	112, 124, 728, 809
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	3 cut(s)	48, 396, 440
MluCI	AATT	1 cut(s)	338
MlyI	GAGTC	2 cut(s)	357, 389
MmeI	TCCRAC	1 cut(s)	232
MroXI	GAANNNNTTC	2 cut(s)	24, 165
MseI	TTAA	3 cut(s)	92, 300, 354
MspI	CCGG	3 cut(s)	396, 479, 887
MspR9I	CCNGG	4 cut(s)	396, 397, 480, 888
MwoI	GCNNNNNNNGC	2 cut(s)	670, 679
NciI	CCSGG	4 cut(s)	396, 397, 480, 888
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	5 cut(s)	347, 428, 467, 770, 851
NlaIV	GGNNCC	1 cut(s)	639
PaeR7I	CTCGAG	1 cut(s)	6
PdmI	GAANNNNTTC	2 cut(s)	24, 165
PfeI	GAWTC	2 cut(s)	161, 413
PflMI	CCANNNNNTGG	6 cut(s)	542, 605, 689, 710, 791, 872
PkrI	GCNGC	1 cut(s)	663
PleI	GAGTC	2 cut(s)	357, 388
PpsI	GAGTC	2 cut(s)	357, 388
PspN4I	GGNNCC	1 cut(s)	639
PspPI	GGNCC	1 cut(s)	638
PspXI	VCTCGAGB	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	92, 300, 354
SatI	GCNGC	1 cut(s)	662
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	1 cut(s)	638
SchI	GAGTC	2 cut(s)	357, 389
ScrFI	CCNGG	4 cut(s)	396, 397, 480, 888
SduI	GDGCHC	3 cut(s)	48, 396, 440
SfaNI	GCATC	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	638
SlaI	CTCGAG	1 cut(s)	6
SmaI	CCCGGG	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	1 cut(s)	338
SsiI	CCGC	3 cut(s)	578, 590, 662
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	4 cut(s)	394, 395, 478, 886
TaaI	ACNGT	4 cut(s)	97, 124, 298, 566
TaqI	TCGA	4 cut(s)	7, 48, 753, 912
TasI	AATT	1 cut(s)	338
TauI	GCSGC	1 cut(s)	664
TfiI	GAWTC	2 cut(s)	161, 413
Tru1I	TTAA	3 cut(s)	92, 300, 354
Tru9I	TTAA	3 cut(s)	92, 300, 354
TscAI	CASTG	2 cut(s)	127, 241
TspDTI	ATGAA	6 cut(s)	174, 204, 332, 546, 795, 876
TspMI	CCCGGG	1 cut(s)	395
TspRI	CASTG	2 cut(s)	127, 241
Van91I	CCANNNNNTGG	6 cut(s)	542, 605, 689, 710, 791, 872
VpaK11BI	GGWCC	1 cut(s)	638
XapI	RAATTY	1 cut(s)	338
XhoI	CTCGAG	1 cut(s)	6
XmaI	CCCGGG	1 cut(s)	395
XmnI	GAANNNNTTC	2 cut(s)	24, 165
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.