Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Forward (+)

17186829 .. 17190727

Gene Structure 3899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCGAGGGTCAAGCACACAGCTGCCAGGAAAGACAGGATTAAAACCGCTCGCCGGCAACCAGGAGGCTCGCCGGCGCCGGCGCCTTCACCGGGACCTTCTAGAAGGCCTGGAAGGCCGAGGAAAAGTCCAAGGAAAAGTCCGACAAGTCCAGGATCACAGAGGCAGGGGACACCTAGAAGGAATGCCACAACAGGTCCAGAAGCACAGACACAGAGGAAGAAGAGACGTAACAGGCCAGGAACTGTAGCTCTTCGAGAGATTCGTCACTTTCAGAAGTCGGTGAAGCTCGTTATCCCAAGTGCACCTTTCATTAGAGCTGTAAGAGAGATCACCGGTACCTTGTCTAATGATGTTACGCGTTGGACTGCTGAAGCTTTACAGTGTATTCATGAGGCAGCAGAGGATTATCTTGTTCATTTGTTTGAAGATTCAATGCTCTGTGCAATTCATGCAAAGCGTGTTACTCTTATGAGGAAGGATTTTGAGCTGGCTCGTCGTCTTGGAGGGATAGGGAGGCGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

175

Amino Acids

19.68

Weight (kDa)

11.82

Isoelectric Point (pI)

75.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	80 - 168	2.6e-26	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	3 cut(s)	76, 82, 338
AccBSI	CCGCTC	1 cut(s)	50
AccII	CGCG	1 cut(s)	361
AciI	CCGC	2 cut(s)	48, 520
AclWI	GGATC	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	393
AcyI	GRCGYC	2 cut(s)	77, 83
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	2 cut(s)	54, 92
AflIII	ACRYGT	1 cut(s)	359
AgeI	ACCGGT	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	428, 435
AjnI	CCWGG	5 cut(s)	26, 61, 109, 151, 238
AluBI	AGCT	6 cut(s)	23, 251, 289, 320, 377, 490
AluI	AGCT	6 cut(s)	23, 251, 289, 320, 377, 490
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	220
Alw44I	GTGCAC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	163
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	3 cut(s)	107, 116, 236
ApaLI	GTGCAC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	23, 398
AsiGI	ACCGGT	1 cut(s)	335
Asp718I	GGTACC	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	79, 85
AspS9I	GGNCC	2 cut(s)	95, 197
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	81, 295, 325
AvaII	GGWCC	2 cut(s)	95, 197
BaeGI	GKGCMC	1 cut(s)	307
BanI	GGYRCC	3 cut(s)	76, 82, 338
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	10, 410
BciT130I	CCWGG	5 cut(s)	28, 63, 111, 153, 240
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	102, 177
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	2 cut(s)	80, 86
BglI	GCCNNNNNGGC	1 cut(s)	115
BisI	GCNGC	2 cut(s)	24, 399
BlsI	GCNGC	2 cut(s)	25, 400
Bme1390I	CCNGG	6 cut(s)	28, 63, 93, 111, 153, 240
Bme18I	GGWCC	2 cut(s)	95, 197
BmgT120I	GGNCC	2 cut(s)	95, 197
BmiI	GGNNCC	4 cut(s)	78, 84, 96, 340
BmrFI	CCNGG	6 cut(s)	28, 63, 93, 111, 153, 240
BpuMI	CCSGG	1 cut(s)	93
BsaHI	GRCGYC	2 cut(s)	77, 83
BsaJI	CCNNGG	2 cut(s)	119, 131
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 92
Bse118I	RCCGGY	4 cut(s)	54, 73, 79, 335
BseBI	CCWGG	5 cut(s)	28, 63, 111, 153, 240
BseDI	CCNNGG	2 cut(s)	119, 131
BseLI	CCNNNNNNNGG	2 cut(s)	54, 92
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	10, 410
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	3 cut(s)	109, 118, 238
BshNI	GGYRCC	3 cut(s)	76, 82, 338
BshTI	ACCGGT	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	5 cut(s)	55, 74, 80, 92, 336
BslFI	GGGAC	2 cut(s)	108, 184
BslI	CCNNNNNNNGG	2 cut(s)	54, 92
BsmAI	GTCTC	1 cut(s)	220
BsmBI	CGTCTC	1 cut(s)	220
BsmFI	GGGAC	2 cut(s)	108, 184
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	3 cut(s)	109, 118, 238
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	155, 330
BspACI	CCGC	2 cut(s)	48, 520
BspANI	GGCC	3 cut(s)	109, 118, 238
BspFNI	CGCG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	4 cut(s)	78, 84, 96, 340
BspPI	GGATC	1 cut(s)	163
BspQI	GCTCTTC	1 cut(s)	258
BspT107I	GGYRCC	3 cut(s)	76, 82, 338
BsrBI	CCGCTC	1 cut(s)	50
BsrFI	RCCGGY	4 cut(s)	54, 73, 79, 335
BssAI	RCCGGY	4 cut(s)	54, 73, 79, 335
BssECI	CCNNGG	2 cut(s)	119, 131
BssMI	GATC	2 cut(s)	155, 330
BssNI	GRCGYC	2 cut(s)	77, 83
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	5 cut(s)	28, 63, 111, 153, 240
Bst4CI	ACNGT	2 cut(s)	247, 384
Bst6I	CTCTTC	2 cut(s)	218, 258
BstACI	GRCGYC	2 cut(s)	77, 83
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	6 cut(s)	52, 56, 71, 75, 81, 492
BstFNI	CGCG	1 cut(s)	361
BstH2I	RGCGCY	2 cut(s)	80, 86
BstHHI	GCGC	2 cut(s)	79, 85
BstKTI	GATC	2 cut(s)	158, 333
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	155, 330
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 452
BstNI	CCWGG	5 cut(s)	28, 63, 111, 153, 240
BstSCI	CCNGG	6 cut(s)	26, 61, 91, 109, 151, 238
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	307
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	2 cut(s)	10, 410
BsuRI	GGCC	3 cut(s)	109, 118, 238
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	6 cut(s)	52, 56, 71, 75, 81, 492
CaiI	CAGNNNCTG	1 cut(s)	245
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	2 cut(s)	79, 85
Cfr10I	RCCGGY	4 cut(s)	54, 73, 79, 335
Cfr13I	GGNCC	2 cut(s)	95, 197
Csp6I	GTAC	1 cut(s)	339
CspAI	ACCGGT	1 cut(s)	335
CviAII	CATG	2 cut(s)	392, 452
CviQI	GTAC	1 cut(s)	339
DinI	GGCGCC	2 cut(s)	78, 84
DpnI	GATC	2 cut(s)	157, 332
DpnII	GATC	2 cut(s)	155, 330
Eam1104I	CTCTTC	2 cut(s)	218, 258
EarI	CTCTTC	2 cut(s)	218, 258
Eco130I	CCWWGG	1 cut(s)	131
Eco147I	AGGCCT	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	95, 197
Eco57I	CTGAAG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRII	CCWGG	5 cut(s)	26, 61, 109, 151, 238
EcoT14I	CCWWGG	1 cut(s)	131
EgeI	GGCGCC	2 cut(s)	78, 84
EheI	GGCGCC	2 cut(s)	78, 84
ErhI	CCWWGG	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	2 cut(s)	395, 455
FaiI	YATR	3 cut(s)	393, 453, 473
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	2 cut(s)	108, 184
FatI	CATG	2 cut(s)	391, 451
Fnu4HI	GCNGC	2 cut(s)	24, 399
Fsp4HI	GCNGC	2 cut(s)	24, 399
FspBI	CTAG	2 cut(s)	102, 177
GlaI	GCGC	2 cut(s)	78, 84
GluI	GCNGC	2 cut(s)	24, 399
HaeII	RGCGCY	2 cut(s)	80, 86
HaeIII	GGCC	3 cut(s)	109, 118, 238
HapII	CCGG	5 cut(s)	55, 74, 80, 92, 336
HhaI	GCGC	2 cut(s)	79, 85
Hin1I	GRCGYC	2 cut(s)	77, 83
Hin1II	CATG	2 cut(s)	395, 455
Hin6I	GCGC	2 cut(s)	77, 83
HinP1I	GCGC	2 cut(s)	77, 83
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	2 cut(s)	262, 431
HpaII	CCGG	5 cut(s)	55, 74, 80, 92, 336
HphI	GGTGA	3 cut(s)	81, 295, 325
Hpy166II	GTNNAC	1 cut(s)	305
Hpy188I	TCNGA	2 cut(s)	144, 276
Hpy188III	TCNNGA	4 cut(s)	102, 200, 257, 392
Hpy8I	GTNNAC	1 cut(s)	305
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	6 cut(s)	96, 99, 108, 108, 174, 472
HpyCH4III	ACNGT	2 cut(s)	247, 384
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	305, 446, 455
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 452
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	2 cut(s)	77, 83
Hsp92II	CATG	2 cut(s)	395, 455
HspAI	GCGC	2 cut(s)	77, 83
KasI	GGCGCC	2 cut(s)	76, 82
KpnI	GGTACC	1 cut(s)	342
KroI	GCCGGC	3 cut(s)	54, 73, 79
KroNI	GCCGGC	3 cut(s)	56, 75, 81
Kzo9I	GATC	2 cut(s)	155, 330
LguI	GCTCTTC	1 cut(s)	258
Lsp1109I	GCAGC	2 cut(s)	10, 410
MaeI	CTAG	2 cut(s)	102, 177
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	4 cut(s)	230, 266, 355, 463
MalI	GATC	2 cut(s)	157, 332
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	2 cut(s)	155, 330
MboII	GAAGA	4 cut(s)	232, 235, 245, 440
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	1 cut(s)	447
MluI	ACGCGT	1 cut(s)	359
Mly113I	GGCGCC	2 cut(s)	77, 83
MmeI	TCCRAC	2 cut(s)	167, 344
MnlI	CCTC	9 cut(s)	59, 114, 156, 210, 388, 397, 468, 500, 510
MreI	CGCCGGCG	2 cut(s)	73, 79
MroNI	GCCGGC	3 cut(s)	54, 73, 79
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	5 cut(s)	55, 74, 80, 92, 336
MspR9I	CCNGG	6 cut(s)	28, 63, 93, 111, 153, 240
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	5 cut(s)	28, 63, 111, 153, 240
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	115, 452
NaeI	GCCGGC	3 cut(s)	56, 75, 81
NarI	GGCGCC	2 cut(s)	77, 83
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	155, 330
NgoMIV	GCCGGC	3 cut(s)	54, 73, 79
NlaIII	CATG	2 cut(s)	395, 455
NlaIV	GGNNCC	4 cut(s)	78, 84, 96, 340
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	266
PagI	TCATGA	1 cut(s)	391
PceI	AGGCCT	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PctI	GAATGC	1 cut(s)	190
PdiI	GCCGGC	3 cut(s)	56, 75, 81
PfeI	GAWTC	2 cut(s)	262, 431
PfoI	TCCNGGA	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	25, 400
PluTI	GGCGCC	2 cut(s)	80, 86
PpuMI	RGGWCCY	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	5 cut(s)	26, 61, 109, 151, 238
PspGI	CCWGG	5 cut(s)	26, 61, 109, 151, 238
PspN4I	GGNNCC	4 cut(s)	78, 84, 96, 340
PspPI	GGNCC	2 cut(s)	95, 197
PspPPI	RGGWCCY	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	2 cut(s)	24, 399
Sau3AI	GATC	2 cut(s)	155, 330
Sau96I	GGNCC	2 cut(s)	95, 197
ScrFI	CCNGG	6 cut(s)	28, 63, 93, 111, 153, 240
SduI	GDGCHC	1 cut(s)	307
SfcI	CTRYAG	1 cut(s)	246
SfiI	GGCCNNNNNGGCC	1 cut(s)	115
SfoI	GGCGCC	2 cut(s)	78, 84
SgrAI	CRCCGGYG	2 cut(s)	73, 79
SinI	GGWCC	2 cut(s)	95, 197
Sse9I	AATT	1 cut(s)	447
SseBI	AGGCCT	1 cut(s)	109
SsiI	CCGC	2 cut(s)	48, 520
SspDI	GGCGCC	2 cut(s)	76, 82
SspMI	CTAG	2 cut(s)	102, 177
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	6 cut(s)	26, 61, 91, 109, 151, 238
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	247, 384
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	256
TasI	AATT	1 cut(s)	447
TfiI	GAWTC	2 cut(s)	262, 431
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TscAI	CASTG	1 cut(s)	389
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	2 cut(s)	23, 398
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	4 cut(s)	301, 380, 407, 440
TspRI	CASTG	1 cut(s)	389
VneI	GTGCAC	1 cut(s)	303
VpaK11BI	GGWCC	2 cut(s)	95, 197
XbaI	TCTAGA	1 cut(s)	101
XspI	CTAG	2 cut(s)	102, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.