Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Reverse (-)

37739290 .. 37743508

Gene Structure 4219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG248500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCGAGGGTCAAGCACACAGCTGCCAGGAAAGACCGGATTAAAACCGCTCGCCGGCAACCAGGAGGCTCGCCGGCGCCGGCGCCGTCACCGGGACCTTCTGGAAGGCCGAGGAAAAGTCCAAGGAAAAGTCCGACAAGTCCAGGATCACAGAGGCAGGGGACACCTAGGAGGAATGCCACAACAGGTCCAGAAGCACAGACACAGAGGAAGAAGAGACGTAACAGGCCAGGAACTGTAGCTCTTCGGGAGATTCGTCACTTTCAGAAGTCGGTGAAGCTGGTTATCCCAAGTGCACCTTTCATCAGAGCTGTAAGTTCACTAACTCACTTATTGATGCATATAAGCACTTGCACCCACACATGTAAGTGCTTTTGCATGATGCATGAGCCAGTGAGCCACATCCAGCAAGATGTTACAGATGGAAAAGAAATGTTAGGTAGTGTTAGTGATAAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

153

Amino Acids

16.86

Weight (kDa)

11.62

Isoelectric Point (pI)

79.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	76, 82
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	154
AcyI	GRCGYC	2 cut(s)	77, 83
AfiI	CCNNNNNNNGG	2 cut(s)	54, 92
AflIII	ACRYGT	1 cut(s)	362
AjnI	CCWGG	4 cut(s)	26, 61, 142, 229
AluBI	AGCT	4 cut(s)	23, 242, 280, 311
AluI	AGCT	4 cut(s)	23, 242, 280, 311
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	211
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	154
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	2 cut(s)	107, 227
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	23
AspA2I	CCTAGG	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	79, 85
AspS9I	GGNCC	2 cut(s)	95, 188
AsuC2I	CCSGG	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	81, 286
AvaII	GGWCC	2 cut(s)	95, 188
AvrII	CCTAGG	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	2 cut(s)	76, 82
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	1 cut(s)	70
BciT130I	CCWGG	4 cut(s)	28, 63, 144, 231
BcnI	CCSGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	2 cut(s)	80, 86
BisI	GCNGC	1 cut(s)	24
BlnI	CCTAGG	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	5 cut(s)	28, 63, 93, 144, 231
Bme18I	GGWCC	2 cut(s)	95, 188
BmgT120I	GGNCC	2 cut(s)	95, 188
BmiI	GGNNCC	3 cut(s)	78, 84, 96
BmrFI	CCNGG	5 cut(s)	28, 63, 93, 144, 231
BmsI	GCATC	2 cut(s)	327, 372
BpuMI	CCSGG	1 cut(s)	93
BsaHI	GRCGYC	2 cut(s)	77, 83
BsaJI	CCNNGG	3 cut(s)	110, 122, 167
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 92
Bse118I	RCCGGY	3 cut(s)	54, 73, 79
Bse1I	ACTGG	1 cut(s)	392
BseBI	CCWGG	4 cut(s)	28, 63, 144, 231
BseDI	CCNNGG	3 cut(s)	110, 122, 167
BseGI	GGATG	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	54, 92
BseNI	ACTGG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	10
BshFI	GGCC	2 cut(s)	109, 229
BshNI	GGYRCC	2 cut(s)	76, 82
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	5 cut(s)	37, 55, 74, 80, 92
BslFI	GGGAC	2 cut(s)	108, 175
BslI	CCNNNNNNNGG	2 cut(s)	54, 92
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	108, 175
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	109, 229
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	146
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	109, 229
BspLI	GGNNCC	3 cut(s)	78, 84, 96
BspPI	GGATC	1 cut(s)	154
BspQI	GCTCTTC	1 cut(s)	249
BspT107I	GGYRCC	2 cut(s)	76, 82
BsrBI	CCGCTC	1 cut(s)	50
BsrFI	RCCGGY	3 cut(s)	54, 73, 79
BsrI	ACTGG	1 cut(s)	392
BssAI	RCCGGY	3 cut(s)	54, 73, 79
BssECI	CCNNGG	3 cut(s)	110, 122, 167
BssMI	GATC	1 cut(s)	146
BssNI	GRCGYC	2 cut(s)	77, 83
BssT1I	CCWWGG	2 cut(s)	122, 167
Bst2UI	CCWGG	4 cut(s)	28, 63, 144, 231
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	209, 249
BstACI	GRCGYC	2 cut(s)	77, 83
BstC8I	GCNNGC	5 cut(s)	52, 56, 71, 75, 81
BstF5I	GGATG	1 cut(s)	402
BstH2I	RGCGCY	2 cut(s)	80, 86
BstHHI	GCGC	2 cut(s)	79, 85
BstKTI	GATC	1 cut(s)	149
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	146
BstNI	CCWGG	4 cut(s)	28, 63, 144, 231
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	5 cut(s)	26, 61, 91, 142, 229
BstSFI	CTRYAG	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	109, 229
BtsCI	GGATG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	399
Cac8I	GCNNGC	5 cut(s)	52, 56, 71, 75, 81
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	2 cut(s)	79, 85
Cfr10I	RCCGGY	3 cut(s)	54, 73, 79
Cfr13I	GGNCC	2 cut(s)	95, 188
CviAII	CATG	3 cut(s)	363, 379, 386
CviJI	RGCY	9 cut(s)	23, 69, 109, 229, 242, 280, 311, 391, 399
CviKI_1	RGCY	9 cut(s)	23, 69, 109, 229, 242, 280, 311, 391, 399
DinI	GGCGCC	2 cut(s)	78, 84
DpnI	GATC	1 cut(s)	148
DpnII	GATC	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	209, 249
EarI	CTCTTC	2 cut(s)	209, 249
Eco130I	CCWWGG	2 cut(s)	122, 167
Eco47I	GGWCC	2 cut(s)	95, 188
EcoO109I	RGGNCCY	1 cut(s)	95
EcoRII	CCWGG	4 cut(s)	26, 61, 142, 229
EcoT14I	CCWWGG	2 cut(s)	122, 167
EcoT22I	ATGCAT	2 cut(s)	342, 387
EgeI	GGCGCC	2 cut(s)	78, 84
EheI	GGCGCC	2 cut(s)	78, 84
ErhI	CCWWGG	2 cut(s)	122, 167
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	3 cut(s)	366, 382, 389
FaiI	YATR	5 cut(s)	342, 344, 364, 380, 387
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FaqI	GGGAC	2 cut(s)	108, 175
FatI	CATG	3 cut(s)	362, 378, 385
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	2 cut(s)	78, 84
GluI	GCNGC	1 cut(s)	24
HaeII	RGCGCY	2 cut(s)	80, 86
HaeIII	GGCC	2 cut(s)	109, 229
HapII	CCGG	5 cut(s)	37, 55, 74, 80, 92
HhaI	GCGC	2 cut(s)	79, 85
Hin1I	GRCGYC	2 cut(s)	77, 83
Hin1II	CATG	3 cut(s)	366, 382, 389
Hin6I	GCGC	2 cut(s)	77, 83
HinP1I	GCGC	2 cut(s)	77, 83
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	5 cut(s)	37, 55, 74, 80, 92
HphI	GGTGA	2 cut(s)	81, 286
Hpy166II	GTNNAC	2 cut(s)	296, 320
Hpy188I	TCNGA	3 cut(s)	135, 267, 308
Hpy188III	TCNNGA	3 cut(s)	102, 191, 248
Hpy8I	GTNNAC	2 cut(s)	296, 320
HpyAV	CCTTC	2 cut(s)	99, 108
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	5 cut(s)	296, 340, 354, 378, 385
HpySE526I	ACGT	1 cut(s)	220
Hsp92I	GRCGYC	2 cut(s)	77, 83
Hsp92II	CATG	3 cut(s)	366, 382, 389
HspAI	GCGC	2 cut(s)	77, 83
KasI	GGCGCC	2 cut(s)	76, 82
KroI	GCCGGC	3 cut(s)	54, 73, 79
KroNI	GCCGGC	3 cut(s)	56, 75, 81
Kzo9I	GATC	1 cut(s)	146
LguI	GCTCTTC	1 cut(s)	249
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	2 cut(s)	327, 372
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	4 cut(s)	87, 221, 257, 415
MalI	GATC	1 cut(s)	148
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	1 cut(s)	146
MboII	GAAGA	3 cut(s)	223, 226, 236
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	1 cut(s)	457
Mly113I	GGCGCC	2 cut(s)	77, 83
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	5 cut(s)	59, 105, 147, 165, 201
Mph1103I	ATGCAT	2 cut(s)	342, 387
MreI	CGCCGGCG	2 cut(s)	73, 79
MroNI	GCCGGC	3 cut(s)	54, 73, 79
MseI	TTAA	2 cut(s)	42, 460
MslI	CAYNNNNRTG	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	5 cut(s)	37, 55, 74, 80, 92
MspR9I	CCNGG	5 cut(s)	28, 63, 93, 144, 231
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	4 cut(s)	28, 63, 144, 231
NaeI	GCCGGC	3 cut(s)	56, 75, 81
NarI	GGCGCC	2 cut(s)	77, 83
NciI	CCSGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	146
NgoMIV	GCCGGC	3 cut(s)	54, 73, 79
NlaIII	CATG	3 cut(s)	366, 382, 389
NlaIV	GGNNCC	3 cut(s)	78, 84, 96
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	87, 257
NsiI	ATGCAT	2 cut(s)	342, 387
NspI	RCATGY	1 cut(s)	366
PciI	ACATGT	1 cut(s)	362
PciSI	GCTCTTC	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PctI	GAATGC	1 cut(s)	181
PdiI	GCCGGC	3 cut(s)	56, 75, 81
PfeI	GAWTC	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	25
PluTI	GGCGCC	2 cut(s)	80, 86
PpuMI	RGGWCCY	1 cut(s)	95
PscI	ACATGT	1 cut(s)	362
Psp5II	RGGWCCY	1 cut(s)	95
Psp6I	CCWGG	4 cut(s)	26, 61, 142, 229
PspGI	CCWGG	4 cut(s)	26, 61, 142, 229
PspN4I	GGNNCC	3 cut(s)	78, 84, 96
PspPI	GGNCC	2 cut(s)	95, 188
PspPPI	RGGWCCY	1 cut(s)	95
PstNI	CAGNNNCTG	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	367
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	42, 460
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	146
Sau96I	GGNCC	2 cut(s)	95, 188
ScrFI	CCNGG	5 cut(s)	28, 63, 93, 144, 231
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	327, 372
SfcI	CTRYAG	1 cut(s)	237
SfoI	GGCGCC	2 cut(s)	78, 84
SgrAI	CRCCGGYG	2 cut(s)	73, 79
SinI	GGWCC	2 cut(s)	95, 188
SmiMI	CAYNNNNRTG	1 cut(s)	367
Sse9I	AATT	1 cut(s)	457
SsiI	CCGC	1 cut(s)	48
SspDI	GGCGCC	2 cut(s)	76, 82
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	5 cut(s)	26, 61, 91, 142, 229
StyI	CCWWGG	2 cut(s)	122, 167
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	223
TasI	AATT	1 cut(s)	457
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	2 cut(s)	42, 460
Tru9I	TTAA	2 cut(s)	42, 460
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	2 cut(s)	87, 257
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	2 cut(s)	87, 257
TspDTI	ATGAA	1 cut(s)	292
TspRI	CASTG	1 cut(s)	399
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	2 cut(s)	95, 188
XceI	RCATGY	1 cut(s)	366
XmaJI	CCTAGG	1 cut(s)	167
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	2 cut(s)	342, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.