Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006978

Physical Location & Seq

Genomic Coordinates Reverse (-)

21528732 .. 21531783

Gene Structure 3052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1147400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGAGAGTCAAACACACCGCCGGAAGAAAAGCTGCAGGCCGAAGCTCGGTGGCCTCACCTGCTCAACCGGAATCTTCTAGAAGCACGAGGAGGCCCGAGGCAAATCCGACAAGTCCAGGAACGCAGCAGAAGAAGCGGCGTTACAGGCCAGGAACAGTGGCTCTTCGGGAAATTCGTCACCTTCAGAAGACAGTTGAGATGATTATCCCAGCTGCTCCATTCATCAGAACTGTAAGAGAAATCACCAACTTTGTGTCTAGAGAGCCTAAGCGTTGGACGCCTGATGCTTTACTAGCAATTCAAGAGGCAGCAGAGGATTATGTCATTCAGTTGTTTGAAGATTCCAACCTCTGTGCAATTCATGCAAAGCGGGTCACTCTTATGAAGAAGGATTTTGAGTTGGCTCGTCGGATTGGAGGGAAGGGGAGGATCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000785 GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0007049 GO:0007059 GO:0008150 GO:0009566 GO:0009567 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031490 GO:0031491 GO:0031492 GO:0031497 GO:0032991 GO:0032993 GO:0034508 GO:0034622 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044703 GO:0044815 GO:0044877 GO:0045132 GO:0048285 GO:0051276 GO:0051301 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0065003 GO:0065004 GO:0071103 GO:0071824 GO:0071840 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko05034 ko05202 ko05322 map05034 map05202 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

147

Amino Acids

16.53

Weight (kDa)

11.06

Isoelectric Point (pI)

70.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	51 - 139	2.4e-26	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006978)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01370 AT1G01370 AT1G01370 AT1G01370
fragaria_vesca	FvH4_7g16180 FvH4_7g16180
malus_domestica	MD03G1162100.v1.1 MD07G1147400.v1.1
prunus_persica	Prupe.2G185400_v2.0.a1 Prupe.2G185400_v2.0.a1
pyrus_communis	pycom03g11510 pycom07g14650
rosa_chinensis	RchiOBHm_Chr1g0359181
rosa_laevigata	RLG00000002511 RLG00000027895
rosa_multiflora	Rmu_ssc0000135.1_g000016
rosa_roxburghii	Rroxscaffold_4G00297270
rosa_rugosa	Rorug01G0268000 Rorug01G0268100 Rorug01G0268200
rosa_samantha	Rh1AG282100 Rh1BG248500 Rh1CG266300 Rh1DG277500
rosa_wichuraiana	Rw1G025050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	1 cut(s)	70
AciI	CCGC	3 cut(s)	21, 139, 373
AclWI	GGATC	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	305, 341
AjnI	CCWGG	2 cut(s)	118, 151
AluBI	AGCT	3 cut(s)	35, 48, 215
AluI	AGCT	3 cut(s)	35, 48, 215
AlwI	GGATC	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	4 cut(s)	40, 54, 95, 149
ApeKI	GCWGC	4 cut(s)	35, 127, 215, 311
ApoI	RAATTY	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	3 cut(s)	51, 173, 238
AvaI	CYCGRG	1 cut(s)	98
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
BauI	CACGAG	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	4 cut(s)	22, 139, 202, 323
BciT130I	CCWGG	2 cut(s)	120, 153
BfaI	CTAG	3 cut(s)	81, 261, 296
BfmI	CTRYAG	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	5 cut(s)	36, 128, 140, 216, 312
BlsI	GCNGC	5 cut(s)	37, 129, 141, 217, 313
Bme1390I	CCNGG	2 cut(s)	120, 153
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	120, 153
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	120, 153
BseDI	CCNNGG	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	4 cut(s)	22, 139, 202, 323
BseYI	CCCAGC	1 cut(s)	211
BshFI	GGCC	4 cut(s)	42, 56, 97, 151
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	24, 71
BslI	CCNNNNNNNGG	1 cut(s)	49
BsnI	GGCC	4 cut(s)	42, 56, 97, 151
BsoBI	CYCGRG	1 cut(s)	98
Bsp143I	GATC	1 cut(s)	432
BspACI	CCGC	3 cut(s)	21, 139, 373
BspANI	GGCC	4 cut(s)	42, 56, 97, 151
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	440
BspQI	GCTCTTC	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	432
BssNI	GRCGYC	1 cut(s)	281
BssSI	CACGAG	1 cut(s)	88
Bst2BI	CACGAG	1 cut(s)	88
Bst2UI	CCWGG	2 cut(s)	120, 153
Bst4CI	ACNGT	3 cut(s)	160, 196, 235
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	435
BstMBI	GATC	1 cut(s)	432
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 136, 148, 280, 296, 365
BstNI	CCWGG	2 cut(s)	120, 153
BstSCI	CCNGG	2 cut(s)	118, 151
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	4 cut(s)	22, 139, 202, 323
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	432
BstYI	RGATCY	1 cut(s)	432
BsuRI	GGCC	4 cut(s)	42, 56, 97, 151
BtsIMutI	CAGTG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	96
CseI	GACGC	1 cut(s)	289
CviAII	CATG	1 cut(s)	365
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	1 cut(s)	434
DpnII	GATC	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	98
EcoRII	CCWGG	2 cut(s)	118, 151
FaeI	CATG	1 cut(s)	368
FaiI	YATR	3 cut(s)	324, 366, 386
FatI	CATG	1 cut(s)	364
FauI	CCCGC	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	36, 128, 140, 216, 312
Fsp4HI	GCNGC	5 cut(s)	36, 128, 140, 216, 312
FspBI	CTAG	3 cut(s)	81, 261, 296
GluI	GCNGC	5 cut(s)	36, 128, 140, 216, 312
GsaI	CCCAGC	1 cut(s)	215
HaeIII	GGCC	4 cut(s)	42, 56, 97, 151
HapII	CCGG	2 cut(s)	24, 71
HgaI	GACGC	1 cut(s)	289
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	368
HinfI	GANTC	3 cut(s)	9, 74, 344
HpaII	CCGG	2 cut(s)	24, 71
HphI	GGTGA	3 cut(s)	51, 173, 238
Hpy188I	TCNGA	4 cut(s)	111, 189, 230, 414
Hpy188III	TCNNGA	4 cut(s)	81, 170, 261, 305
Hpy99I	CGWCG	1 cut(s)	414
HpyAV	CCTTC	3 cut(s)	194, 385, 418
HpyCH4III	ACNGT	3 cut(s)	160, 196, 235
HpyCH4V	TGCA	3 cut(s)	38, 359, 368
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 136, 148, 280, 296, 365
HpyF3I	CTNAG	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	432
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	223
Lsp1109I	GCAGC	4 cut(s)	22, 139, 202, 323
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	3 cut(s)	81, 261, 296
MaeIII	GTNAC	3 cut(s)	143, 179, 376
MalI	GATC	1 cut(s)	434
MboI	GATC	1 cut(s)	432
MboII	GAAGA	7 cut(s)	39, 69, 145, 158, 202, 353, 400
MflI	RGATCY	1 cut(s)	432
MluCI	AATT	3 cut(s)	174, 300, 360
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	4 cut(s)	134, 257, 372, 392
MnlI	CCTC	9 cut(s)	67, 84, 87, 94, 301, 310, 362, 413, 423
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	2 cut(s)	24, 71
MspR9I	CCNGG	2 cut(s)	120, 153
MvaI	CCWGG	2 cut(s)	120, 153
MwoI	GCNNNNNNNGC	6 cut(s)	62, 136, 148, 280, 296, 365
NdeII	GATC	1 cut(s)	432
NlaIII	CATG	1 cut(s)	368
NmuCI	GTSAC	2 cut(s)	179, 376
PaqCI	CACCTGC	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	175
PfeI	GAWTC	2 cut(s)	74, 344
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	5 cut(s)	37, 129, 141, 217, 313
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	118, 151
PspFI	CCCAGC	1 cut(s)	211
PspGI	CCWGG	2 cut(s)	118, 151
PspPI	GGNCC	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	432
PvuII	CAGCTG	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	383
SapI	GCTCTTC	1 cut(s)	171
SatI	GCNGC	5 cut(s)	36, 128, 140, 216, 312
Sau3AI	GATC	1 cut(s)	432
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	120, 153
SetI	ASST	6 cut(s)	37, 50, 64, 186, 217, 354
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	3 cut(s)	174, 300, 360
SsiI	CCGC	3 cut(s)	21, 139, 373
SspMI	CTAG	3 cut(s)	81, 261, 296
StyD4I	CCNGG	2 cut(s)	118, 151
TaaI	ACNGT	3 cut(s)	160, 196, 235
TasI	AATT	3 cut(s)	174, 300, 360
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	74, 344
TscAI	CASTG	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	179, 376
TseI	GCWGC	4 cut(s)	35, 127, 215, 311
Tsp45I	GTSAC	2 cut(s)	179, 376
TspDTI	ATGAA	3 cut(s)	214, 353, 401
TspRI	CASTG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	174
XbaI	TCTAGA	2 cut(s)	80, 260
XspI	CTAG	3 cut(s)	81, 261, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.