AT1G01410

regulation of translation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009111
Physical Location & Seq
Forward (+)
153113 .. 154198
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01410.1

Sequence Viewer

Length: 1086 bp
ATGACTCATGAACGCGGCTATGATTTGGCGTCACAAGTACTAAACATTTGCAACGTACATCACAAGAAACTGTTTTGCCATATCACGTACCGTCACTTGTTGGTCTTGTCGAGTGACGATAACGGTTGCGTCATACTCAAGAAAGTTATAACAATAGCTGATGATTTCTTGAAAGATGAATTCCTTGACCTAATCGCACAGCACGCTCACTCGCTAAGCATGCACGACTTAGGAATCTCCCTAATCCAGCACGTGCTTGAGCTTGATTTTACAAAGAAAACCACACAAGACGACAAGCGCTTGCACGAGCTAATGGCTGAGTTTGATGAGGTTCTCTCGACATCAGTAACAGCAGATGTTGATAAGCTCCATAAGCTTGCCTCGAAGCTAATGTTAGATTCTGATCTCTTTTTCGAGTTTGTCATAACAAGACGAGGCTCGCTCATGATTCAAATTATCCTAGGAAAATCCGAAGAAGTCGACCAAGTTATTTTGGCGGGAGTGAAGCAAAGGTTCATCGATGTTACAACAAACTTTTACGGGTATCGCATCATGATACAAACCATAAAAGTTTTCAAGAAAAGAGGTGATTTGAAAGTGTACGACCAAATCCTACGCCTAATCGGAGTCCACGCTCTCTACCTAACAAAGGACCCTGATATGGGAAACAAGACGTTTCAACACGCTATTAATCTACACCACCAGGATTGTACGACATTCATCGCGTGTGGGCTTCAAAGCCACTACATTGAGCTTTCGTTTCTGAAACATGGAAGCAAAATTGTGGAGATGCTTATCGATGACCGTATTTCGATGGTGCCTTTGGTTCTACTCATGATGGAGATTGTCAAGTGTGATGAAGATACGTTGGTGAGATTGGCTACTGATGAATATGGGAATAACATTTTGAAAAAGTTTCTGGCACTTGCCAAAGAGCATAAGGAAGATTTCTTTGGTGATCTTGTTGACAAGTTGAATCCTTTACTCGATAGTTTGCGCGGGACTCTCGGAGAAAACATTGTAGCAATCATCGACTCAGAAACAGAGATGGTTAAGGATCGAATTGTTTCACAAGGAAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUF

Protein Analysis

361

Amino Acids

41.25

Weight (kDa)

5.81

Isoelectric Point (pI)

30.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01410 AT1G21620 AT1G35850 AT1G35850 AT5G59280 AT5G60110 AT5G60180 AT5G64490
fragaria_vesca FvH4_3g00680
malus_domestica MD05G1360200.v1.1
prunus_persica Prupe.4G007700_v2.0.a1
pyrus_communis pycom05g32520
rosa_chinensis RchiOBHm_Chr5g0000911
rosa_laevigata RLG00000030906
rosa_roxburghii Rroxscaffold_1G00075340
rosa_rugosa Rorug04G0387800 Rorug04G0387900.1
rosa_samantha Rh5AG007400 Rh5BG009500 Rh5CG008100 Rh5DG008100
rosa_wichuraiana Rw5G000770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 817
AccI GTMKAC 1 cut(s) 480
AccII CGCG 3 cut(s) 15, 725, 999
AciI CCGC 3 cut(s) 15, 497, 999
AclWI GGATC 1 cut(s) 1065
AcsI RAATTY 1 cut(s) 179
AcvI CACGTG 1 cut(s) 253
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 5 cut(s) 39, 57, 89, 602, 712
AfeI AGCGCT 1 cut(s) 299
AfiI CCNNNNNNNGG 3 cut(s) 649, 661, 662
AgsI TTSAA 8 cut(s) 172, 452, 577, 595, 680, 737, 910, 976
AjnI CCWGG 1 cut(s) 702
AjuI GAANNNNNNNTTGG 2 cut(s) 936, 968
AluBI AGCT 7 cut(s) 158, 262, 310, 367, 376, 388, 754
AluI AGCT 7 cut(s) 158, 262, 310, 367, 376, 388, 754
AlwI GGATC 1 cut(s) 1065
Aor51HI AGCGCT 1 cut(s) 299
ApoI RAATTY 1 cut(s) 179
AseI ATTAAT 1 cut(s) 690
Asp700I GAANNNNTTC 1 cut(s) 1066
AspA2I CCTAGG 1 cut(s) 460
AspLEI GCGC 2 cut(s) 300, 999
AspS9I GGNCC 1 cut(s) 652
AsuHPI GGTGA 3 cut(s) 599, 883, 968
AvaII GGWCC 1 cut(s) 652
AvrII CCTAGG 1 cut(s) 460
BaeI ACNNNNGTAYC 2 cut(s) 855, 888
BanI GGYRCC 1 cut(s) 817
BauI CACGAG 1 cut(s) 305
BbrPI CACGTG 1 cut(s) 253
BccI CCATC 3 cut(s) 808, 832, 1042
BciT130I CCWGG 1 cut(s) 704
BfaI CTAG 1 cut(s) 461
BfoI RGCGCY 1 cut(s) 301
BisI GCNGC 1 cut(s) 16
BlnI CCTAGG 1 cut(s) 460
BlpI GCTNAGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 17
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 704
Bme18I GGWCC 1 cut(s) 652
BmgT120I GGNCC 1 cut(s) 652
BmiI GGNNCC 2 cut(s) 654, 819
BmrFI CCNGG 1 cut(s) 704
BmsI GCATC 2 cut(s) 558, 780
BplI GAGNNNNNCTC 4 cut(s) 320, 352, 426, 458
Bpu1102I GCTNAGC 1 cut(s) 215
BpuEI CTTGAG 2 cut(s) 122, 278
Bsa29I ATCGAT 2 cut(s) 519, 798
BsaAI YACGTR 2 cut(s) 87, 253
BsaBI GATNNNNATC 2 cut(s) 402, 794
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 460
Bsc4I CCNNNNNNNGG 3 cut(s) 649, 661, 662
Bse8I GATNNNNATC 2 cut(s) 402, 794
BseBI CCWGG 1 cut(s) 704
BseCI ATCGAT 2 cut(s) 519, 798
BseDI CCNNGG 1 cut(s) 460
BseJI GATNNNNATC 2 cut(s) 402, 794
BseLI CCNNNNNNNGG 3 cut(s) 649, 661, 662
BseMII CTCAG 2 cut(s) 309, 1050
Bsh1236I CGCG 3 cut(s) 15, 725, 999
BshNI GGYRCC 1 cut(s) 817
BshVI ATCGAT 2 cut(s) 519, 798
BslFI GGGAC 1 cut(s) 1015
BslI CCNNNNNNNGG 3 cut(s) 649, 661, 662
BsmFI GGGAC 1 cut(s) 1015
Bsp143I GATC 3 cut(s) 403, 958, 1057
Bsp1720I GCTNAGC 1 cut(s) 215
BspACI CCGC 3 cut(s) 15, 497, 999
BspCNI CTCAG 2 cut(s) 310, 1049
BspDI ATCGAT 2 cut(s) 519, 798
BspFNI CGCG 3 cut(s) 15, 725, 999
BspHI TCATGA 4 cut(s) 7, 444, 552, 834
BspLI GGNNCC 2 cut(s) 654, 819
BspPI GGATC 1 cut(s) 1065
BspT107I GGYRCC 1 cut(s) 817
BssECI CCNNGG 1 cut(s) 460
BssMI GATC 3 cut(s) 403, 958, 1057
BssNI GRCGYC 1 cut(s) 29
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 460
Bst2BI CACGAG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 4 cut(s) 72, 92, 125, 806
BstACI GRCGYC 1 cut(s) 29
BstBAI YACGTR 2 cut(s) 87, 253
BstC8I GCNNGC 5 cut(s) 204, 221, 302, 378, 440
BstDEI CTNAG 4 cut(s) 215, 229, 318, 1036
BstENI CCTNNNNNAGG 1 cut(s) 647
BstFNI CGCG 3 cut(s) 15, 725, 999
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 2 cut(s) 300, 999
BstKTI GATC 3 cut(s) 406, 961, 1060
BstMBI GATC 3 cut(s) 403, 958, 1057
BstMWI GCNNNNNNNGC 3 cut(s) 203, 220, 373
BstNI CCWGG 1 cut(s) 704
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 702
BstUI CGCG 3 cut(s) 15, 725, 999
Bsu15I ATCGAT 2 cut(s) 519, 798
BsuTUI ATCGAT 2 cut(s) 519, 798
BtgZI GCGATG 1 cut(s) 706
Cac8I GCNNGC 5 cut(s) 204, 221, 302, 378, 440
CciI TCATGA 4 cut(s) 7, 444, 552, 834
CfoI GCGC 2 cut(s) 300, 999
Cfr13I GGNCC 1 cut(s) 652
ClaI ATCGAT 2 cut(s) 519, 798
CseI GACGC 2 cut(s) 18, 118
Csp6I GTAC 5 cut(s) 38, 56, 88, 601, 711
CspCI CAANNNNNGTGG 2 cut(s) 689, 724
CviAII CATG 6 cut(s) 8, 220, 445, 553, 770, 835
CviQI GTAC 5 cut(s) 38, 56, 88, 601, 711
DdeI CTNAG 4 cut(s) 215, 229, 318, 1036
DpnI GATC 3 cut(s) 405, 960, 1059
DpnII GATC 3 cut(s) 403, 958, 1057
Eco130I CCWWGG 1 cut(s) 460
Eco47I GGWCC 1 cut(s) 652
Eco47III AGCGCT 1 cut(s) 299
Eco72I CACGTG 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 647
EcoO109I RGGNCCY 1 cut(s) 652
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 460
FaeI CATG 6 cut(s) 11, 223, 448, 556, 773, 838
FaqI GGGAC 1 cut(s) 1015
FatI CATG 6 cut(s) 7, 219, 444, 552, 769, 834
FauI CCCGC 2 cut(s) 490, 992
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 16
FspBI CTAG 1 cut(s) 461
GlaI GCGC 2 cut(s) 299, 998
GluI GCNGC 1 cut(s) 16
HaeII RGCGCY 1 cut(s) 301
HgaI GACGC 2 cut(s) 18, 118
HhaI GCGC 2 cut(s) 300, 999
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 6 cut(s) 11, 223, 448, 556, 773, 838
Hin6I GCGC 2 cut(s) 298, 997
HinP1I GCGC 2 cut(s) 298, 997
HincII GTYRAC 2 cut(s) 481, 967
HindII GTYRAC 2 cut(s) 481, 967
HindIII AAGCTT 1 cut(s) 374
HinfI GANTC 8 cut(s) 4, 234, 398, 448, 627, 976, 1003, 1034
HphI GGTGA 3 cut(s) 599, 883, 968
Hpy166II GTNNAC 4 cut(s) 481, 601, 631, 967
Hpy188I TCNGA 6 cut(s) 403, 472, 626, 765, 1010, 1039
Hpy188III TCNNGA 8 cut(s) 8, 139, 169, 337, 445, 553, 577, 835
Hpy8I GTNNAC 4 cut(s) 481, 601, 631, 967
HpyCH4III ACNGT 4 cut(s) 72, 92, 125, 806
HpyCH4IV ACGT 5 cut(s) 54, 86, 252, 674, 866
HpyCH4V TGCA 3 cut(s) 51, 223, 304
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 220, 373
HpyF3I CTNAG 4 cut(s) 215, 229, 318, 1036
HpySE526I ACGT 5 cut(s) 54, 86, 252, 674, 866
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 6 cut(s) 11, 223, 448, 556, 773, 838
HspAI GCGC 2 cut(s) 298, 997
Kzo9I GATC 3 cut(s) 403, 958, 1057
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 5 cut(s) 260, 669, 689, 716, 905
LweI GCATC 2 cut(s) 558, 780
MaeI CTAG 1 cut(s) 461
MaeII ACGT 5 cut(s) 54, 86, 252, 674, 866
MaeIII GTNAC 5 cut(s) 30, 92, 113, 346, 523
MalI GATC 3 cut(s) 405, 960, 1059
MboI GATC 3 cut(s) 403, 958, 1057
MboII GAAGA 3 cut(s) 485, 872, 956
MluCI AATT 5 cut(s) 179, 453, 780, 1062, 1081
MlyI GAGTC 3 cut(s) 636, 997, 1028
MnlI CCTC 4 cut(s) 322, 391, 428, 578
MroXI GAANNNNTTC 1 cut(s) 1066
MseI TTAA 2 cut(s) 690, 1053
MspR9I CCNGG 1 cut(s) 704
MvaI CCWGG 1 cut(s) 704
MvnI CGCG 3 cut(s) 15, 725, 999
MwoI GCNNNNNNNGC 3 cut(s) 203, 220, 373
NdeII GATC 3 cut(s) 403, 958, 1057
NlaIII CATG 6 cut(s) 11, 223, 448, 556, 773, 838
NlaIV GGNNCC 2 cut(s) 654, 819
NmuCI GTSAC 3 cut(s) 30, 92, 113
NspI RCATGY 1 cut(s) 223
PaeI GCATGC 1 cut(s) 223
PagI TCATGA 4 cut(s) 7, 444, 552, 834
PdmI GAANNNNTTC 1 cut(s) 1066
PfeI GAWTC 4 cut(s) 234, 398, 448, 976
PkrI GCNGC 1 cut(s) 17
PleI GAGTC 3 cut(s) 635, 997, 1028
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
PpsI GAGTC 3 cut(s) 635, 997, 1028
Ppu21I YACGTR 2 cut(s) 87, 253
PpuMI RGGWCCY 1 cut(s) 652
PshBI ATTAAT 1 cut(s) 690
PsiI TTATAA 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 1 cut(s) 702
PspCI CACGTG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 2 cut(s) 654, 819
PspPI GGNCC 1 cut(s) 652
PspPPI RGGWCCY 1 cut(s) 652
RsaI GTAC 5 cut(s) 39, 57, 89, 602, 712
RsaNI GTAC 5 cut(s) 38, 56, 88, 601, 711
SalI GTCGAC 1 cut(s) 479
SaqAI TTAA 2 cut(s) 690, 1053
SatI GCNGC 1 cut(s) 16
Sau3AI GATC 3 cut(s) 403, 958, 1057
Sau96I GGNCC 1 cut(s) 652
ScaI AGTACT 1 cut(s) 39
SchI GAGTC 3 cut(s) 636, 997, 1028
ScrFI CCNGG 1 cut(s) 704
SfaNI GCATC 2 cut(s) 558, 780
SinI GGWCC 1 cut(s) 652
SmlI CTYRAG 2 cut(s) 137, 257
SmoI CTYRAG 2 cut(s) 137, 257
SphI GCATGC 1 cut(s) 223
Sse9I AATT 5 cut(s) 179, 453, 780, 1062, 1081
SsiI CCGC 3 cut(s) 15, 497, 999
SspMI CTAG 1 cut(s) 461
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 4 cut(s) 72, 92, 125, 806
TaiI ACGT 5 cut(s) 57, 89, 255, 677, 869
TasI AATT 5 cut(s) 179, 453, 780, 1062, 1081
TatI WGTACW 1 cut(s) 37
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 4 cut(s) 234, 398, 448, 976
Tru1I TTAA 2 cut(s) 690, 1053
Tru9I TTAA 2 cut(s) 690, 1053
TseFI GTSAC 3 cut(s) 30, 92, 113
Tsp45I GTSAC 3 cut(s) 30, 92, 113
TspDTI ATGAA 6 cut(s) 24, 192, 505, 709, 873, 903
VpaK11BI GGWCC 1 cut(s) 652
VspI ATTAAT 1 cut(s) 690
XagI CCTNNNNNAGG 1 cut(s) 647
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 223
XmaJI CCTAGG 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 1066
XspI CTAG 1 cut(s) 461
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.