FvH4_3g00680

Pumilio homolog 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009111
Physical Location & Seq
Forward (+)
327659 .. 330064
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00680.t1

Sequence Viewer

Length: 1476 bp
ATGTCGATTTCGATGTCGGTTTCCGGCGGCACTAGTCCTTGTGGATCTCTCAATCCAAAGAAAACCTCGTTTCAAGAAGAAGACCTTTGCCTTTATTTCGGCAAGTTTAGGGTAAAGATGGACGACTCTAAAGAGACCAATACTTCTTCCCCAGGTTCGTCTTCTAATGTTTCTCCACCCAAACCCCAACAACAACAATCAGAGGCTTATTGTTATCCCAAACATGAAATTGGGTTTGGAAATTCTCACTCTGCTCCAGTTCCATTGTATTCACAAGATATATGGAGAGGTCAAAGTGACATCGCTGCAGGAGAATATTTGGGTTCAAACAACCTGAATGGGCAGGTTTTGACAAGGAATGGGAACCCTAGAGTAGATGCATATGCTGGTTTTCAATCTCATGAGGTGGCTGAGAAGAGTGGAATGTATTCCAATGATAATTGGTATCAAAGTTCGAGAACGTTGAATGATATGGGGAATCAATCAAGCTTTGGCAATGACTCATTGCTAGGAAGCAGCTATATAGCTCAGACGGCTATGACTCAATCTGGCTCACAGCACTTGCTAGCTAGCTTGTTGACTAAGGACCCCGTAGTTACAAATATGATATTTGAAGGTGTTTTTGATTTTCTATTTGAGGTGATGAATGATTCAAATGGACATCATGTGTTTGCGAAGCTAATTCTGTCATGCAGTGATAATCATCTATTCCTCATTGTATCAAAGATAGCTTGGAATGCTCGATTACTTATCAAGATATCAGTCAGCAGATACGGCTCGAAATCGGTTCAGAGGCTGATCAAGGTGCTTGAGAAATCGCCTTTGATTGACATTGTGATAGTAGCCCTATCAAGTGGATTTGAAGAACTGATGACCAATCGTTCAGGATCTTTCATTATATTGAAGTGCTTAAACCTCCTTGACAATGAGAAAAATCAGAAACTATATGAAGCTGCAGTAAATCTTTGCATCCCATTGGCTCAGAATGAAAAAGGATGTATATACTTGAATGAGTTCATCACCAACAGTAAAGCTCCATATAGAGAGACACTCATGAATGTGATTTCAAGCAAATCAAAATTCCTTTCTCAGCATCCTTCAGGGAACTTTGTTCTTCAGCACATCCTCGGACTCCACAATCCCATTTACAGCGAGTACATATGTCTGGAGCTGAGAGATCTTTATATACAACTCTCGTTACAAAAAGGTGGCAGTCACGTTGTGGAGAAGTGTTTAAACTCGTCCGGGATGGTACATGTGGTAAGTGTTCTTCTCAAGTATGAGAAACTTTGTCAAGTTGCGAGGGATCAGTATGGAAACTACGTGATCCAAACAGCATTGAAGGCCACGAAGAGCGCAAATAGTCCCCTTCATCAAATGCTTATATCGAAGCTTTTACAGAATCGGAATGAACTTGTGTTTGGATTTGGAAGGAAAGTGCTTGGTTTGATTGACAATGGGATCCCACTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUF

Protein Analysis

492

Amino Acids

54.39

Weight (kDa)

7.95

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUF_NOP9 PF22493 173 - 416 2.1e-06 NOP9-like PUF repeat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01410 AT1G21620 AT1G35850 AT1G35850 AT5G59280 AT5G60110 AT5G60180 AT5G64490
fragaria_vesca FvH4_3g00680
malus_domestica MD05G1360200.v1.1
prunus_persica Prupe.4G007700_v2.0.a1
pyrus_communis pycom05g32520
rosa_chinensis RchiOBHm_Chr5g0000911
rosa_laevigata RLG00000030906
rosa_roxburghii Rroxscaffold_1G00075340
rosa_rugosa Rorug04G0387800 Rorug04G0387900.1
rosa_samantha Rh5AG007400 Rh5BG009500 Rh5CG008100 Rh5DG008100
rosa_wichuraiana Rw5G000770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 334
AciI CCGC 1 cut(s) 27
AclI AACGTT 1 cut(s) 461
AclWI GGATC 6 cut(s) 52, 895, 1314, 1321, 1456, 1469
AcsI RAATTY 2 cut(s) 241, 1079
AcuI CTGAAG 2 cut(s) 1083, 1100
AdeI CACNNNGTG 1 cut(s) 1222
AfaI GTAC 2 cut(s) 1157, 1254
AflIII ACRYGT 1 cut(s) 1255
AhlI ACTAGT 1 cut(s) 32
AjnI CCWGG 1 cut(s) 151
AjuI GAANNNNNNNTTGG 4 cut(s) 219, 251, 1404, 1436
Alw26I GTCTC 2 cut(s) 128, 1040
AlwI GGATC 6 cut(s) 52, 895, 1314, 1321, 1456, 1469
AlwNI CAGNNNCTG 1 cut(s) 796
AoxI GGCC 1 cut(s) 1344
ApeKI GCWGC 3 cut(s) 305, 516, 953
ApoI RAATTY 2 cut(s) 241, 1079
Asp700I GAANNNNTTC 2 cut(s) 427, 1013
AspLEI GCGC 1 cut(s) 1358
AspS9I GGNCC 1 cut(s) 586
AsuC2I CCSGG 1 cut(s) 1246
AsuHPI GGTGA 2 cut(s) 652, 1012
AsuNHI GCTAGC 2 cut(s) 565, 569
AvaII GGWCC 1 cut(s) 586
BamHI GGATCC 1 cut(s) 1461
BarI GAAGNNNNNNTAC 2 cut(s) 1254, 1286
BbsI GAAGAC 2 cut(s) 87, 153
BbvI GCAGC 3 cut(s) 292, 528, 940
BccI CCATC 2 cut(s) 112, 1243
BceAI ACGGC 2 cut(s) 549, 790
BciT130I CCWGG 1 cut(s) 153
BclI TGATCA 1 cut(s) 798
BcnI CCSGG 1 cut(s) 1246
BcoDI GTCTC 2 cut(s) 128, 1040
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 6 cut(s) 33, 369, 509, 566, 570, 1469
BfmI CTRYAG 2 cut(s) 306, 954
BfuAI ACCTGC 1 cut(s) 334
BglII AGATCT 1 cut(s) 1177
BisI GCNGC 4 cut(s) 28, 306, 517, 954
BlsI GCNGC 4 cut(s) 29, 307, 518, 955
Bme1390I CCNGG 2 cut(s) 153, 1246
Bme18I GGWCC 1 cut(s) 586
BmgT120I GGNCC 1 cut(s) 586
BmiI GGNNCC 3 cut(s) 365, 588, 1463
BmrFI CCNGG 2 cut(s) 153, 1246
BmsI GCATC 3 cut(s) 367, 978, 1102
BmtI GCTAGC 2 cut(s) 569, 573
BpiI GAAGAC 2 cut(s) 87, 153
BplI GAGNNNNNCTC 2 cut(s) 1035, 1067
BpmI CTGGAG 2 cut(s) 240, 1187
BpuEI CTTGAG 2 cut(s) 830, 1259
BpuMI CCSGG 1 cut(s) 1246
BsaAI YACGTR 1 cut(s) 1324
BsaBI GATNNNNATC 1 cut(s) 702
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 151, 1126
Bse1I ACTGG 1 cut(s) 257
Bse3DI GCAATG 2 cut(s) 502, 503
Bse8I GATNNNNATC 1 cut(s) 702
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 2 cut(s) 151, 1126
BseGI GGATG 5 cut(s) 969, 1001, 1093, 1122, 1254
BseJI GATNNNNATC 1 cut(s) 702
BseMI GCAATG 2 cut(s) 502, 503
BseMII CTCAG 5 cut(s) 402, 542, 995, 1103, 1163
BseNI ACTGG 1 cut(s) 257
BseXI GCAGC 3 cut(s) 292, 528, 940
BshFI GGCC 1 cut(s) 1346
BsiSI CCGG 2 cut(s) 24, 1245
BslFI GGGAC 1 cut(s) 1350
BsmAI GTCTC 2 cut(s) 128, 1040
BsmFI GGGAC 1 cut(s) 1350
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 1 cut(s) 1346
Bso31I GGTCTC 1 cut(s) 128
Bsp143I GATC 7 cut(s) 44, 798, 887, 1177, 1306, 1326, 1461
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 1346
BspCNI CTCAG 5 cut(s) 403, 541, 994, 1102, 1164
BspHI TCATGA 2 cut(s) 400, 1053
BspLI GGNNCC 3 cut(s) 365, 588, 1463
BspMAI CTGCAG 2 cut(s) 310, 958
BspMI ACCTGC 1 cut(s) 334
BspOI GCTAGC 2 cut(s) 569, 573
BspPI GGATC 6 cut(s) 52, 895, 1314, 1321, 1456, 1469
BspQI GCTCTTC 1 cut(s) 1346
BspTNI GGTCTC 1 cut(s) 128
BsrDI GCAATG 2 cut(s) 502, 503
BsrI ACTGG 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 151, 1126
BssMI GATC 7 cut(s) 44, 798, 887, 1177, 1306, 1326, 1461
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 1028
Bst6I CTCTTC 2 cut(s) 410, 1346
BstBAI YACGTR 1 cut(s) 1324
BstC8I GCNNGC 2 cut(s) 567, 571
BstDEI CTNAG 6 cut(s) 411, 528, 582, 981, 1089, 1172
BstF5I GGATG 5 cut(s) 969, 1001, 1093, 1122, 1254
BstHHI GCGC 1 cut(s) 1358
BstKTI GATC 7 cut(s) 47, 801, 890, 1180, 1309, 1329, 1464
BstMAI GTCTC 2 cut(s) 128, 1040
BstMBI GATC 7 cut(s) 44, 798, 887, 1177, 1306, 1326, 1461
BstMWI GCNNNNNNNGC 4 cut(s) 533, 737, 774, 1343
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 1259
BstSCI CCNGG 2 cut(s) 151, 1244
BstSFI CTRYAG 2 cut(s) 306, 954
BstV1I GCAGC 3 cut(s) 292, 528, 940
BstV2I GAAGAC 2 cut(s) 87, 153
BstX2I RGATCY 4 cut(s) 44, 887, 1177, 1461
BstYI RGATCY 4 cut(s) 44, 887, 1177, 1461
BsuRI GGCC 1 cut(s) 1346
BtgZI GCGATG 1 cut(s) 286
BtsCI GGATG 5 cut(s) 969, 1001, 1093, 1122, 1254
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 1 cut(s) 700
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 567, 571
CaiI CAGNNNCTG 1 cut(s) 796
CciI TCATGA 2 cut(s) 400, 1053
CfoI GCGC 1 cut(s) 1358
Cfr13I GGNCC 1 cut(s) 586
Csp6I GTAC 2 cut(s) 1156, 1253
CviAII CATG 6 cut(s) 224, 401, 665, 690, 1054, 1256
CviQI GTAC 2 cut(s) 1156, 1253
DdeI CTNAG 6 cut(s) 411, 528, 582, 981, 1089, 1172
DpnI GATC 7 cut(s) 46, 800, 889, 1179, 1308, 1328, 1463
DpnII GATC 7 cut(s) 44, 798, 887, 1177, 1306, 1326, 1461
DraI TTTAAA 1 cut(s) 1236
DraIII CACNNNGTG 1 cut(s) 1222
Eam1104I CTCTTC 2 cut(s) 410, 1346
EarI CTCTTC 2 cut(s) 410, 1346
Eco31I GGTCTC 1 cut(s) 128
Eco32I GATATC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 586
Eco57I CTGAAG 2 cut(s) 1083, 1100
EcoO109I RGGNCCY 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 151
EcoRV GATATC 1 cut(s) 759
EcoT22I ATGCAT 1 cut(s) 382
FaeI CATG 6 cut(s) 227, 404, 668, 693, 1057, 1259
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 1 cut(s) 1350
FatI CATG 6 cut(s) 223, 400, 664, 689, 1053, 1255
FauNDI CATATG 2 cut(s) 382, 1160
FbaI TGATCA 1 cut(s) 798
Fnu4HI GCNGC 4 cut(s) 28, 306, 517, 954
FokI GGATG 5 cut(s) 956, 1008, 1080, 1109, 1261
Fsp4HI GCNGC 4 cut(s) 28, 306, 517, 954
FspBI CTAG 6 cut(s) 33, 369, 509, 566, 570, 1469
GlaI GCGC 1 cut(s) 1357
GluI GCNGC 4 cut(s) 28, 306, 517, 954
GsuI CTGGAG 2 cut(s) 240, 1187
HaeIII GGCC 1 cut(s) 1346
HapII CCGG 2 cut(s) 24, 1245
HhaI GCGC 1 cut(s) 1358
Hin1II CATG 6 cut(s) 227, 404, 668, 693, 1057, 1259
Hin6I GCGC 1 cut(s) 1356
HinP1I GCGC 1 cut(s) 1356
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HindIII AAGCTT 2 cut(s) 487, 1391
HinfI GANTC 7 cut(s) 125, 478, 500, 541, 650, 1131, 1402
HpaII CCGG 2 cut(s) 24, 1245
HphI GGTGA 2 cut(s) 652, 1012
Hpy166II GTNNAC 1 cut(s) 579
Hpy188I TCNGA 7 cut(s) 202, 531, 792, 939, 984, 1130, 1407
Hpy188III TCNNGA 7 cut(s) 74, 401, 456, 754, 885, 1054, 1166
Hpy8I GTNNAC 1 cut(s) 579
HpyAV CCTTC 5 cut(s) 608, 1107, 1336, 1379, 1425
HpyCH4III ACNGT 1 cut(s) 1028
HpyCH4IV ACGT 3 cut(s) 461, 1218, 1323
HpyCH4V TGCA 5 cut(s) 308, 380, 693, 956, 969
HpyF10VI GCNNNNNNNGC 4 cut(s) 533, 737, 774, 1343
HpyF3I CTNAG 6 cut(s) 411, 528, 582, 981, 1089, 1172
HpySE526I ACGT 3 cut(s) 461, 1218, 1323
Hsp92II CATG 6 cut(s) 227, 404, 668, 693, 1057, 1259
HspAI GCGC 1 cut(s) 1356
Ksp22I TGATCA 1 cut(s) 798
Kzo9I GATC 7 cut(s) 44, 798, 887, 1177, 1306, 1326, 1461
LguI GCTCTTC 1 cut(s) 1346
LmnI GCTCC 3 cut(s) 259, 1039, 1168
Lsp1109I GCAGC 3 cut(s) 292, 528, 940
LweI GCATC 3 cut(s) 367, 978, 1102
MaeI CTAG 6 cut(s) 33, 369, 509, 566, 570, 1469
MaeII ACGT 3 cut(s) 461, 1218, 1323
MaeIII GTNAC 4 cut(s) 296, 595, 1197, 1214
MalI GATC 7 cut(s) 46, 800, 889, 1179, 1308, 1328, 1463
MboI GATC 7 cut(s) 44, 798, 887, 1177, 1306, 1326, 1461
MboII GAAGA 9 cut(s) 89, 92, 138, 153, 427, 875, 1106, 1262, 1363
MflI RGATCY 4 cut(s) 44, 887, 1177, 1461
MluCI AATT 5 cut(s) 228, 241, 439, 681, 1079
MlyI GAGTC 4 cut(s) 119, 494, 535, 1125
Mph1103I ATGCAT 1 cut(s) 382
MroXI GAANNNNTTC 2 cut(s) 427, 1013
MseI TTAA 2 cut(s) 911, 1235
MslI CAYNNNNRTG 1 cut(s) 1058
MspI CCGG 2 cut(s) 24, 1245
MspR9I CCNGG 2 cut(s) 153, 1246
MssI GTTTAAAC 1 cut(s) 1236
Mva1269I GAATGC 1 cut(s) 742
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 533, 737, 774, 1343
NciI CCSGG 1 cut(s) 1246
NdeI CATATG 2 cut(s) 382, 1160
NdeII GATC 7 cut(s) 44, 798, 887, 1177, 1306, 1326, 1461
NheI GCTAGC 2 cut(s) 565, 569
NlaIII CATG 6 cut(s) 227, 404, 668, 693, 1057, 1259
NlaIV GGNNCC 3 cut(s) 365, 588, 1463
NmuCI GTSAC 2 cut(s) 296, 1214
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 1 cut(s) 1259
PagI TCATGA 2 cut(s) 400, 1053
PciI ACATGT 1 cut(s) 1255
PciSI GCTCTTC 1 cut(s) 1346
PctI GAATGC 1 cut(s) 742
PdmI GAANNNNTTC 2 cut(s) 427, 1013
PfeI GAWTC 3 cut(s) 478, 650, 1402
PfoI TCCNGGA 1 cut(s) 1244
PkrI GCNGC 4 cut(s) 29, 307, 518, 955
PleI GAGTC 4 cut(s) 119, 494, 535, 1125
PmeI GTTTAAAC 1 cut(s) 1236
PpsI GAGTC 4 cut(s) 119, 494, 535, 1125
Ppu21I YACGTR 1 cut(s) 1324
PpuMI RGGWCCY 1 cut(s) 586
PscI ACATGT 1 cut(s) 1255
Psp1406I AACGTT 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 365, 588, 1463
PspPI GGNCC 1 cut(s) 586
PspPPI RGGWCCY 1 cut(s) 586
PstI CTGCAG 2 cut(s) 310, 958
PstNI CAGNNNCTG 1 cut(s) 796
PsuI RGATCY 4 cut(s) 44, 887, 1177, 1461
RsaI GTAC 2 cut(s) 1157, 1254
RsaNI GTAC 2 cut(s) 1156, 1253
RseI CAYNNNNRTG 1 cut(s) 1058
SapI GCTCTTC 1 cut(s) 1346
SaqAI TTAA 2 cut(s) 911, 1235
SatI GCNGC 4 cut(s) 28, 306, 517, 954
Sau3AI GATC 7 cut(s) 44, 798, 887, 1177, 1306, 1326, 1461
Sau96I GGNCC 1 cut(s) 586
SchI GAGTC 4 cut(s) 119, 494, 535, 1125
ScrFI CCNGG 2 cut(s) 153, 1246
SfaNI GCATC 3 cut(s) 367, 978, 1102
SfcI CTRYAG 2 cut(s) 306, 954
SinI GGWCC 1 cut(s) 586
SmiMI CAYNNNNRTG 1 cut(s) 1058
SmlI CTYRAG 2 cut(s) 809, 1274
SmoI CTYRAG 2 cut(s) 809, 1274
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 5 cut(s) 228, 241, 439, 681, 1079
SsiI CCGC 1 cut(s) 27
SspI AATATT 1 cut(s) 317
SspMI CTAG 6 cut(s) 33, 369, 509, 566, 570, 1469
StyD4I CCNGG 2 cut(s) 151, 1244
TaaI ACNGT 1 cut(s) 1028
TaiI ACGT 3 cut(s) 464, 1221, 1326
TaqI TCGA 6 cut(s) 5, 11, 455, 742, 779, 1388
TasI AATT 5 cut(s) 228, 241, 439, 681, 1079
TatI WGTACW 1 cut(s) 1155
TauI GCSGC 1 cut(s) 30
TfiI GAWTC 3 cut(s) 478, 650, 1402
Tru1I TTAA 2 cut(s) 911, 1235
Tru9I TTAA 2 cut(s) 911, 1235
TscAI CASTG 1 cut(s) 700
TseFI GTSAC 2 cut(s) 296, 1214
TseI GCWGC 3 cut(s) 305, 516, 953
Tsp45I GTSAC 2 cut(s) 296, 1214
TspDTI ATGAA 9 cut(s) 240, 659, 883, 963, 1002, 1006, 1070, 1361, 1425
TspRI CASTG 1 cut(s) 700
VpaK11BI GGWCC 1 cut(s) 586
XapI RAATTY 2 cut(s) 241, 1079
XceI RCATGY 1 cut(s) 1259
XmnI GAANNNNTTC 2 cut(s) 427, 1013
XspI CTAG 6 cut(s) 33, 369, 509, 566, 570, 1469
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.