AT5G64490

regulation of translation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009111
Physical Location & Seq
Reverse (-)
25779225 .. 25780308
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G64490.1

Sequence Viewer

Length: 564 bp
ATGCTTAACCTCGACTTTACACACAAAACCACACAAGCCACGCCGCGCTTGCATGCTGTAGCGACTGAATTTCTCCGAGTATCGAATGATGTAGCGGAGCTCCATAAGCTTTCTTCCAAGCTGACGTCAGATCCTTATCTTTTTGTTGAGTTTGTCAAAACAATAAGAGGCTTCCTCAGTGTTCAGACGGCCTTAGGACTATCCGGAGAAATCGATACGGTTTTTCTCCAAGTTATCAAGGGTTGGTTTCCCGATCTTATAACCGAGACATTCAGTTTTCTCATCGTGGTACGAATCATAAACCTTTTCAATAAAAGAGCAAATTCAAAAGTGTATCCTGATATTCTTCGCAGAATCGGAAACAATGCTCTCTACCTAACAAGGAATCCTCTTAGGGGAATCTGCCTAGTAGAAAAGGCGATTAATGTCCGCGACCCGGACTGTACCGTGTTCATCGCGTTAAAGCTTCATAGTCACTACGTTGAGCTTTCGTTTGAGGAGCTAGGAAGCAACATTGTGGAGAAGCTTCTCAGTGTTGGTGAGTCGGGAATTTGTGGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUF

Protein Analysis

187

Amino Acids

21.01

Weight (kDa)

7.75

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01410 AT1G21620 AT1G35850 AT1G35850 AT5G59280 AT5G60110 AT5G60180 AT5G64490
fragaria_vesca FvH4_3g00680
malus_domestica MD05G1360200.v1.1
prunus_persica Prupe.4G007700_v2.0.a1
pyrus_communis pycom05g32520
rosa_chinensis RchiOBHm_Chr5g0000911
rosa_laevigata RLG00000030906
rosa_roxburghii Rroxscaffold_1G00075340
rosa_rugosa Rorug04G0387800 Rorug04G0387900.1
rosa_samantha Rh5AG007400 Rh5BG009500 Rh5CG008100 Rh5DG008100
rosa_wichuraiana Rw5G000770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AatII GACGTC 1 cut(s) 128
AccII CGCG 3 cut(s) 46, 432, 458
AccIII TCCGGA 1 cut(s) 203
AciI CCGC 3 cut(s) 44, 95, 430
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 3 cut(s) 68, 322, 549
AcyI GRCGYC 1 cut(s) 125
AfaI GTAC 2 cut(s) 291, 445
AfiI CCNNNNNNNGG 2 cut(s) 395, 436
AgsI TTSAA 2 cut(s) 310, 327
AluBI AGCT 7 cut(s) 100, 109, 121, 466, 487, 502, 526
AluI AGCT 7 cut(s) 100, 109, 121, 466, 487, 502, 526
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 125
Aor13HI TCCGGA 1 cut(s) 203
AoxI GGCC 1 cut(s) 189
ApoI RAATTY 3 cut(s) 68, 322, 549
AseI ATTAAT 1 cut(s) 423
AspLEI GCGC 1 cut(s) 48
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 551
AxyI CCTNAGG 1 cut(s) 193
BanII GRGCYC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 204
BciVI GTATCC 1 cut(s) 345
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 2 cut(s) 407, 503
BfmI CTRYAG 1 cut(s) 57
BfuI GTATCC 1 cut(s) 345
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 437
BmrFI CCNGG 1 cut(s) 437
BplI GAGNNNNNCTC 2 cut(s) 159, 191
BpuMI CCSGG 1 cut(s) 437
Bsa29I ATCGAT 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 2 cut(s) 395, 436
Bse21I CCTNAGG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 203
BseCI ATCGAT 1 cut(s) 213
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 395, 436
BseMII CTCAG 2 cut(s) 190, 544
BseRI GAGGAG 1 cut(s) 512
Bsh1236I CGCG 3 cut(s) 46, 432, 458
BshFI GGCC 1 cut(s) 191
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 204, 437
BslI CCNNNNNNNGG 2 cut(s) 395, 436
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 203
Bsp143I GATC 2 cut(s) 130, 253
BspACI CCGC 3 cut(s) 44, 95, 430
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 2 cut(s) 189, 543
BspDI ATCGAT 1 cut(s) 213
BspEI TCCGGA 1 cut(s) 203
BspFNI CGCG 3 cut(s) 46, 432, 458
BspPI GGATC 1 cut(s) 125
BssMI GATC 2 cut(s) 130, 253
BssNI GRCGYC 1 cut(s) 125
Bst4CI ACNGT 3 cut(s) 220, 443, 448
BstACI GRCGYC 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 50, 54
BstDEI CTNAG 4 cut(s) 176, 193, 392, 530
BstFNI CGCG 3 cut(s) 46, 432, 458
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 2 cut(s) 133, 256
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 130, 253
BstMWI GCNNNNNNNGC 2 cut(s) 49, 106
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 435
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 3 cut(s) 46, 432, 458
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
Bsu15I ATCGAT 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 193
BsuI GTATCC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 191
BsuTUI ATCGAT 1 cut(s) 213
BtgZI GCGATG 1 cut(s) 439
BtsIMutI CAGTG 2 cut(s) 184, 538
Cac8I GCNNGC 2 cut(s) 50, 54
CfoI GCGC 1 cut(s) 48
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 2 cut(s) 290, 444
CviAII CATG 1 cut(s) 53
CviQI GTAC 2 cut(s) 290, 444
DdeI CTNAG 4 cut(s) 176, 193, 392, 530
DpnI GATC 2 cut(s) 132, 255
DpnII GATC 2 cut(s) 130, 253
Ecl136II GAGCTC 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 102
Eco53kI GAGCTC 1 cut(s) 100
Eco81I CCTNAGG 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 100
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 1 cut(s) 56
FaiI YATR 5 cut(s) 54, 105, 260, 299, 471
FatI CATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 2 cut(s) 407, 503
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 44
HaeIII GGCC 1 cut(s) 191
HapII CCGG 2 cut(s) 204, 437
HhaI GCGC 1 cut(s) 48
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HindIII AAGCTT 3 cut(s) 107, 464, 524
HinfI GANTC 5 cut(s) 294, 354, 385, 399, 542
HpaII CCGG 2 cut(s) 204, 437
HphI GGTGA 1 cut(s) 551
Hpy188I TCNGA 4 cut(s) 77, 130, 186, 359
Hpy188III TCNNGA 4 cut(s) 204, 251, 338, 546
HpyCH4III ACNGT 3 cut(s) 220, 443, 448
HpyCH4IV ACGT 2 cut(s) 125, 480
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 106
HpyF3I CTNAG 4 cut(s) 176, 193, 392, 530
HpySE526I ACGT 2 cut(s) 125, 480
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 1 cut(s) 46
Kpn2I TCCGGA 1 cut(s) 203
Kzo9I GATC 2 cut(s) 130, 253
LmnI GCTCC 3 cut(s) 97, 105, 499
LpnPI CCDG 3 cut(s) 217, 351, 450
MaeI CTAG 2 cut(s) 407, 503
MaeII ACGT 2 cut(s) 125, 480
MaeIII GTNAC 1 cut(s) 473
MalI GATC 2 cut(s) 132, 255
MboI GATC 2 cut(s) 130, 253
MboII GAAGA 2 cut(s) 105, 338
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 3 cut(s) 68, 322, 549
MlyI GAGTC 1 cut(s) 551
MnlI CCTC 5 cut(s) 20, 161, 185, 399, 490
MroI TCCGGA 1 cut(s) 203
MseI TTAA 3 cut(s) 6, 423, 461
MspI CCGG 2 cut(s) 204, 437
MspR9I CCNGG 1 cut(s) 437
MvnI CGCG 3 cut(s) 46, 432, 458
MwoI GCNNNNNNNGC 2 cut(s) 49, 106
NciI CCSGG 1 cut(s) 437
NdeII GATC 2 cut(s) 130, 253
NlaIII CATG 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 473
NspI RCATGY 1 cut(s) 56
PaeI GCATGC 1 cut(s) 56
PfeI GAWTC 4 cut(s) 294, 354, 385, 399
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 1 cut(s) 550
PpsI GAGTC 1 cut(s) 550
PshBI ATTAAT 1 cut(s) 423
PsiI TTATAA 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 130
RsaI GTAC 2 cut(s) 291, 445
RsaNI GTAC 2 cut(s) 290, 444
SacI GAGCTC 1 cut(s) 102
SaqAI TTAA 3 cut(s) 6, 423, 461
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 2 cut(s) 130, 253
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 1 cut(s) 437
SduI GDGCHC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 57
SphI GCATGC 1 cut(s) 56
Sse9I AATT 3 cut(s) 68, 322, 549
SsiI CCGC 3 cut(s) 44, 95, 430
SspMI CTAG 2 cut(s) 407, 503
SstI GAGCTC 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 435
TaaI ACNGT 3 cut(s) 220, 443, 448
TaiI ACGT 2 cut(s) 128, 483
TaqI TCGA 3 cut(s) 12, 83, 213
TasI AATT 3 cut(s) 68, 322, 549
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 4 cut(s) 294, 354, 385, 399
Tru1I TTAA 3 cut(s) 6, 423, 461
Tru9I TTAA 3 cut(s) 6, 423, 461
TscAI CASTG 2 cut(s) 184, 538
TseFI GTSAC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 2 cut(s) 442, 458
TspRI CASTG 2 cut(s) 184, 538
VspI ATTAAT 1 cut(s) 423
XapI RAATTY 3 cut(s) 68, 322, 549
XceI RCATGY 1 cut(s) 56
XspI CTAG 2 cut(s) 407, 503
ZraI GACGTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.