Rh5DG008100

Pumilio homolog 12-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009111
Physical Location & Seq
Forward (+)
511373 .. 520275
8903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG008100.1

Sequence Viewer

Length: 1479 bp
ATGTCGGTTTCAGGTGGCACTAGTCCTTGTGGACCTCTCAACCCCAAAAAAACTTGGGTGGATTCCTCGTTTCAAGAAGAAGACCTTTGCCTTTATTTCCGTAAGTTTCGGGTAAACATGGACGACTCTAAAGACACCAGCTCTTCTTCTCTAGTTTCGTCTTCTGATGTCCCTCCAACCAAACCCCAACAACAATCAGAGGCTTATTGTTATCCCAAACATGAAATCGGGTTCGAAAAGTCTAACTCTGTTCCAATTCCATTATATTCACAAGATATTTGGAGAGGTCAAAGTGACAACGCTGCAGGACAACTTTTGGGTTCAAACAACCTGAATGGGCAAGTTTTGACAAGGAATGGGAACCCTAGACTAGATGCATATGCTGGTTTTCAATCTCATGAAGTGGCTGAGAAGAGTGGAATGTATTCAAATAATAATTGGTATCGAAGTTCAGGAATATTGAATGACATGGGGAACCAATCAAGCTTTGGCAATGACCCGATGCTGGGAAGTAGCTATATAGCTCAAACGGCTATGACTCAATATGGCTCACAGTACTTGCTAGATAGCTTGTTGACTAAGGACCCCGTAGTTACAAATTTTATATTTGAAGGTGTTTTCAATTTCCTATTCGAGGTGATGAATGATTCAAATGGACATCATCTTTTTGGGAAGCTAGTTCAGTCATGCAGCGATATTCAGTTAGGCCTCATTGTAGCAAAGATGACTTTGAATGTCCCATTGCTTATCAACATATCAGTCCGCAGATATGGCTCAAAATCGGTTCAGAGGCTGATCAAGGTGCTTGAGAAATCACCCTTGATTGACATTGTCATAGCAGCCCTATCCTGTGGATTTGAAGAACTGATGACCAATCGCTCAGGATCCTTTGTTATATTGAAGTGCTTAAACCTCCTCGATACTGAGAAAAATCAGAAACTATATGAAGCTGCTGTAAATCTTTGCATCCCATTGGCTCAGAATGAAAAGGGTGTTGGATGTATATACTTGAATGAGTTCATCACCAACAGTAAAGCTCCATATAGAGAGACACTCATGGGTGAGATCTCAAGCAAATCAAAATTCCTTTCTCAGGATCCTTCAGGGAACTTTGTTGTTCAGCACATCCTCGGACTCCACAATCCCATTTACGGTGAGCGCATATGTTTGGAGCTGAGAGAGCTTTATATACAGCTCTCGCAACAAAAAGGTGGCAGTCACGTTGTGGAGAAGTGCTTAAACTCATCCGGGATGGTTCATGTGGTTAGTGTTCTTCTCAAGTATGAAAAACTTTGGCAAGTTGCGAGGGATCAATATGGAAACTACGTGATCCAAACAGCATTGAAGACCACAAAACGCGCGAATAGTCCCCTTCATCAAATGCTTATATCGAAGCTCGTAGAGAATCGGAATGAACTTGTGATTGGATTTGGAAGGAAAGTGCTTGGTTTGATTGACAATGGGATCCCACTAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUF

Protein Analysis

492

Amino Acids

54.69

Weight (kDa)

7.09

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G01410 AT1G21620 AT1G35850 AT1G35850 AT5G59280 AT5G60110 AT5G60180 AT5G64490
fragaria_vesca FvH4_3g00680
malus_domestica MD05G1360200.v1.1
prunus_persica Prupe.4G007700_v2.0.a1
pyrus_communis pycom05g32520
rosa_chinensis RchiOBHm_Chr5g0000911
rosa_laevigata RLG00000030906
rosa_roxburghii Rroxscaffold_1G00075340
rosa_rugosa Rorug04G0387800 Rorug04G0387900.1
rosa_samantha Rh5AG007400 Rh5BG009500 Rh5CG008100 Rh5DG008100
rosa_wichuraiana Rw5G000770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 1359, 1361
AciI CCGC 1 cut(s) 763
AclWI GGATC 8 cut(s) 879, 892, 1091, 1104, 1317, 1324, 1459, 1472
AcsI RAATTY 2 cut(s) 598, 1082
AcuI CTGAAG 1 cut(s) 1086
AdeI CACNNNGTG 1 cut(s) 1225
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 5 cut(s) 505, 506, 634, 1093, 1151
AhlI ACTAGT 1 cut(s) 20
AjuI GAANNNNNNNTTGG 4 cut(s) 978, 1010, 1407, 1439
Alw26I GTCTC 1 cut(s) 1043
AlwI GGATC 8 cut(s) 879, 892, 1091, 1104, 1317, 1324, 1459, 1472
AlwNI CAGNNNCTG 1 cut(s) 793
AoxI GGCC 1 cut(s) 706
ApeKI GCWGC 4 cut(s) 302, 690, 839, 950
ApoI RAATTY 2 cut(s) 598, 1082
Asp700I GAANNNNTTC 2 cut(s) 424, 1016
AspLEI GCGC 2 cut(s) 1161, 1361
AspS9I GGNCC 2 cut(s) 32, 583
AsuC2I CCSGG 1 cut(s) 1249
AsuHPI GGTGA 5 cut(s) 649, 807, 1015, 1073, 1166
AsuII TTCGAA 1 cut(s) 234
AvaII GGWCC 2 cut(s) 32, 583
BamHI GGATCC 3 cut(s) 884, 1096, 1464
BbsI GAAGAC 3 cut(s) 87, 153, 1352
BbvI GCAGC 4 cut(s) 289, 702, 851, 937
BccI CCATC 1 cut(s) 1246
BceAI ACGGC 1 cut(s) 546
BclI TGATCA 1 cut(s) 795
BcnI CCSGG 1 cut(s) 1249
BcoDI GTCTC 1 cut(s) 1043
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 8 cut(s) 21, 152, 366, 371, 563, 677, 1472, 1477
BfmI CTRYAG 1 cut(s) 303
BglII AGATCT 1 cut(s) 1065
BisI GCNGC 4 cut(s) 303, 691, 840, 951
BlsI GCNGC 4 cut(s) 304, 692, 841, 952
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 1 cut(s) 1249
Bme18I GGWCC 2 cut(s) 32, 583
BmgT120I GGNCC 2 cut(s) 32, 583
BmiI GGNNCC 6 cut(s) 362, 476, 585, 886, 1098, 1466
BmrFI CCNGG 1 cut(s) 1249
BmsI GCATC 3 cut(s) 364, 492, 975
BpiI GAAGAC 3 cut(s) 87, 153, 1352
BplI GAGNNNNNCTC 2 cut(s) 1038, 1070
Bpu10I CCTNAGC 1 cut(s) 880
Bpu14I TTCGAA 1 cut(s) 234
BpuEI CTTGAG 3 cut(s) 827, 1054, 1262
BpuMI CCSGG 1 cut(s) 1249
BsaAI YACGTR 1 cut(s) 1327
BsaJI CCNNGG 1 cut(s) 1129
Bsc4I CCNNNNNNNGG 5 cut(s) 505, 506, 634, 1093, 1151
Bse3DI GCAATG 2 cut(s) 499, 740
BseDI CCNNGG 1 cut(s) 1129
BseGI GGATG 5 cut(s) 966, 1004, 1125, 1244, 1257
BseLI CCNNNNNNNGG 5 cut(s) 505, 506, 634, 1093, 1151
BseMI GCAATG 2 cut(s) 499, 740
BseMII CTCAG 6 cut(s) 399, 894, 915, 992, 1106, 1166
BseRI GAGGAG 1 cut(s) 905
BseXI GCAGC 4 cut(s) 289, 702, 851, 937
BseYI CCCAGC 1 cut(s) 505
Bsh1236I CGCG 2 cut(s) 1359, 1361
BshFI GGCC 1 cut(s) 708
BsiSI CCGG 1 cut(s) 1248
BslFI GGGAC 3 cut(s) 155, 722, 1353
BslI CCNNNNNNNGG 5 cut(s) 505, 506, 634, 1093, 1151
BsmAI GTCTC 1 cut(s) 1043
BsmFI GGGAC 3 cut(s) 155, 722, 1353
BsnI GGCC 1 cut(s) 708
Bsp119I TTCGAA 1 cut(s) 234
Bsp143I GATC 7 cut(s) 795, 884, 1065, 1096, 1309, 1329, 1464
BspACI CCGC 1 cut(s) 763
BspANI GGCC 1 cut(s) 708
BspCNI CTCAG 6 cut(s) 400, 893, 916, 991, 1105, 1167
BspFNI CGCG 2 cut(s) 1359, 1361
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 6 cut(s) 362, 476, 585, 886, 1098, 1466
BspMAI CTGCAG 1 cut(s) 307
BspPI GGATC 8 cut(s) 879, 892, 1091, 1104, 1317, 1324, 1459, 1472
BspQI GCTCTTC 1 cut(s) 148
BspT104I TTCGAA 1 cut(s) 234
BsrDI GCAATG 2 cut(s) 499, 740
BssECI CCNNGG 1 cut(s) 1129
BssMI GATC 7 cut(s) 795, 884, 1065, 1096, 1309, 1329, 1464
Bst4CI ACNGT 3 cut(s) 555, 1031, 1154
Bst6I CTCTTC 2 cut(s) 148, 407
BstBAI YACGTR 1 cut(s) 1327
BstBI TTCGAA 1 cut(s) 234
BstDEI CTNAG 7 cut(s) 408, 579, 880, 924, 978, 1092, 1175
BstENI CCTNNNNNAGG 2 cut(s) 632, 1091
BstF5I GGATG 5 cut(s) 966, 1004, 1125, 1244, 1257
BstFNI CGCG 2 cut(s) 1359, 1361
BstHHI GCGC 2 cut(s) 1161, 1361
BstKTI GATC 7 cut(s) 798, 887, 1068, 1099, 1312, 1332, 1467
BstMAI GTCTC 1 cut(s) 1043
BstMBI GATC 7 cut(s) 795, 884, 1065, 1096, 1309, 1329, 1464
BstMWI GCNNNNNNNGC 3 cut(s) 530, 771, 1180
BstSCI CCNGG 1 cut(s) 1247
BstSFI CTRYAG 1 cut(s) 303
BstUI CGCG 2 cut(s) 1359, 1361
BstV1I GCAGC 4 cut(s) 289, 702, 851, 937
BstV2I GAAGAC 3 cut(s) 87, 153, 1352
BstX2I RGATCY 4 cut(s) 884, 1065, 1096, 1464
BstYI RGATCY 4 cut(s) 884, 1065, 1096, 1464
BsuRI GGCC 1 cut(s) 708
BtsCI GGATG 5 cut(s) 966, 1004, 1125, 1244, 1257
CaiI CAGNNNCTG 1 cut(s) 793
CciI TCATGA 1 cut(s) 397
CfoI GCGC 2 cut(s) 1161, 1361
Cfr13I GGNCC 2 cut(s) 32, 583
Csp6I GTAC 1 cut(s) 556
CviAII CATG 7 cut(s) 118, 221, 398, 469, 687, 1057, 1259
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 7 cut(s) 408, 579, 880, 924, 978, 1092, 1175
DpnI GATC 7 cut(s) 797, 886, 1067, 1098, 1311, 1331, 1466
DpnII GATC 7 cut(s) 795, 884, 1065, 1096, 1309, 1329, 1464
DraIII CACNNNGTG 1 cut(s) 1225
Eam1104I CTCTTC 2 cut(s) 148, 407
EarI CTCTTC 2 cut(s) 148, 407
Eco147I AGGCCT 1 cut(s) 708
Eco47I GGWCC 2 cut(s) 32, 583
Eco57I CTGAAG 1 cut(s) 1086
EcoNI CCTNNNNNAGG 2 cut(s) 632, 1091
EcoO109I RGGNCCY 1 cut(s) 583
EcoT22I ATGCAT 1 cut(s) 379
FaeI CATG 7 cut(s) 121, 224, 401, 472, 690, 1060, 1262
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 3 cut(s) 155, 722, 1353
FatI CATG 7 cut(s) 117, 220, 397, 468, 686, 1056, 1258
FauNDI CATATG 2 cut(s) 379, 1163
FbaI TGATCA 1 cut(s) 795
Fnu4HI GCNGC 4 cut(s) 303, 691, 840, 951
FokI GGATG 5 cut(s) 953, 1011, 1112, 1231, 1264
Fsp4HI GCNGC 4 cut(s) 303, 691, 840, 951
FspBI CTAG 8 cut(s) 21, 152, 366, 371, 563, 677, 1472, 1477
GlaI GCGC 2 cut(s) 1160, 1360
GluI GCNGC 4 cut(s) 303, 691, 840, 951
GsaI CCCAGC 1 cut(s) 509
HaeIII GGCC 1 cut(s) 708
HapII CCGG 1 cut(s) 1248
HhaI GCGC 2 cut(s) 1161, 1361
Hin1II CATG 7 cut(s) 121, 224, 401, 472, 690, 1060, 1262
Hin6I GCGC 2 cut(s) 1159, 1359
HinP1I GCGC 2 cut(s) 1159, 1359
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 6 cut(s) 62, 125, 538, 647, 1134, 1405
HpaII CCGG 1 cut(s) 1248
HphI GGTGA 5 cut(s) 649, 807, 1015, 1073, 1166
Hpy166II GTNNAC 3 cut(s) 32, 115, 576
Hpy188I TCNGA 7 cut(s) 166, 199, 789, 936, 981, 1133, 1410
Hpy188III TCNNGA 5 cut(s) 74, 398, 453, 882, 1094
Hpy8I GTNNAC 3 cut(s) 32, 115, 576
HpyAV CCTTC 4 cut(s) 605, 1110, 1382, 1428
HpyCH4III ACNGT 3 cut(s) 555, 1031, 1154
HpyCH4IV ACGT 2 cut(s) 1221, 1326
HpyCH4V TGCA 4 cut(s) 305, 377, 690, 966
HpyF10VI GCNNNNNNNGC 3 cut(s) 530, 771, 1180
HpyF3I CTNAG 7 cut(s) 408, 579, 880, 924, 978, 1092, 1175
HpySE526I ACGT 2 cut(s) 1221, 1326
Hsp92II CATG 7 cut(s) 121, 224, 401, 472, 690, 1060, 1262
HspAI GCGC 2 cut(s) 1159, 1359
Ksp22I TGATCA 1 cut(s) 795
Kzo9I GATC 7 cut(s) 795, 884, 1065, 1096, 1309, 1329, 1464
LguI GCTCTTC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 1042, 1171
Lsp1109I GCAGC 4 cut(s) 289, 702, 851, 937
LweI GCATC 3 cut(s) 364, 492, 975
MaeI CTAG 8 cut(s) 21, 152, 366, 371, 563, 677, 1472, 1477
MaeII ACGT 2 cut(s) 1221, 1326
MaeIII GTNAC 3 cut(s) 293, 592, 1217
MalI GATC 7 cut(s) 797, 886, 1067, 1098, 1311, 1331, 1466
MboI GATC 7 cut(s) 795, 884, 1065, 1096, 1309, 1329, 1464
MboII GAAGA 9 cut(s) 89, 92, 135, 138, 153, 424, 872, 1265, 1357
MflI RGATCY 4 cut(s) 884, 1065, 1096, 1464
MluCI AATT 5 cut(s) 255, 436, 598, 622, 1082
MlyI GAGTC 3 cut(s) 119, 532, 1128
MmeI TCCRAC 2 cut(s) 200, 976
Mph1103I ATGCAT 1 cut(s) 379
MroXI GAANNNNTTC 2 cut(s) 424, 1016
MseI TTAA 2 cut(s) 908, 1238
MspI CCGG 1 cut(s) 1248
MspR9I CCNGG 1 cut(s) 1249
MvnI CGCG 2 cut(s) 1359, 1361
MwoI GCNNNNNNNGC 3 cut(s) 530, 771, 1180
NciI CCSGG 1 cut(s) 1249
NdeI CATATG 2 cut(s) 379, 1163
NdeII GATC 7 cut(s) 795, 884, 1065, 1096, 1309, 1329, 1464
NlaIII CATG 7 cut(s) 121, 224, 401, 472, 690, 1060, 1262
NlaIV GGNNCC 6 cut(s) 362, 476, 585, 886, 1098, 1466
NmuCI GTSAC 2 cut(s) 293, 1217
NsiI ATGCAT 1 cut(s) 379
NspV TTCGAA 1 cut(s) 234
PagI TCATGA 1 cut(s) 397
PceI AGGCCT 1 cut(s) 708
PciSI GCTCTTC 1 cut(s) 148
PdmI GAANNNNTTC 2 cut(s) 424, 1016
PfeI GAWTC 3 cut(s) 62, 647, 1405
PflFI GACNNNGTC 1 cut(s) 830
PfoI TCCNGGA 1 cut(s) 1247
PkrI GCNGC 4 cut(s) 304, 692, 841, 952
PleI GAGTC 3 cut(s) 119, 532, 1128
PpsI GAGTC 3 cut(s) 119, 532, 1128
Ppu21I YACGTR 1 cut(s) 1327
PpuMI RGGWCCY 1 cut(s) 583
Psp5II RGGWCCY 1 cut(s) 583
PspFI CCCAGC 1 cut(s) 505
PspN4I GGNNCC 6 cut(s) 362, 476, 585, 886, 1098, 1466
PspPI GGNCC 2 cut(s) 32, 583
PspPPI RGGWCCY 1 cut(s) 583
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 793
PsuI RGATCY 4 cut(s) 884, 1065, 1096, 1464
PsyI GACNNNGTC 1 cut(s) 830
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SapI GCTCTTC 1 cut(s) 148
SaqAI TTAA 2 cut(s) 908, 1238
SatI GCNGC 4 cut(s) 303, 691, 840, 951
Sau3AI GATC 7 cut(s) 795, 884, 1065, 1096, 1309, 1329, 1464
Sau96I GGNCC 2 cut(s) 32, 583
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 3 cut(s) 119, 532, 1128
ScrFI CCNGG 1 cut(s) 1249
SfaNI GCATC 3 cut(s) 364, 492, 975
SfcI CTRYAG 1 cut(s) 303
SfuI TTCGAA 1 cut(s) 234
SinI GGWCC 2 cut(s) 32, 583
SmlI CTYRAG 3 cut(s) 806, 1069, 1277
SmoI CTYRAG 3 cut(s) 806, 1069, 1277
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 5 cut(s) 255, 436, 598, 622, 1082
SseBI AGGCCT 1 cut(s) 708
SsiI CCGC 1 cut(s) 763
SspI AATATT 1 cut(s) 459
SspMI CTAG 8 cut(s) 21, 152, 366, 371, 563, 677, 1472, 1477
StuI AGGCCT 1 cut(s) 708
StyD4I CCNGG 1 cut(s) 1247
TaaI ACNGT 3 cut(s) 555, 1031, 1154
TaiI ACGT 2 cut(s) 1224, 1329
TaqI TCGA 5 cut(s) 234, 445, 633, 918, 1391
TasI AATT 5 cut(s) 255, 436, 598, 622, 1082
TatI WGTACW 1 cut(s) 555
TfiI GAWTC 3 cut(s) 62, 647, 1405
Tru1I TTAA 2 cut(s) 908, 1238
Tru9I TTAA 2 cut(s) 908, 1238
TseFI GTSAC 2 cut(s) 293, 1217
TseI GCWGC 4 cut(s) 302, 690, 839, 950
Tsp45I GTSAC 2 cut(s) 293, 1217
TspGWI ACGGA 1 cut(s) 89
Tth111I GACNNNGTC 1 cut(s) 830
VpaK11BI GGWCC 2 cut(s) 32, 583
XagI CCTNNNNNAGG 2 cut(s) 632, 1091
XapI RAATTY 2 cut(s) 598, 1082
XcmI CCANNNNNNNNNTGG 1 cut(s) 485
XmnI GAANNNNTTC 2 cut(s) 424, 1016
XspI CTAG 8 cut(s) 21, 152, 366, 371, 563, 677, 1472, 1477
ZrmI AGTACT 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.