AT1G02260

Arsenical pump membrane protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
440200 .. 442972
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G02260.2

Sequence Viewer

Length: 1509 bp
ATGGCAATGGCTCCAGTAATAAAGCTGGTCTTAGGTTCAGTTGCCTTTGCCATTTTCTGGATATTAGCAGTGTTTCCCTCTGTACCATTCCTACCAATTGGTCGAACCGCCGGTTCTCTGTTCGGTGCAATGCTAATGGTTATCTTCCAAGTGATAACCCCGGAACAAGCTTATGCAGCCATTGATCTCCCGATACTCGGTCTTCTCTTTGGAACGATGGTTGTTAGTATATACCTTGAGAGAGCTGATATGTTCAAGTACTTAGGCACATTGCTTTCGTGGAAAAGCAGAGGTCCGAAAGACTTGCTATGTAGAGTCTGTCTTGTTTCCGCTGTTTCAAGCGCTCTGTTTACTAACGATACATCTTGTGTGGTTTTAACCGAGTTTGTGTTGAAGATCGCTAGGCAAAAGAATCTCCCGCCTCACCCGTTTTTGCTCGCTTTAGCCACGAGTGCGAATATTGGTTCTTCTGCTACTCCCATTGGGAATCCGCAGAATCTTGTTATTGCGGTTCAAAGCAAGATCCCGTTTTGGGAGTTTCTTCTTGGTGTTTTTCCTGCGATGATTGTTGGTATTACCGTTAACGCTATGCTTCTTCTCGGTATGTATTGGCGGTTATTGTCAGATCATAAAGAGGATGAAGAAGAAGTACAAAATGCTGATTCTGAAGTTGTTGCCCAAGAAGATGTCCAATCTCATAGGTTCTCGCCAGCTACATTTTCGCCAGTCTCATCCGAAGATTCGAACTTGAGAATGGATGCCGCCGAGACTCTCAGAAACAGAGCGGGTTCAGCGGGTGAGAGCGAGTTAATAAGCTGCAATTCAAATGCGTCGAGAGAACAACACAACGACGCAGAGTCTCAAGGAGAGAGCAATAATACCAACAATATGTTCCAGACCAAGAGATGGAGAAGAGTTTTATGGAAATCAAGTGTTTATTTCATCACATTAGGAATGCTAATATCTCTGCTTATGGGTTTAAACATGTCGTGGACCGCAATTACCGCGGCTCTAGCACTCGTGGTTCTTGATTTCAAAGACGCAAGGCCGTCTCTCGAGAAGGTATCGTATTCGCTTTTGATCTTTTTCTGCGGGATGTTCATAACCGTTGATGGATTCAACAAAACTGGTATCCCTACCGCTCTATGGGACCTAATGGAGCCATATGCCAAAATTGATCAAGCCAAAGGAATCGCGGTTCTAGCAGTTGTGATTCTTGTCCTCTCCAATGTAGCCTCTAATGTACCAACCGTGCTTTTGTTGGGAGCAAGAGTGGCGGCATCAGCGATGGGGAGGGAGGAGGAGAAGAAGGCGTGGTTGTTGCTGGCGTGGGTGAGCACAGTGGCTGGAAACTTGACGTTGCTTGGTTCAGCAGCAAACCTGATAGTGTGTGAGCAAGCTCGTAGAGCAGTGAGCCATGGATACACTCTCACTTTCACTAAACATTTCAAATTCGGTTTGCCTTCAACACTCATCGTCACTGCGATTGGTCTCTTCCTTATCAAGTAA

Protein Analysis

502

Amino Acids

54.72

Weight (kDa)

7.01

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 21 - 449 8.5e-95 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 57, 906
AccBSI CCGCTC 2 cut(s) 785, 1142
AccII CGCG 2 cut(s) 1007, 1196
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 1 cut(s) 1451
AcuI CTGAAG 1 cut(s) 687
AfaI GTAC 4 cut(s) 84, 260, 651, 1245
AfeI AGCGCT 1 cut(s) 343
AfiI CCNNNNNNNGG 5 cut(s) 57, 197, 532, 906, 1146
AflIII ACRYGT 1 cut(s) 984
AgsI TTSAA 9 cut(s) 256, 339, 394, 515, 825, 1036, 1120, 1450, 1467
AhdI GACNNNNNGTC 1 cut(s) 856
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
AloI GAACNNNNNNTCC 2 cut(s) 1182, 1214
AluBI AGCT 6 cut(s) 25, 170, 245, 713, 816, 1400
AluI AGCT 6 cut(s) 25, 170, 245, 713, 816, 1400
Alw21I GWGCWC 1 cut(s) 1340
Alw26I GTCTC 5 cut(s) 733, 761, 864, 1056, 1496
AlwI GGATC 1 cut(s) 517
AlwNI CAGNNNCTG 1 cut(s) 1346
Ama87I CYCGRG 1 cut(s) 1055
Aor51HI AGCGCT 1 cut(s) 343
AoxI GGCC 1 cut(s) 1046
ApeKI GCWGC 3 cut(s) 176, 816, 1373
ApoI RAATTY 1 cut(s) 1451
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 3 cut(s) 293, 993, 1150
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 3 cut(s) 416, 809, 1345
AsuII TTCGAA 1 cut(s) 743
AvaI CYCGRG 1 cut(s) 1055
AvaII GGWCC 3 cut(s) 293, 993, 1150
BarI GAAGNNNNNNTAC 2 cut(s) 633, 665
BauI CACGAG 2 cut(s) 448, 1019
BbsI GAAGAC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 1340
BbvI GCAGC 3 cut(s) 188, 803, 1385
BccI CCATC 4 cut(s) 211, 900, 1106, 1282
BceAI ACGGC 1 cut(s) 1033
BcgI CGANNNNNNTGC 2 cut(s) 286, 320
BciVI GTATCC 2 cut(s) 1142, 1415
BclI TGATCA 1 cut(s) 1177
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 5 cut(s) 733, 761, 864, 1056, 1496
BfaI CTAG 3 cut(s) 402, 1013, 1202
BfoI RGCGCY 1 cut(s) 345
BfuI GTATCC 2 cut(s) 1142, 1415
BisI GCNGC 6 cut(s) 177, 762, 817, 1008, 1278, 1374
BlsI GCNGC 6 cut(s) 178, 763, 818, 1009, 1279, 1375
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 3 cut(s) 293, 993, 1150
BmeRI GACNNNNNGTC 1 cut(s) 856
BmeT110I CYCGRG 1 cut(s) 1055
BmgT120I GGNCC 3 cut(s) 293, 993, 1150
BmiI GGNNCC 3 cut(s) 12, 1151, 1161
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 2 cut(s) 748, 1289
BpiI GAAGAC 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 743
BpuEI CTTGAG 3 cut(s) 257, 769, 846
BpuMI CCSGG 1 cut(s) 161
BsaI GGTCTC 1 cut(s) 1496
BsaJI CCNNGG 3 cut(s) 159, 1005, 1417
BsaXI ACNNNNNCTCC 2 cut(s) 1257, 1287
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 197, 532, 906, 1146
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 3 cut(s) 14, 725, 1132
Bse3DI GCAATG 3 cut(s) 12, 135, 269
BseDI CCNNGG 3 cut(s) 159, 1005, 1417
BseGI GGATG 4 cut(s) 643, 731, 763, 1101
BseLI CCNNNNNNNGG 5 cut(s) 57, 197, 532, 906, 1146
BseMI GCAATG 3 cut(s) 12, 135, 269
BseMII CTCAG 1 cut(s) 787
BseNI ACTGG 3 cut(s) 14, 725, 1132
BseRI GAGGAG 2 cut(s) 1313, 1316
BseXI GCAGC 3 cut(s) 188, 803, 1385
Bsh1236I CGCG 2 cut(s) 1007, 1196
BshFI GGCC 1 cut(s) 1048
BsiHKAI GWGCWC 1 cut(s) 1340
BsiHKCI CYCGRG 1 cut(s) 1055
BsiSI CCGG 2 cut(s) 111, 161
BslFI GGGAC 1 cut(s) 1163
BslI CCNNNNNNNGG 5 cut(s) 57, 197, 532, 906, 1146
BsmAI GTCTC 5 cut(s) 733, 761, 864, 1056, 1496
BsmBI CGTCTC 1 cut(s) 1056
BsmFI GGGAC 1 cut(s) 1163
BsmI GAATGC 1 cut(s) 960
BsnI GGCC 1 cut(s) 1048
Bso31I GGTCTC 1 cut(s) 1496
BsoBI CYCGRG 1 cut(s) 1055
Bsp119I TTCGAA 1 cut(s) 743
Bsp1286I GDGCHC 1 cut(s) 1340
Bsp143I GATC 6 cut(s) 184, 396, 522, 625, 1080, 1177
Bsp19I CCATGG 1 cut(s) 1417
BspANI GGCC 1 cut(s) 1048
BspCNI CTCAG 1 cut(s) 786
BspFNI CGCG 2 cut(s) 1007, 1196
BspLI GGNNCC 3 cut(s) 12, 1151, 1161
BspPI GGATC 1 cut(s) 517
BspT104I TTCGAA 1 cut(s) 743
BspTNI GGTCTC 1 cut(s) 1496
BsrBI CCGCTC 2 cut(s) 785, 1142
BsrDI GCAATG 3 cut(s) 12, 135, 269
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 3 cut(s) 14, 725, 1132
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 3 cut(s) 159, 1005, 1417
BssMI GATC 6 cut(s) 184, 396, 522, 625, 1080, 1177
BssSI CACGAG 2 cut(s) 448, 1019
BssT1I CCWWGG 1 cut(s) 1417
Bst2BI CACGAG 2 cut(s) 448, 1019
Bst4CI ACNGT 4 cut(s) 580, 1108, 1252, 1342
Bst6I CTCTTC 2 cut(s) 907, 1499
BstBI TTCGAA 1 cut(s) 743
BstC8I GCNNGC 4 cut(s) 438, 711, 1326, 1398
BstDEI CTNAG 3 cut(s) 31, 262, 773
BstDSI CCRYGG 2 cut(s) 1005, 1417
BstF5I GGATG 4 cut(s) 643, 731, 763, 1101
BstFNI CGCG 2 cut(s) 1007, 1196
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 6 cut(s) 187, 399, 525, 628, 1083, 1180
BstMAI GTCTC 5 cut(s) 733, 761, 864, 1056, 1496
BstMBI GATC 6 cut(s) 184, 396, 522, 625, 1080, 1177
BstMWI GCNNNNNNNGC 9 cut(s) 176, 452, 791, 1004, 1013, 1202, 1274, 1283, 1406
BstNSI RCATGY 1 cut(s) 988
BstSCI CCNGG 1 cut(s) 159
BstUI CGCG 2 cut(s) 1007, 1196
BstV1I GCAGC 3 cut(s) 188, 803, 1385
BstV2I GAAGAC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 522
BstYI RGATCY 1 cut(s) 522
BsuI GTATCC 2 cut(s) 1142, 1415
BsuRI GGCC 1 cut(s) 1048
BtgI CCRYGG 2 cut(s) 1005, 1417
BtgZI GCGATG 2 cut(s) 575, 1301
BtsCI GGATG 4 cut(s) 643, 731, 763, 1101
BtsI GCAGTG 3 cut(s) 75, 1416, 1479
BtsIMutI CAGTG 4 cut(s) 75, 1347, 1416, 1479
Cac8I GCNNGC 4 cut(s) 438, 711, 1326, 1398
CaiI CAGNNNCTG 1 cut(s) 1346
CfoI GCGC 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 293, 993, 1150
Cfr42I CCGCGG 1 cut(s) 1008
CseI GACGC 3 cut(s) 819, 860, 1049
Csp6I GTAC 4 cut(s) 83, 259, 650, 1244
CviAII CATG 2 cut(s) 985, 1418
CviQI GTAC 4 cut(s) 83, 259, 650, 1244
DdeI CTNAG 3 cut(s) 31, 262, 773
DpnI GATC 6 cut(s) 186, 398, 524, 627, 1082, 1179
DpnII GATC 6 cut(s) 184, 396, 522, 625, 1080, 1177
DraI TTTAAA 1 cut(s) 981
DriI GACNNNNNGTC 1 cut(s) 856
Eam1104I CTCTTC 2 cut(s) 907, 1499
Eam1105I GACNNNNNGTC 1 cut(s) 856
EarI CTCTTC 2 cut(s) 907, 1499
Eco130I CCWWGG 1 cut(s) 1417
Eco31I GGTCTC 1 cut(s) 1496
Eco47I GGWCC 3 cut(s) 293, 993, 1150
Eco47III AGCGCT 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 687
Eco88I CYCGRG 1 cut(s) 1055
EcoO109I RGGNCCY 1 cut(s) 1150
EcoT14I CCWWGG 1 cut(s) 1417
ErhI CCWWGG 1 cut(s) 1417
Esp3I CGTCTC 1 cut(s) 1056
FaeI CATG 2 cut(s) 988, 1421
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 1 cut(s) 1163
FatI CATG 2 cut(s) 984, 1417
FauI CCCGC 4 cut(s) 426, 778, 787, 1085
FauNDI CATATG 1 cut(s) 1165
FbaI TGATCA 1 cut(s) 1177
Fnu4HI GCNGC 6 cut(s) 177, 762, 817, 1008, 1278, 1374
FokI GGATG 4 cut(s) 650, 718, 770, 1108
Fsp4HI GCNGC 6 cut(s) 177, 762, 817, 1008, 1278, 1374
FspBI CTAG 3 cut(s) 402, 1013, 1202
GlaI GCGC 1 cut(s) 343
GluI GCNGC 6 cut(s) 177, 762, 817, 1008, 1278, 1374
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 1 cut(s) 1048
HapII CCGG 2 cut(s) 111, 161
HgaI GACGC 3 cut(s) 819, 860, 1049
HhaI GCGC 1 cut(s) 344
Hin1II CATG 2 cut(s) 988, 1421
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 168
HpaI GTTAAC 1 cut(s) 583
HpaII CCGG 2 cut(s) 111, 161
HphI GGTGA 3 cut(s) 416, 809, 1345
Hpy166II GTNNAC 3 cut(s) 351, 583, 993
Hpy188I TCNGA 5 cut(s) 297, 625, 667, 736, 776
Hpy188III TCNNGA 7 cut(s) 58, 190, 834, 895, 1028, 1055, 1057
Hpy8I GTNNAC 3 cut(s) 351, 583, 993
Hpy99I CGWCG 2 cut(s) 835, 854
HpyAV CCTTC 3 cut(s) 1054, 1303, 1473
HpyCH4III ACNGT 4 cut(s) 580, 1108, 1252, 1342
HpyCH4IV ACGT 1 cut(s) 1358
HpyCH4V TGCA 3 cut(s) 128, 176, 819
HpyF10VI GCNNNNNNNGC 9 cut(s) 176, 452, 791, 1004, 1013, 1202, 1274, 1283, 1406
HpyF3I CTNAG 3 cut(s) 31, 262, 773
HpySE526I ACGT 1 cut(s) 1358
Hsp92II CATG 2 cut(s) 988, 1421
HspAI GCGC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 1177
KspAI GTTAAC 1 cut(s) 583
KspI CCGCGG 1 cut(s) 1008
Kzo9I GATC 6 cut(s) 184, 396, 522, 625, 1080, 1177
LmnI GCTCC 3 cut(s) 16, 1159, 1265
Lsp1109I GCAGC 3 cut(s) 188, 803, 1385
LweI GCATC 2 cut(s) 748, 1289
MaeI CTAG 3 cut(s) 402, 1013, 1202
MaeII ACGT 1 cut(s) 1358
MaeIII GTNAC 1 cut(s) 1477
MalI GATC 6 cut(s) 186, 398, 524, 627, 1082, 1179
MbiI CCGCTC 2 cut(s) 785, 1142
MboI GATC 6 cut(s) 184, 396, 522, 625, 1080, 1177
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 1 cut(s) 522
MhlI GDGCHC 1 cut(s) 1340
MluCI AATT 5 cut(s) 96, 820, 999, 1173, 1451
MlyI GAGTC 3 cut(s) 324, 763, 866
MnlI CCTC 9 cut(s) 88, 284, 432, 628, 1232, 1246, 1287, 1291, 1294
MseI TTAA 4 cut(s) 377, 582, 809, 980
MspA1I CMGCKG 3 cut(s) 332, 794, 1007
MspI CCGG 2 cut(s) 111, 161
MspR9I CCNGG 1 cut(s) 161
MssI GTTTAAAC 1 cut(s) 981
MunI CAATTG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 960
MvnI CGCG 2 cut(s) 1007, 1196
MwoI GCNNNNNNNGC 9 cut(s) 176, 452, 791, 1004, 1013, 1202, 1274, 1283, 1406
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 1417
NdeI CATATG 1 cut(s) 1165
NdeII GATC 6 cut(s) 184, 396, 522, 625, 1080, 1177
NlaIII CATG 2 cut(s) 988, 1421
NlaIV GGNNCC 3 cut(s) 12, 1151, 1161
NmeAIII GCCGAG 1 cut(s) 790
NmuCI GTSAC 1 cut(s) 1477
NspI RCATGY 1 cut(s) 988
NspV TTCGAA 1 cut(s) 743
PaeR7I CTCGAG 1 cut(s) 1055
PciI ACATGT 1 cut(s) 984
PctI GAATGC 1 cut(s) 960
PfeI GAWTC 8 cut(s) 412, 487, 496, 662, 740, 1116, 1191, 1213
PflMI CCANNNNNTGG 2 cut(s) 57, 906
PkrI GCNGC 6 cut(s) 178, 763, 818, 1009, 1279, 1375
PleI GAGTC 3 cut(s) 323, 763, 865
PmeI GTTTAAAC 1 cut(s) 981
PpsI GAGTC 3 cut(s) 323, 763, 865
PpuMI RGGWCCY 1 cut(s) 1150
PscI ACATGT 1 cut(s) 984
Psp5II RGGWCCY 1 cut(s) 1150
PspN4I GGNNCC 3 cut(s) 12, 1151, 1161
PspPI GGNCC 3 cut(s) 293, 993, 1150
PspPPI RGGWCCY 1 cut(s) 1150
PstNI CAGNNNCTG 1 cut(s) 1346
PsuI RGATCY 1 cut(s) 522
RsaI GTAC 4 cut(s) 84, 260, 651, 1245
RsaNI GTAC 4 cut(s) 83, 259, 650, 1244
SacII CCGCGG 1 cut(s) 1008
SaqAI TTAA 4 cut(s) 377, 582, 809, 980
SatI GCNGC 6 cut(s) 177, 762, 817, 1008, 1278, 1374
Sau3AI GATC 6 cut(s) 184, 396, 522, 625, 1080, 1177
Sau96I GGNCC 3 cut(s) 293, 993, 1150
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 3 cut(s) 324, 763, 866
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 1340
SfaNI GCATC 2 cut(s) 748, 1289
Sfr274I CTCGAG 1 cut(s) 1055
Sfr303I CCGCGG 1 cut(s) 1008
SfuI TTCGAA 1 cut(s) 743
SgrBI CCGCGG 1 cut(s) 1008
SinI GGWCC 3 cut(s) 293, 993, 1150
SlaI CTCGAG 1 cut(s) 1055
SmlI CTYRAG 4 cut(s) 236, 748, 861, 1055
SmoI CTYRAG 4 cut(s) 236, 748, 861, 1055
Sse9I AATT 5 cut(s) 96, 820, 999, 1173, 1451
SspI AATATT 1 cut(s) 460
SspMI CTAG 3 cut(s) 402, 1013, 1202
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 1417
TaaI ACNGT 4 cut(s) 580, 1108, 1252, 1342
TaiI ACGT 1 cut(s) 1361
TaqI TCGA 4 cut(s) 103, 743, 833, 1056
TaqII GACCGA 1 cut(s) 188
TasI AATT 5 cut(s) 96, 820, 999, 1173, 1451
TatI WGTACW 2 cut(s) 258, 649
TauI GCSGC 3 cut(s) 764, 1010, 1280
TfiI GAWTC 8 cut(s) 412, 487, 496, 662, 740, 1116, 1191, 1213
Tru1I TTAA 4 cut(s) 377, 582, 809, 980
Tru9I TTAA 4 cut(s) 377, 582, 809, 980
TscAI CASTG 4 cut(s) 75, 1347, 1416, 1486
TseFI GTSAC 1 cut(s) 1477
TseI GCWGC 3 cut(s) 176, 816, 1373
Tsp45I GTSAC 1 cut(s) 1477
TspDTI ATGAA 3 cut(s) 654, 931, 1090
TspRI CASTG 4 cut(s) 75, 1347, 1416, 1486
Van91I CCANNNNNTGG 2 cut(s) 57, 906
VpaK11BI GGWCC 3 cut(s) 293, 993, 1150
XapI RAATTY 1 cut(s) 1451
XceI RCATGY 1 cut(s) 988
XhoI CTCGAG 1 cut(s) 1055
XspI CTAG 3 cut(s) 402, 1013, 1202
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.