Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004666

Physical Location & Seq

Genomic Coordinates Reverse (-)

21897936 .. 21898828

Gene Structure 893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29922.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCAATGGCTTCTTCTGTCAAAGTAGTTCTAGGCTCAATTGCCTTTGCAATCTTCTGGATTTTGGCGGTGTTTCCAGCTGTCCCTTTTCTTCCCATTGGGAGGACAGCAGGGTCTCTTTTGGGGGCAATGCTGATGGTTGTGTTCCGAGTCCTAACTCCGGATCAAGCCTACGCTGCTATTGATCTCCCAATTCTTGGCCTTTTGTTTGGGACAATGGTTGTAAGTATATATCTTGAAAGAGCAGATATGTTCAAGTATTTGGGGAAGTTGCTCTTATGGAAAAGCCAAGGAGCAAAGGACTTGATATGTAGGGTCTGTTTGATTTCTGCCATTTCAAGTGCTCTTTTCACCAATGACACCTCTTGTTTGGTTTTGACTGAGTTTGTACTAAAAGTTGCAAGACAACATAACTTACCGCCTCATCCGTTCCTGCTTGCACTTGCTTCCAGTGCAAATATTGGGTCTGCAGCTACCCCAATTGGCAATCCTCAGAATCTGGTTATAGCTGTTCAGAGTAACATTCCTTTCGGAAAGTTTGTTGTAGGAATTTTCCCTGCAATGCTTGTAGGAGTTTGTGTGAATGCTTTACTTCTTTTGTGTATGTACTGGAAGTTGTTGTCTATCCAGAAGGATGTGGAAGACGCAACTGGAGATGTTGTCGCGGAGGAGGATGTGAGTTCTCATCGGTTTTCACCAGCCACACTGTCACATTGTGCATCCTTCAACGCTGAGGACTTGAACTCTAGACTACTAGAAGCCAGGAGTGTGCTAGTTTCTCCAGTTAAGTTCAAGTGCATCGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0008150 GO:0008324 GO:0008490 GO:0008509 GO:0015075 GO:0015103 GO:0015105 GO:0015291 GO:0015318 GO:0015399 GO:0015405 GO:0015446 GO:0015698 GO:0015700 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043225 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098655 GO:0098656 GO:0098660 GO:0099131 GO:0099132 GO:0099133 GO:1901683 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

270

Amino Acids

28.97

Weight (kDa)

6.88

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_sulph_symp	PF00939	18 - 208	1.2e-06	Sodium:sulfate symporter transmembrane region
CitMHS	PF03600	21 - 223	5.2e-57	Citrate transporter
ArsB	PF02040	73 - 232	9.6e-06	Arsenical pump membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02260 AT1G02260
fragaria_vesca	FvH4_7g29922 FvH4_7g29950
malus_domestica	MD07G1275000.v1.1 MD07G1275200.v1.1 MD07G1275300.v1.1 MD07G1275500.v1.1 MD07G1275600.v1.1 MD07G1275700.v1.1
prunus_persica	Prupe.2G298200_v2.0.a1 Prupe.2G298200_v2.0.a1 Prupe.2G298200_v2.0.a1
pyrus_communis	pycom07g25110
rosa_chinensis	RchiOBHm_Chr1g0377891 RchiOBHm_Chr1g0377911
rosa_laevigata	RLG00000026487 RLG00000026488
rosa_multiflora	Rmu_sc0004611.1_g000001 Rmu_sc0004824.1_g000012 Rmu_sc0004824.1_g000015
rosa_roxburghii	Rroxscaffold_4G00280950 Rroxscaffold_4G00280970
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG426100 Rh1AG426300 Rh1BG383000 Rh1CG396800 Rh1DG414000
rosa_wichuraiana	Rw1G037220 Rw1G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	112
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccII	CGCG	1 cut(s)	665
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	3 cut(s)	68, 419, 665
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	549
AdeI	CACNNNGTG	1 cut(s)	716
AfaI	GTAC	2 cut(s)	390, 608
AfiI	CCNNNNNNNGG	3 cut(s)	102, 160, 197
AgsI	TTSAA	6 cut(s)	239, 256, 339, 727, 742, 793
AjnI	CCWGG	1 cut(s)	761
AluBI	AGCT	3 cut(s)	80, 473, 509
AluI	AGCT	3 cut(s)	80, 473, 509
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	1 cut(s)	171
AlwNI	CAGNNNCTG	1 cut(s)	499
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	176, 470
ApoI	RAATTY	1 cut(s)	549
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AsuHPI	GGTGA	2 cut(s)	343, 687
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	346
BbvCI	CCTCAGC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	163, 482
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	763
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	4 cut(s)	32, 747, 755, 773
BfmI	CTRYAG	1 cut(s)	468
BisI	GCNGC	2 cut(s)	177, 471
BlsI	GCNGC	2 cut(s)	178, 472
Bme1390I	CCNGG	1 cut(s)	763
BmrFI	CCNGG	1 cut(s)	763
BmsI	GCATC	1 cut(s)	728
BpiI	GAAGAC	1 cut(s)	648
BpmI	CTGGAG	2 cut(s)	672, 765
Bpu10I	CCTNAGC	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	160
BsaXI	ACNNNNNCTCC	4 cut(s)	564, 594, 645, 675
Bsc4I	CCNNNNNNNGG	3 cut(s)	102, 160, 197
Bse1I	ACTGG	4 cut(s)	450, 614, 655, 782
Bse3DI	GCAATG	3 cut(s)	12, 135, 567
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	763
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	4 cut(s)	424, 640, 679, 719
BseLI	CCNNNNNNNGG	3 cut(s)	102, 160, 197
BseMI	GCAATG	3 cut(s)	12, 135, 567
BseMII	CTCAG	3 cut(s)	372, 506, 723
BseNI	ACTGG	4 cut(s)	450, 614, 655, 782
BseRI	GAGGAG	1 cut(s)	683
BseXI	GCAGC	2 cut(s)	163, 482
Bsh1236I	CGCG	1 cut(s)	665
BshFI	GGCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	2 cut(s)	68, 226
BslI	CCNNNNNNNGG	3 cut(s)	102, 160, 197
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	68, 226
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	163, 184
BspACI	CCGC	3 cut(s)	68, 419, 665
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	3 cut(s)	373, 505, 724
BspEI	TCCGGA	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	665
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	3 cut(s)	12, 135, 567
BsrI	ACTGG	4 cut(s)	450, 614, 655, 782
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	2 cut(s)	163, 184
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	763
Bst4CI	ACNGT	1 cut(s)	708
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	381, 492, 732
BstF5I	GGATG	4 cut(s)	424, 640, 679, 719
BstFNI	CGCG	1 cut(s)	665
BstKTI	GATC	2 cut(s)	166, 187
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	2 cut(s)	163, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 452
BstNI	CCWGG	1 cut(s)	763
BstSCI	CCNGG	1 cut(s)	761
BstSFI	CTRYAG	1 cut(s)	468
BstUI	CGCG	1 cut(s)	665
BstV1I	GCAGC	2 cut(s)	163, 482
BstV2I	GAAGAC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	4 cut(s)	424, 640, 679, 719
BtsIMutI	CAGTG	2 cut(s)	457, 704
Cac8I	GCNNGC	1 cut(s)	438
CaiI	CAGNNNCTG	1 cut(s)	499
CseI	GACGC	1 cut(s)	653
Csp6I	GTAC	2 cut(s)	389, 607
CviQI	GTAC	2 cut(s)	389, 607
DdeI	CTNAG	3 cut(s)	381, 492, 732
DpnI	GATC	2 cut(s)	165, 186
DpnII	GATC	2 cut(s)	163, 184
DraIII	CACNNNGTG	1 cut(s)	716
DrdI	GACNNNNNNGTC	1 cut(s)	112
DseDI	GACNNNNNNGTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	761
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaiI	YATR	8 cut(s)	230, 232, 251, 280, 310, 411, 506, 605
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	2 cut(s)	68, 226
Fnu4HI	GCNGC	2 cut(s)	177, 471
FokI	GGATG	4 cut(s)	411, 647, 686, 706
Fsp4HI	GCNGC	2 cut(s)	177, 471
FspBI	CTAG	4 cut(s)	32, 747, 755, 773
GluI	GCNGC	2 cut(s)	177, 471
GsuI	CTGGAG	2 cut(s)	672, 765
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	653
HinfI	GANTC	2 cut(s)	150, 496
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	2 cut(s)	343, 687
Hpy188I	TCNGA	4 cut(s)	149, 495, 516, 533
Hpy188III	TCNNGA	5 cut(s)	58, 161, 236, 628, 747
HpyAV	CCTTC	2 cut(s)	625, 733
HpyCH4III	ACNGT	1 cut(s)	708
HpyCH4V	TGCA	8 cut(s)	50, 401, 440, 455, 470, 560, 719, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 452
HpyF3I	CTNAG	3 cut(s)	381, 492, 732
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	163, 184
LmnI	GCTCC	1 cut(s)	293
Lsp1109I	GCAGC	2 cut(s)	163, 482
LweI	GCATC	1 cut(s)	728
MaeI	CTAG	4 cut(s)	32, 747, 755, 773
MaeIII	GTNAC	2 cut(s)	518, 708
MalI	GATC	2 cut(s)	165, 186
MboI	GATC	2 cut(s)	163, 184
MboII	GAAGA	4 cut(s)	6, 46, 83, 653
MfeI	CAATTG	2 cut(s)	39, 480
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	4 cut(s)	39, 192, 480, 549
MlyI	GAGTC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	96, 373, 432, 501, 661, 664, 727
MroI	TCCGGA	1 cut(s)	160
MseI	TTAA	1 cut(s)	786
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	763
MunI	CAATTG	2 cut(s)	39, 480
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	763
MvnI	CGCG	1 cut(s)	665
MwoI	GCNNNNNNNGC	2 cut(s)	176, 452
NdeII	GATC	2 cut(s)	163, 184
NmuCI	GTSAC	1 cut(s)	708
PctI	GAATGC	1 cut(s)	589
PfeI	GAWTC	1 cut(s)	496
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	178, 472
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	761
PspGI	CCWGG	1 cut(s)	761
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	2 cut(s)	390, 608
RsaNI	GTAC	2 cut(s)	389, 607
SaqAI	TTAA	1 cut(s)	786
SatI	GCNGC	2 cut(s)	177, 471
Sau3AI	GATC	2 cut(s)	163, 184
SchI	GAGTC	1 cut(s)	159
ScrFI	CCNGG	1 cut(s)	763
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	4 cut(s)	82, 365, 475, 511
SfaNI	GCATC	1 cut(s)	728
SfcI	CTRYAG	1 cut(s)	468
Sse9I	AATT	4 cut(s)	39, 192, 480, 549
SsiI	CCGC	3 cut(s)	68, 419, 665
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	4 cut(s)	32, 747, 755, 773
StyD4I	CCNGG	1 cut(s)	761
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	708
TaqI	TCGA	1 cut(s)	801
TasI	AATT	4 cut(s)	39, 192, 480, 549
TatI	WGTACW	2 cut(s)	388, 606
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	1 cut(s)	786
Tru9I	TTAA	1 cut(s)	786
TscAI	CASTG	2 cut(s)	457, 711
TseFI	GTSAC	1 cut(s)	708
TseI	GCWGC	2 cut(s)	176, 470
Tsp45I	GTSAC	1 cut(s)	708
TspGWI	ACGGA	1 cut(s)	417
TspRI	CASTG	2 cut(s)	457, 711
Van91I	CCANNNNNTGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	549
XbaI	TCTAGA	1 cut(s)	746
XspI	CTAG	4 cut(s)	32, 747, 755, 773

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.