Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004666

Physical Location & Seq

Genomic Coordinates Forward (+)

65469151 .. 65472670

Gene Structure 3520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG426100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCATTGGCTTCTTCTGTTAAAGTGGTTCTAGGCTCAATTGCCTTTGCAACATTCTGGATATTGGCGGTGTTTCCGGCTGTCCCTTTTCTGCCAATTGGGAGGACTGCAGGGTCTCTTTTAGGAGCAATGCTGATGGTTCTGTTCCGAGTCCTAACTCCGGATCAAGCCTACGCTGCAATTGATCTCCCAATCCTTGGCCTTTTGTTTGGGACAATGGTTGTGAGTATCTATCTTGAAAGAGCAGATATGTTCAAGTATTTGGGCAAGTTGCTCTTGTGGAAAAGCAAAGGAGCAAAGGACTTGATATGTAGAGTCTGTTTGATTTCTGCCATTTCAAGTGCTCTTTTCACCAATGACACCTCCTGTGTGGTTTTGACTGAGTTTGTACTAAAAGTTGCAAGACAACACAACTTACCGCCTCATCCATTCCTGCTTGCACTTGCCTCAAGTGCAAATATTGGGTCTGCAGCAACCCCAATCGGCAATCCTCAGAACCTGGTTATAGCTGTTCAGAGTAAAATTCCTTTTGGAAAGTTTGTTTTAGGAATTTTGCCTGCAATGCTTGTAGGAGTTTGTGTGAATGCTTTGCTTCTTTTGTGTATGTTCTGGAAGTTGTTGTCTATCCAGAAGGATGTGGAAGACGCAGCTGGAGAGGTTGTCGGGGAGGAGGATATGATTTCTCACCGGTTTTCACCAGCCACACTGTCACATAGTGCATCCTTCAACTCTCAGGAGCTGAACTCCAGACTAGAAGCCAAGAGTGGGATAAGTTCTCCAGTTGTTGATAACCTTAGGAACCGTGTGCCTTCAGCTGAGACTGAGATCACGAGGGTTTATAGTGCTGGTGCTTTTGAGTCTGCAAGAAATTCAAGTGCGTCAAAGACTGAGGAGACAAATGATGTAGCTTCCCAGAAAAAGGAGGAACCAGTTGCTCTGAAAAGGACTAGATCAAAGGAAAAACTTGGAGATAATTGTACTACTATAGAGTCTTTGGAAGGAAAGGAAAATTTGACCACAAAATGGAGAAGGATGTTTTGGAAATCTGGCGTTTATTTTGTTACGATAGGAATGTTGGTTGCGCTTCTTATGGGCCTGAACATGTCATGGTGCGCAATTACTGCTGCACTTGCTCTAGTTGTTCTTGATTTCAAGGATGCTTGGCCAAGCCTAGAAAAGGTACATTTGAGAAAATTGGTAATTTTACAGCGTAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0008150 GO:0008324 GO:0008490 GO:0008509 GO:0015075 GO:0015103 GO:0015105 GO:0015291 GO:0015318 GO:0015399 GO:0015405 GO:0015446 GO:0015698 GO:0015700 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043225 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098655 GO:0098656 GO:0098660 GO:0099131 GO:0099132 GO:0099133 GO:1901683 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

406

Amino Acids

44.22

Weight (kDa)

9.17

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CitMHS	PF03600	27 - 400	9.5e-69	Citrate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02260 AT1G02260
fragaria_vesca	FvH4_7g29922 FvH4_7g29950
malus_domestica	MD07G1275000.v1.1 MD07G1275200.v1.1 MD07G1275300.v1.1 MD07G1275500.v1.1 MD07G1275600.v1.1 MD07G1275700.v1.1
prunus_persica	Prupe.2G298200_v2.0.a1 Prupe.2G298200_v2.0.a1 Prupe.2G298200_v2.0.a1
pyrus_communis	pycom07g25110
rosa_chinensis	RchiOBHm_Chr1g0377891 RchiOBHm_Chr1g0377911
rosa_laevigata	RLG00000026487 RLG00000026488
rosa_multiflora	Rmu_sc0004611.1_g000001 Rmu_sc0004824.1_g000012 Rmu_sc0004824.1_g000015
rosa_roxburghii	Rroxscaffold_4G00280950 Rroxscaffold_4G00280970
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG426100 Rh1AG426300 Rh1BG383000 Rh1CG396800 Rh1DG414000
rosa_wichuraiana	Rw1G037220 Rw1G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	112
Acc16I	TGCGCA	1 cut(s)	1114
AccB7I	CCANNNNNTGG	2 cut(s)	197, 1023
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	2 cut(s)	68, 419
AclWI	GGATC	1 cut(s)	171
AcoI	YGGCCR	1 cut(s)	1163
AcsI	RAATTY	4 cut(s)	522, 549, 868, 1009
AcuI	CTGAAG	1 cut(s)	795
AdeI	CACNNNGTG	1 cut(s)	716
AfaI	GTAC	3 cut(s)	390, 979, 1182
AfiI	CCNNNNNNNGG	6 cut(s)	160, 197, 765, 919, 1023, 1177
AflIII	ACRYGT	1 cut(s)	1101
AgeI	ACCGGT	1 cut(s)	687
AgsI	TTSAA	6 cut(s)	239, 256, 339, 727, 873, 1153
AjnI	CCWGG	1 cut(s)	498
AjuI	GAANNNNNNNTTGG	2 cut(s)	1021, 1053
AluBI	AGCT	5 cut(s)	509, 650, 739, 815, 908
AluI	AGCT	5 cut(s)	509, 650, 739, 815, 908
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	3 cut(s)	120, 812, 887
AlwI	GGATC	1 cut(s)	171
AlwNI	CAGNNNCTG	2 cut(s)	499, 739
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	3 cut(s)	199, 1093, 1163
ApeKI	GCWGC	4 cut(s)	176, 470, 647, 1124
ApoI	RAATTY	4 cut(s)	522, 549, 868, 1009
ArsI	GACNNNNNNTTYG	2 cut(s)	449, 481
AsiGI	ACCGGT	1 cut(s)	687
AspLEI	GCGC	2 cut(s)	1084, 1115
AspS9I	GGNCC	1 cut(s)	1093
AsuHPI	GGTGA	3 cut(s)	343, 677, 687
AxyI	CCTNAGG	1 cut(s)	794
BalI	TGGCCA	1 cut(s)	1165
BauI	CACGAG	1 cut(s)	829
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	4 cut(s)	163, 482, 659, 1111
BccI	CCATC	1 cut(s)	130
BciT130I	CCWGG	1 cut(s)	500
BcoDI	GTCTC	3 cut(s)	120, 812, 887
BfaI	CTAG	5 cut(s)	32, 752, 948, 1136, 1172
BfmI	CTRYAG	3 cut(s)	108, 468, 984
BisI	GCNGC	4 cut(s)	177, 471, 648, 1125
BlsI	GCNGC	4 cut(s)	178, 472, 649, 1126
Bme1390I	CCNGG	1 cut(s)	500
BmgT120I	GGNCC	1 cut(s)	1093
BmiI	GGNNCC	2 cut(s)	800, 927
BmrFI	CCNGG	1 cut(s)	500
BmsI	GCATC	2 cut(s)	728, 1147
BpiI	GAAGAC	1 cut(s)	648
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
BpmI	CTGGAG	3 cut(s)	672, 730, 762
BpuEI	CTTGAG	1 cut(s)	433
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	196
BsaWI	WCCGGW	2 cut(s)	160, 687
BsaXI	ACNNNNNCTCC	4 cut(s)	564, 594, 645, 675
Bsc4I	CCNNNNNNNGG	6 cut(s)	160, 197, 765, 919, 1023, 1177
Bse118I	RCCGGY	1 cut(s)	687
Bse1I	ACTGG	2 cut(s)	779, 929
Bse21I	CCTNAGG	1 cut(s)	794
Bse3DI	GCAATG	2 cut(s)	135, 567
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	5 cut(s)	424, 640, 719, 1038, 1162
BseLI	CCNNNNNNNGG	6 cut(s)	160, 197, 765, 919, 1023, 1177
BseMI	GCAATG	2 cut(s)	135, 567
BseMII	CTCAG	6 cut(s)	372, 506, 746, 807, 813, 879
BseNI	ACTGG	2 cut(s)	779, 929
BseRI	GAGGAG	2 cut(s)	683, 905
BseXI	GCAGC	4 cut(s)	163, 482, 659, 1111
BsgI	GTGCAG	1 cut(s)	1110
BshFI	GGCC	3 cut(s)	201, 1095, 1165
BshTI	ACCGGT	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	3 cut(s)	77, 161, 688
BslFI	GGGAC	2 cut(s)	68, 226
BslI	CCNNNNNNNGG	6 cut(s)	160, 197, 765, 919, 1023, 1177
BsmAI	GTCTC	3 cut(s)	120, 812, 887
BsmFI	GGGAC	2 cut(s)	68, 226
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	3 cut(s)	201, 1095, 1165
Bso31I	GGTCTC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	4 cut(s)	163, 184, 825, 950
BspACI	CCGC	2 cut(s)	68, 419
BspANI	GGCC	3 cut(s)	201, 1095, 1165
BspCNI	CTCAG	6 cut(s)	373, 505, 745, 808, 814, 880
BspEI	TCCGGA	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	800, 927
BspMAI	CTGCAG	2 cut(s)	112, 472
BspPI	GGATC	1 cut(s)	171
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	135, 567
BsrFI	RCCGGY	1 cut(s)	687
BsrI	ACTGG	2 cut(s)	779, 929
BssAI	RCCGGY	1 cut(s)	687
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	4 cut(s)	163, 184, 825, 950
BssSI	CACGAG	1 cut(s)	829
BssT1I	CCWWGG	1 cut(s)	196
Bst2BI	CACGAG	1 cut(s)	829
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	2 cut(s)	708, 803
BstAPI	GCANNNNNTGC	1 cut(s)	1121
BstC8I	GCNNGC	2 cut(s)	438, 558
BstDEI	CTNAG	7 cut(s)	381, 492, 732, 794, 816, 822, 888
BstENI	CCTNNNNNAGG	1 cut(s)	1175
BstF5I	GGATG	5 cut(s)	424, 640, 719, 1038, 1162
BstHHI	GCGC	2 cut(s)	1084, 1115
BstKTI	GATC	4 cut(s)	166, 187, 828, 953
BstMAI	GTCTC	3 cut(s)	120, 812, 887
BstMBI	GATC	4 cut(s)	163, 184, 825, 950
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 452, 562, 1121, 1130
BstNI	CCWGG	1 cut(s)	500
BstNSI	RCATGY	1 cut(s)	1105
BstSCI	CCNGG	1 cut(s)	498
BstSFI	CTRYAG	3 cut(s)	108, 468, 984
BstV1I	GCAGC	4 cut(s)	163, 482, 659, 1111
BstV2I	GAAGAC	1 cut(s)	648
Bsu36I	CCTNAGG	1 cut(s)	794
BsuRI	GGCC	3 cut(s)	201, 1095, 1165
BtsCI	GGATG	5 cut(s)	424, 640, 719, 1038, 1162
BtsIMutI	CAGTG	1 cut(s)	704
Cac8I	GCNNGC	2 cut(s)	438, 558
CaiI	CAGNNNCTG	2 cut(s)	499, 739
CfoI	GCGC	2 cut(s)	1084, 1115
Cfr10I	RCCGGY	1 cut(s)	687
Cfr13I	GGNCC	1 cut(s)	1093
CseI	GACGC	2 cut(s)	653, 867
CsiI	ACCWGGT	1 cut(s)	498
Csp6I	GTAC	3 cut(s)	389, 978, 1181
CspAI	ACCGGT	1 cut(s)	687
CviAII	CATG	2 cut(s)	1102, 1107
CviQI	GTAC	3 cut(s)	389, 978, 1181
DdeI	CTNAG	7 cut(s)	381, 492, 732, 794, 816, 822, 888
DpnI	GATC	4 cut(s)	165, 186, 827, 952
DpnII	GATC	4 cut(s)	163, 184, 825, 950
DraIII	CACNNNGTG	1 cut(s)	716
DrdI	GACNNNNNNGTC	1 cut(s)	112
DseDI	GACNNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	1163
Eco130I	CCWWGG	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	795
Eco81I	CCTNAGG	1 cut(s)	794
EcoNI	CCTNNNNNAGG	1 cut(s)	1175
EcoRII	CCWGG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	2 cut(s)	1105, 1110
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FaqI	GGGAC	2 cut(s)	68, 226
FatI	CATG	2 cut(s)	1101, 1106
Fnu4HI	GCNGC	4 cut(s)	177, 471, 648, 1125
FokI	GGATG	5 cut(s)	411, 647, 706, 1045, 1169
Fsp4HI	GCNGC	4 cut(s)	177, 471, 648, 1125
FspBI	CTAG	5 cut(s)	32, 752, 948, 1136, 1172
FspI	TGCGCA	1 cut(s)	1114
GlaI	GCGC	2 cut(s)	1083, 1114
GluI	GCNGC	4 cut(s)	177, 471, 648, 1125
GsuI	CTGGAG	3 cut(s)	672, 730, 762
HaeIII	GGCC	3 cut(s)	201, 1095, 1165
HapII	CCGG	3 cut(s)	77, 161, 688
HgaI	GACGC	2 cut(s)	653, 867
HhaI	GCGC	2 cut(s)	1084, 1115
Hin1II	CATG	2 cut(s)	1105, 1110
Hin6I	GCGC	2 cut(s)	1082, 1113
HinP1I	GCGC	2 cut(s)	1082, 1113
HinfI	GANTC	4 cut(s)	150, 315, 857, 989
HpaII	CCGG	3 cut(s)	77, 161, 688
HphI	GGTGA	3 cut(s)	343, 677, 687
Hpy188I	TCNGA	4 cut(s)	149, 495, 516, 939
Hpy188III	TCNNGA	9 cut(s)	58, 161, 236, 610, 628, 734, 747, 829, 1145
HpyAV	CCTTC	5 cut(s)	625, 733, 819, 992, 1023
HpyCH4III	ACNGT	2 cut(s)	708, 803
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 452, 562, 1121, 1130
HpyF3I	CTNAG	7 cut(s)	381, 492, 732, 794, 816, 822, 888
Hsp92II	CATG	2 cut(s)	1105, 1110
HspAI	GCGC	2 cut(s)	1082, 1113
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	163, 184, 825, 950
LmnI	GCTCC	3 cut(s)	125, 293, 736
Lsp1109I	GCAGC	4 cut(s)	163, 482, 659, 1111
LweI	GCATC	2 cut(s)	728, 1147
MabI	ACCWGGT	1 cut(s)	498
MaeI	CTAG	5 cut(s)	32, 752, 948, 1136, 1172
MaeIII	GTNAC	2 cut(s)	708, 1060
MalI	GATC	4 cut(s)	165, 186, 827, 952
MboI	GATC	4 cut(s)	163, 184, 825, 950
MboII	GAAGA	2 cut(s)	6, 653
MfeI	CAATTG	3 cut(s)	39, 96, 180
MhlI	GDGCHC	1 cut(s)	346
MlsI	TGGCCA	1 cut(s)	1165
MluNI	TGGCCA	1 cut(s)	1165
MlyI	GAGTC	4 cut(s)	159, 324, 866, 998
Mox20I	TGGCCA	1 cut(s)	1165
MroI	TCCGGA	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	1165
MseI	TTAA	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	1165
MspA1I	CMGCKG	2 cut(s)	650, 815
MspI	CCGG	3 cut(s)	77, 161, 688
MspR9I	CCNGG	1 cut(s)	500
MunI	CAATTG	3 cut(s)	39, 96, 180
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	1 cut(s)	500
MwoI	GCNNNNNNNGC	5 cut(s)	176, 452, 562, 1121, 1130
NdeII	GATC	4 cut(s)	163, 184, 825, 950
NlaIII	CATG	2 cut(s)	1105, 1110
NlaIV	GGNNCC	2 cut(s)	800, 927
NmuCI	GTSAC	1 cut(s)	708
NsbI	TGCGCA	1 cut(s)	1114
NspI	RCATGY	1 cut(s)	1105
PciI	ACATGT	1 cut(s)	1101
PctI	GAATGC	1 cut(s)	589
PflMI	CCANNNNNTGG	2 cut(s)	197, 1023
PinAI	ACCGGT	1 cut(s)	687
PkrI	GCNGC	4 cut(s)	178, 472, 649, 1126
PleI	GAGTC	4 cut(s)	158, 323, 865, 997
PpsI	GAGTC	4 cut(s)	158, 323, 865, 997
PscI	ACATGT	1 cut(s)	1101
Psp6I	CCWGG	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	2 cut(s)	800, 927
PspPI	GGNCC	1 cut(s)	1093
PstI	CTGCAG	2 cut(s)	112, 472
PstNI	CAGNNNCTG	2 cut(s)	499, 739
PvuII	CAGCTG	2 cut(s)	650, 815
RsaI	GTAC	3 cut(s)	390, 979, 1182
RsaNI	GTAC	3 cut(s)	389, 978, 1181
SaqAI	TTAA	1 cut(s)	21
SatI	GCNGC	4 cut(s)	177, 471, 648, 1125
Sau3AI	GATC	4 cut(s)	163, 184, 825, 950
Sau96I	GGNCC	1 cut(s)	1093
SchI	GAGTC	4 cut(s)	159, 324, 866, 998
ScrFI	CCNGG	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	346
SexAI	ACCWGGT	1 cut(s)	498
SfaNI	GCATC	2 cut(s)	728, 1147
SfcI	CTRYAG	3 cut(s)	108, 468, 984
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
SsiI	CCGC	2 cut(s)	68, 419
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	5 cut(s)	32, 752, 948, 1136, 1172
StyD4I	CCNGG	1 cut(s)	498
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	2 cut(s)	708, 803
TatI	WGTACW	2 cut(s)	388, 977
Tru1I	TTAA	1 cut(s)	21
Tru9I	TTAA	1 cut(s)	21
TscAI	CASTG	1 cut(s)	711
TseFI	GTSAC	1 cut(s)	708
TseI	GCWGC	4 cut(s)	176, 470, 647, 1124
Tsp45I	GTSAC	1 cut(s)	708
TspRI	CASTG	1 cut(s)	711
Van91I	CCANNNNNTGG	2 cut(s)	197, 1023
XagI	CCTNNNNNAGG	1 cut(s)	1175
XapI	RAATTY	4 cut(s)	522, 549, 868, 1009
XceI	RCATGY	1 cut(s)	1105
XspI	CTAG	5 cut(s)	32, 752, 948, 1136, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.