Rw1G037220

Transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
64889398 .. 64893378
3981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037220.1

Sequence Viewer

Length: 1512 bp
ATGGCTTCTGTCAAAGTGATTCTAGGCTCAATTGCCTTTGCAACATTCTGGATATTGGCGGTGTTTCCGGCTGTCCCTTTTCTGCCAATTGGGAGGACTGCAGGGTCTCTTTTTGGGGCAATGCTGATGGTTGTGTTCCGAGTCCTAACTCCGGATCAAGCCTACGCCGCAATTGATCTCCCAATCATTGGACTTTTGTTTGGGACAATGGTTGTGAGTATCTATCTTGAAAGAGCAGATATGTTCAAGTATTTGGGCAAGTTACTCTTGTGGAAAAGCCAAGGAGCAAAGGACTTGATATGTAGAGTCTGTTTGATTTCTGCCATTTCAAGTGCTCTGTTAACCAATGACACCGCTTGCGTGGTTTTGACCGAGTTTGTACTAAAAGTTGCAAAACAACACAACTTACCGCCTCGTCCGTTCCTGCTTGCACTTGCCACAAGTGCAAATATTGGGTCTGCAGCAACCCCAATCGGCAATCCTCAGAACCTGGTTATAGCTGTTCGGAGAGTTTGTGTGAATGCTTTGCTTCTTTTGTGTATGTTCTGGAAGTTGTTGTTTATCCAGAAGGATGTGGAAGACGCAACTGGAGAGGTTGTCGGGGAGGAGGATGTGATTTCTCATCGGTTTTCACCAGCCTTCAACCCAGAGGAAACCAAGAGTCTGCTAGGTTCTCCATTTGTTGAGAACCGTGGGAACCGTGTGCCTTCAGCTGAGAACGAGATCAAGAGGGTTTCAAGTGCTGGTACTTTTGAGTCTGCAAGAAATTCAAGTGCGTCAAAGACTGAGGAGACAAATGATGTGGCTTCCCAGAAAAAGGAGGAACCAGTTGCTCTGAAAATGACTAGATCAAAGGAAAAACTTGGAGATAATTGTACTGCTACAGAGTCTTTGGAAGGAAAGGAAAATTTGACCACAAAATGGAGAAGGATGTTGTGGAAATCTGGCGTTTATTTTGTTACCATAGGAATGTTGGTTGCGTTTCTTATGGGCCTGAGCATGTCATGGTGCGCGATTACTGCTGCACTTGCTCTAGTTGTTCTTGATTTCAAGGATGCTCGGCCATGCCTAGAAAAGGTATCATATTCACTTTTAATTTTCTTCTGTGGTATGTTTATAACTGTGGATGGCTTCAACAAAACTGAAATTCCAAGCACTCTTTGGCACTTCATGGAGCCCCATGCGAAAATTGATCATGTTGGCGGAATAGCAGTTCTTGCTGTTACCATACTCGTACTATCAAACGTGGCTTCAAACGTGCCAACTGTTCTCTTGCTTGGAGGACGAGTGGCAGCATCCGCAGCTTCAATATCAGCAGCGGATGAGAAGAAGGCATGGCTGCTTCTAGCTTGGGTGAGCACCGTGGCCGGGAACCTCTCGCTAATGGGATCAGCAGCCAACTTGATAGTATGTGAACAGGCTCGCCAACCTCCACTCCTTGCATACAATTTGTCATTCTGGACTCAAAAAAGAAATCTATCAATATTCAATGAATATGAAAATAGAAAATAA

Protein Analysis

503

Amino Acids

54.84

Weight (kDa)

8.7

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 24 - 456 7.9e-84 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1118
AasI GACNNNNNNGTC 1 cut(s) 103
AccB7I CCANNNNNTGG 2 cut(s) 188, 921
AccII CGCG 1 cut(s) 1013
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 7 cut(s) 59, 168, 354, 410, 1203, 1299, 1319
AclWI GGATC 2 cut(s) 162, 1396
AcoI YGGCCR 2 cut(s) 1061, 1365
AcsI RAATTY 3 cut(s) 766, 907, 1146
AcuI CTGAAG 1 cut(s) 693
AfaI GTAC 4 cut(s) 381, 748, 877, 1236
AfiI CCNNNNNNNGG 6 cut(s) 151, 188, 817, 921, 1075, 1368
AjnI CCWGG 1 cut(s) 489
AloI GAACNNNNNNTCC 2 cut(s) 1197, 1229
AluBI AGCT 4 cut(s) 500, 713, 1304, 1349
AluI AGCT 4 cut(s) 500, 713, 1304, 1349
Alw21I GWGCWC 2 cut(s) 337, 1361
Alw26I GTCTC 2 cut(s) 111, 785
AlwI GGATC 2 cut(s) 162, 1396
AlwNI CAGNNNCTG 1 cut(s) 490
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 3 cut(s) 991, 1061, 1365
ApeKI GCWGC 7 cut(s) 461, 1022, 1292, 1301, 1316, 1339, 1394
ApoI RAATTY 3 cut(s) 766, 907, 1146
ArsI GACNNNNNNTTYG 2 cut(s) 440, 472
AspLEI GCGC 1 cut(s) 1013
AspS9I GGNCC 1 cut(s) 991
AsuC2I CCSGG 1 cut(s) 1369
AsuHPI GGTGA 2 cut(s) 624, 1366
BanII GRGCYC 1 cut(s) 1179
BbsI GAAGAC 1 cut(s) 585
Bbv12I GWGCWC 2 cut(s) 337, 1361
BbvI GCAGC 7 cut(s) 473, 1009, 1304, 1313, 1326, 1328, 1406
BccI CCATC 2 cut(s) 121, 1121
BciT130I CCWGG 1 cut(s) 491
BclI TGATCA 1 cut(s) 1192
BcnI CCSGG 1 cut(s) 1369
BcoDI GTCTC 2 cut(s) 111, 785
BfaI CTAG 6 cut(s) 23, 668, 846, 1034, 1070, 1346
BfmI CTRYAG 3 cut(s) 99, 459, 882
BisI GCNGC 8 cut(s) 168, 462, 1023, 1293, 1302, 1317, 1340, 1395
BlsI GCNGC 8 cut(s) 169, 463, 1024, 1294, 1303, 1318, 1341, 1396
Bme1390I CCNGG 2 cut(s) 491, 1369
BmgT120I GGNCC 1 cut(s) 991
BmiI GGNNCC 4 cut(s) 698, 825, 1176, 1373
BmrFI CCNGG 2 cut(s) 491, 1369
BmsI GCATC 2 cut(s) 1045, 1304
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 1 cut(s) 609
Bpu10I CCTNAGC 1 cut(s) 995
BpuMI CCSGG 1 cut(s) 1369
BsaI GGTCTC 1 cut(s) 111
BsaJI CCNNGG 3 cut(s) 280, 691, 1362
BsaWI WCCGGW 1 cut(s) 151
BsaXI ACNNNNNCTCC 8 cut(s) 499, 529, 582, 612, 1272, 1302, 1419, 1449
Bsc4I CCNNNNNNNGG 6 cut(s) 151, 188, 817, 921, 1075, 1368
Bse1I ACTGG 2 cut(s) 592, 827
Bse3DI GCAATG 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 3 cut(s) 280, 691, 1362
BseGI GGATG 7 cut(s) 577, 616, 936, 1060, 1132, 1295, 1327
BseLI CCNNNNNNNGG 6 cut(s) 151, 188, 817, 921, 1075, 1368
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 4 cut(s) 497, 705, 777, 986
BseNI ACTGG 2 cut(s) 592, 827
BseRI GAGGAG 2 cut(s) 620, 803
BseXI GCAGC 7 cut(s) 473, 1009, 1304, 1313, 1326, 1328, 1406
BsgI GTGCAG 1 cut(s) 1008
Bsh1236I CGCG 1 cut(s) 1013
BshFI GGCC 3 cut(s) 993, 1063, 1367
BsiHKAI GWGCWC 2 cut(s) 337, 1361
BsiSI CCGG 3 cut(s) 68, 152, 1368
BslFI GGGAC 2 cut(s) 59, 217
BslI CCNNNNNNNGG 6 cut(s) 151, 188, 817, 921, 1075, 1368
BsmAI GTCTC 2 cut(s) 111, 785
BsmFI GGGAC 2 cut(s) 59, 217
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 3 cut(s) 993, 1063, 1367
Bso31I GGTCTC 1 cut(s) 111
Bsp1286I GDGCHC 3 cut(s) 337, 1179, 1361
Bsp13I TCCGGA 1 cut(s) 151
Bsp143I GATC 6 cut(s) 154, 175, 723, 848, 1192, 1388
BspACI CCGC 7 cut(s) 59, 168, 354, 410, 1203, 1299, 1319
BspANI GGCC 3 cut(s) 993, 1063, 1367
BspCNI CTCAG 4 cut(s) 496, 706, 778, 987
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 1013
BspLI GGNNCC 4 cut(s) 698, 825, 1176, 1373
BspMAI CTGCAG 2 cut(s) 103, 463
BspPI GGATC 2 cut(s) 162, 1396
BspTNI GGTCTC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 126
BsrI ACTGG 2 cut(s) 592, 827
BssECI CCNNGG 3 cut(s) 280, 691, 1362
BssMI GATC 6 cut(s) 154, 175, 723, 848, 1192, 1388
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 5 cut(s) 692, 701, 1123, 1267, 1363
BstAPI GCANNNNNTGC 1 cut(s) 1217
BstC8I GCNNGC 3 cut(s) 358, 429, 1423
BstDEI CTNAG 4 cut(s) 483, 714, 786, 995
BstDSI CCRYGG 2 cut(s) 691, 1362
BstENI CCTNNNNNAGG 1 cut(s) 1073
BstF5I GGATG 7 cut(s) 577, 616, 936, 1060, 1132, 1295, 1327
BstFNI CGCG 1 cut(s) 1013
BstHHI GCGC 1 cut(s) 1013
BstKTI GATC 6 cut(s) 157, 178, 726, 851, 1195, 1391
BstMAI GTCTC 2 cut(s) 111, 785
BstMBI GATC 6 cut(s) 154, 175, 723, 848, 1192, 1388
BstMWI GCNNNNNNNGC 7 cut(s) 167, 443, 1019, 1028, 1217, 1298, 1301
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 1 cut(s) 1003
BstSCI CCNGG 2 cut(s) 489, 1367
BstSFI CTRYAG 3 cut(s) 99, 459, 882
BstUI CGCG 1 cut(s) 1013
BstV1I GCAGC 7 cut(s) 473, 1009, 1304, 1313, 1326, 1328, 1406
BstV2I GAAGAC 1 cut(s) 585
BsuRI GGCC 3 cut(s) 993, 1063, 1367
BtgI CCRYGG 2 cut(s) 691, 1362
BtsCI GGATG 7 cut(s) 577, 616, 936, 1060, 1132, 1295, 1327
Cac8I GCNNGC 3 cut(s) 358, 429, 1423
CaiI CAGNNNCTG 1 cut(s) 490
CfoI GCGC 1 cut(s) 1013
Cfr13I GGNCC 1 cut(s) 991
CseI GACGC 2 cut(s) 590, 765
CsiI ACCWGGT 1 cut(s) 489
Csp6I GTAC 4 cut(s) 380, 747, 876, 1235
CspCI CAANNNNNGTGG 2 cut(s) 783, 818
CviAII CATG 7 cut(s) 1000, 1005, 1065, 1171, 1181, 1196, 1335
CviQI GTAC 4 cut(s) 380, 747, 876, 1235
DdeI CTNAG 4 cut(s) 483, 714, 786, 995
DpnI GATC 6 cut(s) 156, 177, 725, 850, 1194, 1390
DpnII GATC 6 cut(s) 154, 175, 723, 848, 1192, 1388
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 2 cut(s) 1061, 1365
EciI GGCGGA 1 cut(s) 1218
Eco130I CCWWGG 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 1179
Eco31I GGTCTC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 693
EcoNI CCTNNNNNAGG 1 cut(s) 1073
EcoRII CCWGG 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 280
EcoT38I GRGCYC 1 cut(s) 1179
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 7 cut(s) 1003, 1008, 1068, 1174, 1184, 1199, 1338
FalI AAGNNNNNCTT 2 cut(s) 251, 283
FaqI GGGAC 2 cut(s) 59, 217
FatI CATG 7 cut(s) 999, 1004, 1064, 1170, 1180, 1195, 1334
FbaI TGATCA 1 cut(s) 1192
Fnu4HI GCNGC 8 cut(s) 168, 462, 1023, 1293, 1302, 1317, 1340, 1395
FokI GGATG 7 cut(s) 584, 623, 943, 1067, 1139, 1282, 1334
FriOI GRGCYC 1 cut(s) 1179
Fsp4HI GCNGC 8 cut(s) 168, 462, 1023, 1293, 1302, 1317, 1340, 1395
FspBI CTAG 6 cut(s) 23, 668, 846, 1034, 1070, 1346
GlaI GCGC 1 cut(s) 1012
GluI GCNGC 8 cut(s) 168, 462, 1023, 1293, 1302, 1317, 1340, 1395
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 3 cut(s) 993, 1063, 1367
HapII CCGG 3 cut(s) 68, 152, 1368
HgaI GACGC 2 cut(s) 590, 765
HhaI GCGC 1 cut(s) 1013
Hin1II CATG 7 cut(s) 1003, 1008, 1068, 1174, 1184, 1199, 1338
Hin6I GCGC 1 cut(s) 1011
HinP1I GCGC 1 cut(s) 1011
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 7 cut(s) 19, 141, 306, 661, 755, 887, 1462
HpaI GTTAAC 1 cut(s) 342
HpaII CCGG 3 cut(s) 68, 152, 1368
HphI GGTGA 2 cut(s) 624, 1366
Hpy166II GTNNAC 2 cut(s) 342, 1415
Hpy188I TCNGA 4 cut(s) 140, 486, 507, 837
Hpy188III TCNNGA 8 cut(s) 49, 152, 227, 547, 565, 727, 1043, 1459
Hpy8I GTNNAC 2 cut(s) 342, 1415
HpyAV CCTTC 6 cut(s) 562, 649, 717, 890, 921, 1324
HpyCH4III ACNGT 5 cut(s) 692, 701, 1123, 1267, 1363
HpyCH4IV ACGT 2 cut(s) 1245, 1257
HpyCH4V TGCA 9 cut(s) 41, 101, 392, 431, 446, 461, 761, 1025, 1442
HpyF10VI GCNNNNNNNGC 7 cut(s) 167, 443, 1019, 1028, 1217, 1298, 1301
HpyF3I CTNAG 4 cut(s) 483, 714, 786, 995
HpySE526I ACGT 2 cut(s) 1245, 1257
Hsp92II CATG 7 cut(s) 1003, 1008, 1068, 1174, 1184, 1199, 1338
HspAI GCGC 1 cut(s) 1011
Kpn2I TCCGGA 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 1192
KspAI GTTAAC 1 cut(s) 342
Kzo9I GATC 6 cut(s) 154, 175, 723, 848, 1192, 1388
LmnI GCTCC 2 cut(s) 284, 1174
Lsp1109I GCAGC 7 cut(s) 473, 1009, 1304, 1313, 1326, 1328, 1406
LweI GCATC 2 cut(s) 1045, 1304
MabI ACCWGGT 1 cut(s) 489
MaeI CTAG 6 cut(s) 23, 668, 846, 1034, 1070, 1346
MaeII ACGT 2 cut(s) 1245, 1257
MaeIII GTNAC 3 cut(s) 261, 958, 1222
MalI GATC 6 cut(s) 156, 177, 725, 850, 1194, 1390
MboI GATC 6 cut(s) 154, 175, 723, 848, 1192, 1388
MboII GAAGA 3 cut(s) 590, 1093, 1339
MfeI CAATTG 3 cut(s) 30, 87, 171
MhlI GDGCHC 3 cut(s) 337, 1179, 1361
MlyI GAGTC 6 cut(s) 150, 315, 670, 764, 896, 1456
MroI TCCGGA 1 cut(s) 151
MseI TTAA 2 cut(s) 341, 1094
MslI CAYNNNNRTG 1 cut(s) 968
MspA1I CMGCKG 2 cut(s) 713, 1319
MspI CCGG 3 cut(s) 68, 152, 1368
MspR9I CCNGG 2 cut(s) 491, 1369
MunI CAATTG 3 cut(s) 30, 87, 171
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 1 cut(s) 491
MvnI CGCG 1 cut(s) 1013
MwoI GCNNNNNNNGC 7 cut(s) 167, 443, 1019, 1028, 1217, 1298, 1301
NciI CCSGG 1 cut(s) 1369
NdeII GATC 6 cut(s) 154, 175, 723, 848, 1192, 1388
NlaIII CATG 7 cut(s) 1003, 1008, 1068, 1174, 1184, 1199, 1338
NlaIV GGNNCC 4 cut(s) 698, 825, 1176, 1373
NmeAIII GCCGAG 1 cut(s) 1039
NspI RCATGY 1 cut(s) 1003
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 19
PflMI CCANNNNNTGG 2 cut(s) 188, 921
PkrI GCNGC 8 cut(s) 169, 463, 1024, 1294, 1303, 1318, 1341, 1396
PleI GAGTC 6 cut(s) 149, 314, 669, 763, 895, 1456
PpsI GAGTC 6 cut(s) 149, 314, 669, 763, 895, 1456
PsiI TTATAA 1 cut(s) 1118
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 4 cut(s) 698, 825, 1176, 1373
PspPI GGNCC 1 cut(s) 991
PstI CTGCAG 2 cut(s) 103, 463
PstNI CAGNNNCTG 1 cut(s) 490
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 4 cut(s) 381, 748, 877, 1236
RsaNI GTAC 4 cut(s) 380, 747, 876, 1235
RseI CAYNNNNRTG 1 cut(s) 968
SaqAI TTAA 2 cut(s) 341, 1094
SatI GCNGC 8 cut(s) 168, 462, 1023, 1293, 1302, 1317, 1340, 1395
Sau3AI GATC 6 cut(s) 154, 175, 723, 848, 1192, 1388
Sau96I GGNCC 1 cut(s) 991
SchI GAGTC 6 cut(s) 150, 315, 670, 764, 896, 1456
ScrFI CCNGG 2 cut(s) 491, 1369
SduI GDGCHC 3 cut(s) 337, 1179, 1361
SexAI ACCWGGT 1 cut(s) 489
SfaNI GCATC 2 cut(s) 1045, 1304
SfcI CTRYAG 3 cut(s) 99, 459, 882
SmiMI CAYNNNNRTG 1 cut(s) 968
SsiI CCGC 7 cut(s) 59, 168, 354, 410, 1203, 1299, 1319
SspI AATATT 2 cut(s) 451, 1485
SspMI CTAG 6 cut(s) 23, 668, 846, 1034, 1070, 1346
StyD4I CCNGG 2 cut(s) 489, 1367
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 5 cut(s) 692, 701, 1123, 1267, 1363
TaiI ACGT 2 cut(s) 1248, 1260
TaqII GACCGA 1 cut(s) 386
TatI WGTACW 2 cut(s) 379, 875
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 2 cut(s) 341, 1094
Tru9I TTAA 2 cut(s) 341, 1094
TseI GCWGC 7 cut(s) 461, 1022, 1292, 1301, 1316, 1339, 1394
TspDTI ATGAA 3 cut(s) 1159, 1506, 1512
TspGWI ACGGA 1 cut(s) 408
Van91I CCANNNNNTGG 2 cut(s) 188, 921
XagI CCTNNNNNAGG 1 cut(s) 1073
XapI RAATTY 3 cut(s) 766, 907, 1146
XceI RCATGY 1 cut(s) 1003
XcmI CCANNNNNNNNNTGG 2 cut(s) 970, 1158
XspI CTAG 6 cut(s) 23, 668, 846, 1034, 1070, 1346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.