Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004666

Physical Location & Seq

Genomic Coordinates Reverse (-)

34039384 .. 34041177

Gene Structure 1794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1275200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCAATGGCTTCTCCTGTCAAAGTGGTTCTTGGCTCGATTGCTTTTGCAGTCTTCTGGGTGTTGGCTGTGTTTCCGGCTGTCCCTTTCTTGCCAATTGGGAGGACTACAGGGTCCCTCCTTGGGGCAACGCTTATGATTGTTTTCCGAGTCTTAACTCCTGATCAAGCATATGCAGCTATTGATCTCCCAATGATCGATATGTTCAAGTATTTGGGCAAGTTGCTCATGTGGAAAACTCAAGGAGCAAAGGACTTGCTCTGTCGAATCTGTTTGATATCTGCAGTTTCGAGCGCCCTCTTCACCAATGACACCTCTTGTGTGATTTTGACCGAGTTTGTTCTGAAAGTTGCAAGACAACATAACCTCCTGCCTCATCCTTTCCTACTTGCCCTTGCCTCGAGTGCAAACATTGGGTCTGCCGCAACCCCGATTGGCAATCCTCAAAACCTTGTTATAGCTGTACAGAGTAAGATATCTTTCGGGACATTTGTGATTGGAATTCTCCCTGCAATGCTTGTGGGAGTTTGTGTGAATGCTTTGATTCTTCTATGTATGTTCTGGAGATTGTTGTCTGTCCAGAAGGTTGAGGAAGATCCAGCTCAGAAACCTGTTGCAGAGGATGATGTAAGTTCTCATCGGTTTTCACCAGCTACGTTGTCACCTAGTACATCCTTAAACTCTAGATTGGAAACCCCGGCTGTAAAAACCTCTTCAAATGTTAATGTGAGCGTAGGTAATGTTGAGACTCTCAGAAACTGCTTACCTTCGAGCAAGAATGAAGTAAACAAGGTTCCTAGTGGTGCGATAGAGCCTGCAAGAATTTCAAGTGCATCAAAAGGGACGAAACAATCCCATCAAAAAGGTCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0008150 GO:0008324 GO:0008490 GO:0008509 GO:0015075 GO:0015103 GO:0015105 GO:0015291 GO:0015318 GO:0015399 GO:0015405 GO:0015446 GO:0015698 GO:0015700 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043225 GO:0043492 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0090662 GO:0098655 GO:0098656 GO:0098660 GO:0099131 GO:0099132 GO:0099133 GO:1901683 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CitMHS

Protein Analysis

292

Amino Acids

31.05

Weight (kDa)

9.32

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CitMHS	PF03600	67 - 205	2.7e-38	Citrate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02260 AT1G02260
fragaria_vesca	FvH4_7g29922 FvH4_7g29950
malus_domestica	MD07G1275000.v1.1 MD07G1275200.v1.1 MD07G1275300.v1.1 MD07G1275500.v1.1 MD07G1275600.v1.1 MD07G1275700.v1.1
prunus_persica	Prupe.2G298200_v2.0.a1 Prupe.2G298200_v2.0.a1 Prupe.2G298200_v2.0.a1
pyrus_communis	pycom07g25110
rosa_chinensis	RchiOBHm_Chr1g0377891 RchiOBHm_Chr1g0377911
rosa_laevigata	RLG00000026487 RLG00000026488
rosa_multiflora	Rmu_sc0004611.1_g000001 Rmu_sc0004824.1_g000012 Rmu_sc0004824.1_g000015
rosa_roxburghii	Rroxscaffold_4G00280950 Rroxscaffold_4G00280970
rosa_rugosa	Rorug01G0405400
rosa_samantha	Rh1AG426100 Rh1AG426300 Rh1BG383000 Rh1CG396800 Rh1DG414000
rosa_wichuraiana	Rw1G037220 Rw1G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	112
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	1 cut(s)	590
AcsI	RAATTY	2 cut(s)	501, 822
AfaI	GTAC	2 cut(s)	465, 670
AfiI	CCNNNNNNNGG	2 cut(s)	123, 124
AgsI	TTSAA	3 cut(s)	208, 717, 828
AluBI	AGCT	4 cut(s)	179, 461, 602, 653
AluI	AGCT	4 cut(s)	179, 461, 602, 653
Alw26I	GTCTC	2 cut(s)	740, 872
AlwI	GGATC	1 cut(s)	590
AlwNI	CAGNNNCTG	1 cut(s)	759
Ama87I	CYCGRG	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	2 cut(s)	501, 822
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	3 cut(s)	295, 639, 654
AvaI	CYCGRG	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	864
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	2 cut(s)	740, 872
BfaI	CTAG	3 cut(s)	666, 684, 798
BfmI	CTRYAG	2 cut(s)	108, 282
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	2 cut(s)	177, 423
BlsI	GCNGC	2 cut(s)	178, 424
Bme1390I	CCNGG	1 cut(s)	698
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	400
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	3 cut(s)	115, 116, 795
BmrFI	CCNGG	1 cut(s)	698
BmsI	GCATC	1 cut(s)	842
BpiI	GAAGAC	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	583
BpuEI	CTTGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	698
Bsa29I	ATCGAT	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	872
BsaJI	CCNNGG	2 cut(s)	121, 696
BsaXI	ACNNNNNCTCC	4 cut(s)	351, 381, 516, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 124
Bse3DI	GCAATG	2 cut(s)	12, 519
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	121, 696
BseGI	GGATG	3 cut(s)	376, 628, 671
BseLI	CCNNNNNNNGG	2 cut(s)	123, 124
BseMI	GCAATG	2 cut(s)	12, 519
BseMII	CTCAG	2 cut(s)	617, 766
BseXI	GCAGC	1 cut(s)	188
BshVI	ATCGAT	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	400
BsiSI	CCGG	2 cut(s)	77, 698
BslFI	GGGAC	4 cut(s)	68, 100, 499, 856
BslI	CCNNNNNNNGG	2 cut(s)	123, 124
BsmAI	GTCTC	2 cut(s)	740, 872
BsmFI	GGGAC	4 cut(s)	68, 100, 499, 856
BsmI	GAATGC	1 cut(s)	541
Bso31I	GGTCTC	1 cut(s)	872
BsoBI	CYCGRG	1 cut(s)	400
Bsp1407I	TGTACA	1 cut(s)	463
Bsp143I	GATC	4 cut(s)	163, 184, 195, 595
BspACI	CCGC	1 cut(s)	423
BspCNI	CTCAG	2 cut(s)	616, 765
BspDI	ATCGAT	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	115, 116, 795
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	1 cut(s)	590
BspTNI	GGTCTC	1 cut(s)	872
BsrDI	GCAATG	2 cut(s)	12, 519
BsrGI	TGTACA	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	121, 696
BssMI	GATC	4 cut(s)	163, 184, 195, 595
BssT1I	CCWWGG	1 cut(s)	121
Bst6I	CTCTTC	2 cut(s)	305, 718
BstAUI	TGTACA	1 cut(s)	463
BstC8I	GCNNGC	1 cut(s)	816
BstDEI	CTNAG	2 cut(s)	603, 752
BstF5I	GGATG	3 cut(s)	376, 628, 671
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	4 cut(s)	166, 187, 198, 598
BstMAI	GTCTC	2 cut(s)	740, 872
BstMBI	GATC	4 cut(s)	163, 184, 195, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 404
BstSCI	CCNGG	1 cut(s)	696
BstSFI	CTRYAG	2 cut(s)	108, 282
BstV1I	GCAGC	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
Bsu15I	ATCGAT	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	376, 628, 671
Cac8I	GCNNGC	1 cut(s)	816
CaiI	CAGNNNCTG	1 cut(s)	759
CfoI	GCGC	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	198
Csp6I	GTAC	2 cut(s)	464, 669
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
CviAII	CATG	1 cut(s)	229
CviQI	GTAC	2 cut(s)	464, 669
DdeI	CTNAG	2 cut(s)	603, 752
DpnI	GATC	4 cut(s)	165, 186, 197, 597
DpnII	GATC	4 cut(s)	163, 184, 195, 595
DrdI	GACNNNNNNGTC	1 cut(s)	112
DseDI	GACNNNNNNGTC	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	305, 718
EarI	CTCTTC	2 cut(s)	305, 718
Eco130I	CCWWGG	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	872
Eco32I	GATATC	2 cut(s)	279, 477
Eco47I	GGWCC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	501
EcoRV	GATATC	2 cut(s)	279, 477
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	1 cut(s)	232
FaiI	YATR	9 cut(s)	137, 172, 174, 203, 230, 363, 458, 553, 557
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FaqI	GGGAC	4 cut(s)	68, 100, 499, 856
FatI	CATG	1 cut(s)	228
FauNDI	CATATG	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	177, 423
FokI	GGATG	3 cut(s)	363, 635, 658
Fsp4HI	GCNGC	2 cut(s)	177, 423
FspBI	CTAG	3 cut(s)	666, 684, 798
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	2 cut(s)	177, 423
GsuI	CTGGAG	1 cut(s)	583
HaeII	RGCGCY	1 cut(s)	297
HapII	CCGG	2 cut(s)	77, 698
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	4 cut(s)	150, 267, 544, 748
HpaII	CCGG	2 cut(s)	77, 698
HphI	GGTGA	3 cut(s)	295, 639, 654
Hpy166II	GTNNAC	1 cut(s)	787
Hpy188I	TCNGA	4 cut(s)	149, 345, 606, 755
Hpy188III	TCNNGA	5 cut(s)	161, 484, 562, 580, 684
Hpy8I	GTNNAC	1 cut(s)	787
HpyAV	CCTTC	2 cut(s)	577, 777
HpyCH4IV	ACGT	1 cut(s)	656
HpyCH4V	TGCA	9 cut(s)	50, 176, 284, 353, 407, 512, 617, 818, 833
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 404
HpyF3I	CTNAG	2 cut(s)	603, 752
HpySE526I	ACGT	1 cut(s)	656
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	1 cut(s)	294
KflI	GGGWCCC	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	163, 184, 195, 595
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	1 cut(s)	842
MaeI	CTAG	3 cut(s)	666, 684, 798
MaeII	ACGT	1 cut(s)	656
MaeIII	GTNAC	1 cut(s)	660
MalI	GATC	4 cut(s)	165, 186, 197, 597
MboI	GATC	4 cut(s)	163, 184, 195, 595
MboII	GAAGA	5 cut(s)	46, 292, 539, 605, 705
MfeI	CAATTG	1 cut(s)	96
MflI	RGATCY	1 cut(s)	595
MluCI	AATT	3 cut(s)	96, 501, 822
MlyI	GAGTC	2 cut(s)	159, 742
MseI	TTAA	3 cut(s)	155, 677, 723
MspI	CCGG	2 cut(s)	77, 698
MspR9I	CCNGG	1 cut(s)	698
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	541
MwoI	GCNNNNNNNGC	2 cut(s)	176, 404
NciI	CCSGG	1 cut(s)	698
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	4 cut(s)	163, 184, 195, 595
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	3 cut(s)	115, 116, 795
NmuCI	GTSAC	1 cut(s)	660
PaeR7I	CTCGAG	1 cut(s)	400
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	2 cut(s)	267, 544
PkrI	GCNGC	2 cut(s)	178, 424
PleI	GAGTC	2 cut(s)	158, 742
PpsI	GAGTC	2 cut(s)	158, 742
PpuMI	RGGWCCY	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	114
PspN4I	GGNNCC	3 cut(s)	115, 116, 795
PspPI	GGNCC	1 cut(s)	114
PspPPI	RGGWCCY	1 cut(s)	114
PspXI	VCTCGAGB	1 cut(s)	400
PsrI	GAACNNNNNNTAC	2 cut(s)	777, 809
PstI	CTGCAG	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	759
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	2 cut(s)	465, 670
RsaNI	GTAC	2 cut(s)	464, 669
SaqAI	TTAA	3 cut(s)	155, 677, 723
SatI	GCNGC	2 cut(s)	177, 423
Sau3AI	GATC	4 cut(s)	163, 184, 195, 595
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	2 cut(s)	159, 742
ScrFI	CCNGG	1 cut(s)	698
SfaNI	GCATC	1 cut(s)	842
SfcI	CTRYAG	2 cut(s)	108, 282
Sfr274I	CTCGAG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	114
SlaI	CTCGAG	1 cut(s)	400
SmlI	CTYRAG	2 cut(s)	240, 400
SmoI	CTYRAG	2 cut(s)	240, 400
Sse9I	AATT	3 cut(s)	96, 501, 822
SsiI	CCGC	1 cut(s)	423
SspMI	CTAG	3 cut(s)	666, 684, 798
StyD4I	CCNGG	1 cut(s)	696
StyI	CCWWGG	1 cut(s)	121
TaiI	ACGT	1 cut(s)	659
TaqI	TCGA	6 cut(s)	38, 198, 265, 290, 401, 770
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	3 cut(s)	96, 501, 822
TatI	WGTACW	2 cut(s)	463, 668
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	2 cut(s)	267, 544
Tru1I	TTAA	3 cut(s)	155, 677, 723
Tru9I	TTAA	3 cut(s)	155, 677, 723
TseFI	GTSAC	1 cut(s)	660
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	660
TspDTI	ATGAA	1 cut(s)	795
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	2 cut(s)	501, 822
XbaI	TCTAGA	1 cut(s)	683
XhoI	CTCGAG	1 cut(s)	400
XspI	CTAG	3 cut(s)	666, 684, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.