Rw1G037230

Transporter

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
64924803 .. 64928165
3363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037230.1

Sequence Viewer

Length: 1590 bp
ATGGCATTGGCTTCTTCTGTCAAAGTGGTTCTAGGCTCAATTGCCTTCGCAACATTCTGGATATTGGCGGTGTTTCCAGCTGTCCCTTTTCTGCCAATTGGGAGGACTGCAGGGTCTCTTTTAGGGGCAATGCTGATGGTTCTGTTCCGAGTCCTAACTCCGGATCAAGCCTACGCTGCAATTGATCTCCCAATCCTTGGCCTTTTGTTTGGGACAATGGTTGTGAGTATCTATCTTGAAAGAGCAGATATGTTCAAGTATTTGGGCAAGTTGCTCTTGTGGAAAAGCAAAGGAGCAAAGGACTTGATATGTAGAGTCTGTTTGATTTCTGCCATTTCAAGTGCTCTTTTCACCAATGACACCTCTTGTGTGGTTTTGACTGAGTTTGTACTAAAAGTTGCAAGACAACACAACTTACCGCCTCATCCATTCCTGCTTGCACTTGCCTCAAGTGCAAATATTGGGTCTGCAGCAACCCCAATCGGCAATCCTCAGAACCTGGTTATAGCTGTTCAGAGTAAAATTCCTTTTGGAAAGTTTGTTTTAGGAATTTTGCCTGCAATGCTTGTAGGAGTTTGTGTGAATGCTTTGCTTCTTTTGTGTATGTTCTGGAAGTTGTTGTCTATCCAGAAGGATGTGGAAGACGCAGCTGGAGAGGTTGTCGGGGAGGAGGATATGATTTCTCACCGGTTTTCACCAGCCACACTGTCACATAGTGCATCCTTCAACTCTCAGGAGCTGAACTCCAGACTAGAAGCCAAGAGTGGGATAAGTTCTCCAGTTGTTGATAACCTTAGGAACCGTGTGCCTTCAGCTGAGACTGAGATCACGAGGGTTTATAGTGCTGGTGCTTTTGAGTCTGCAAGAAATTCAAGTGCGTCAAAGACTGAGGAGACAAATGATGTAGCTTCCCAGAAAAAGGAGGAACCAGTTGCTCTGAAAAGGACTAGATCAAAGGAAAAACTTGGAGATAATTGTACTACTATAGAGTCTTTGGAAGGAAAGGAAAATTTGACCACAAAATGGAGAAGGATGTTTTGGAAATCTGGCGTTTATTTTGTTACGATAGGAATGTTGGTTGCGCTTCTTATGGGCCTGAACATGTCATGGTGCGCAATTACTGCTGCACTTGCTCTAGTTGTTCTTGATTTCAAGGATGCTTGGCCAAGCCTAGAAAAGGTATCCTATTCACTTTTAATTTTCTTCTGTGGTATGTTTATAACTGTGGATGGCTTCAACAAAACCGGCATTCCAAGCACTCTTTGGGACTTCATGGAGCCCCATGCGAAAATTGATCATGTTAGCGGAATAGCAGCTCTTGCTGTTACCATACTTGTACTATCAAACGTGGCTTCAAACGTGCCAACTGTTCTCTTGCTTGGAGGACGAGTGGCAGCATCCGCGGCTTTAATATCAGCAGCAGATGAGAAGAAGGCATGGCTGCTTCTAGCTTGGGTGAGTACCGTGGCCGGGAACCTCTCGCTATTGGGATCAGCAGCCAACTTGATAGTATGTGAGCAGGCTCGCCAAGCCCCACACCTTGCATACAATTTGTCATTCTGGATTTTTAGTGTGTTTTTGATGTGGTAG

Protein Analysis

529

Amino Acids

57.2

Weight (kDa)

8.47

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 27 - 490 4.9e-93 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1220
AasI GACNNNNNNGTC 1 cut(s) 112
Acc16I TGCGCA 1 cut(s) 1114
AccB7I CCANNNNNTGG 2 cut(s) 197, 1023
AccII CGCG 1 cut(s) 1403
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 5 cut(s) 68, 419, 1305, 1401, 1403
AclWI GGATC 2 cut(s) 171, 1498
AcoI YGGCCR 2 cut(s) 1163, 1467
AcsI RAATTY 4 cut(s) 522, 549, 868, 1009
AcuI CTGAAG 1 cut(s) 795
AdeI CACNNNGTG 1 cut(s) 716
AfaI GTAC 4 cut(s) 390, 979, 1338, 1462
AfiI CCNNNNNNNGG 7 cut(s) 160, 197, 765, 919, 1023, 1177, 1470
AflIII ACRYGT 1 cut(s) 1101
AgeI ACCGGT 1 cut(s) 687
AgsI TTSAA 8 cut(s) 239, 256, 339, 727, 873, 1153, 1237, 1356
AjnI CCWGG 1 cut(s) 498
AjuI GAANNNNNNNTTGG 2 cut(s) 1021, 1053
AluBI AGCT 8 cut(s) 80, 509, 650, 739, 815, 908, 1316, 1451
AluI AGCT 8 cut(s) 80, 509, 650, 739, 815, 908, 1316, 1451
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 3 cut(s) 120, 812, 887
AlwI GGATC 2 cut(s) 171, 1498
AlwNI CAGNNNCTG 2 cut(s) 499, 739
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 4 cut(s) 199, 1093, 1163, 1467
ApeKI GCWGC 9 cut(s) 176, 470, 647, 1124, 1313, 1394, 1418, 1441, 1496
ApoI RAATTY 4 cut(s) 522, 549, 868, 1009
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AsiGI ACCGGT 1 cut(s) 687
AspLEI GCGC 2 cut(s) 1084, 1115
AspS9I GGNCC 1 cut(s) 1093
AsuC2I CCSGG 1 cut(s) 1471
AsuHPI GGTGA 4 cut(s) 343, 677, 687, 1468
AxyI CCTNAGG 1 cut(s) 794
BalI TGGCCA 1 cut(s) 1165
BanII GRGCYC 1 cut(s) 1281
BauI CACGAG 1 cut(s) 829
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 9 cut(s) 163, 482, 659, 1111, 1325, 1406, 1428, 1430, 1508
BccI CCATC 2 cut(s) 130, 1223
BciT130I CCWGG 1 cut(s) 500
BciVI GTATCC 1 cut(s) 1192
BclI TGATCA 1 cut(s) 1294
BcnI CCSGG 1 cut(s) 1471
BcoDI GTCTC 3 cut(s) 120, 812, 887
BfaI CTAG 6 cut(s) 32, 752, 948, 1136, 1172, 1448
BfmI CTRYAG 3 cut(s) 108, 468, 984
BfuI GTATCC 1 cut(s) 1192
Bme1390I CCNGG 2 cut(s) 500, 1471
BmgT120I GGNCC 1 cut(s) 1093
BmiI GGNNCC 4 cut(s) 800, 927, 1278, 1475
BmrFI CCNGG 2 cut(s) 500, 1471
BmsI GCATC 3 cut(s) 728, 1147, 1406
BpiI GAAGAC 1 cut(s) 648
BplI GAGNNNNNCTC 2 cut(s) 728, 760
BpmI CTGGAG 3 cut(s) 672, 730, 762
BpuEI CTTGAG 1 cut(s) 433
BpuMI CCSGG 1 cut(s) 1471
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 3 cut(s) 196, 1401, 1464
BsaWI WCCGGW 2 cut(s) 160, 687
BsaXI ACNNNNNCTCC 6 cut(s) 564, 594, 645, 675, 1374, 1404
Bsc4I CCNNNNNNNGG 7 cut(s) 160, 197, 765, 919, 1023, 1177, 1470
Bse118I RCCGGY 2 cut(s) 687, 1244
Bse1I ACTGG 2 cut(s) 779, 929
Bse21I CCTNAGG 1 cut(s) 794
Bse3DI GCAATG 2 cut(s) 135, 567
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 3 cut(s) 196, 1401, 1464
BseGI GGATG 7 cut(s) 424, 640, 719, 1038, 1162, 1234, 1397
BseLI CCNNNNNNNGG 7 cut(s) 160, 197, 765, 919, 1023, 1177, 1470
BseMI GCAATG 2 cut(s) 135, 567
BseMII CTCAG 6 cut(s) 372, 506, 746, 807, 813, 879
BseNI ACTGG 2 cut(s) 779, 929
BseRI GAGGAG 2 cut(s) 683, 905
BseXI GCAGC 9 cut(s) 163, 482, 659, 1111, 1325, 1406, 1428, 1430, 1508
BsgI GTGCAG 1 cut(s) 1110
Bsh1236I CGCG 1 cut(s) 1403
BshFI GGCC 4 cut(s) 201, 1095, 1165, 1469
BshTI ACCGGT 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 4 cut(s) 161, 688, 1245, 1470
BslFI GGGAC 3 cut(s) 68, 226, 1280
BslI CCNNNNNNNGG 7 cut(s) 160, 197, 765, 919, 1023, 1177, 1470
BsmAI GTCTC 3 cut(s) 120, 812, 887
BsmFI GGGAC 3 cut(s) 68, 226, 1280
BsmI GAATGC 2 cut(s) 589, 1248
BsnI GGCC 4 cut(s) 201, 1095, 1165, 1469
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 346, 1281
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 6 cut(s) 163, 184, 825, 950, 1294, 1490
BspACI CCGC 5 cut(s) 68, 419, 1305, 1401, 1403
BspANI GGCC 4 cut(s) 201, 1095, 1165, 1469
BspCNI CTCAG 6 cut(s) 373, 505, 745, 808, 814, 880
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 1403
BspLI GGNNCC 4 cut(s) 800, 927, 1278, 1475
BspMAI CTGCAG 2 cut(s) 112, 472
BspPI GGATC 2 cut(s) 171, 1498
BspTNI GGTCTC 1 cut(s) 120
BsrDI GCAATG 2 cut(s) 135, 567
BsrFI RCCGGY 2 cut(s) 687, 1244
BsrI ACTGG 2 cut(s) 779, 929
BssAI RCCGGY 2 cut(s) 687, 1244
BssECI CCNNGG 3 cut(s) 196, 1401, 1464
BssMI GATC 6 cut(s) 163, 184, 825, 950, 1294, 1490
BssSI CACGAG 1 cut(s) 829
BssT1I CCWWGG 1 cut(s) 196
Bst2BI CACGAG 1 cut(s) 829
Bst2UI CCWGG 1 cut(s) 500
Bst4CI ACNGT 5 cut(s) 708, 803, 1225, 1369, 1465
BstAPI GCANNNNNTGC 2 cut(s) 1121, 1319
BstC8I GCNNGC 4 cut(s) 438, 558, 1521, 1525
BstDEI CTNAG 7 cut(s) 381, 492, 732, 794, 816, 822, 888
BstDSI CCRYGG 2 cut(s) 1401, 1464
BstENI CCTNNNNNAGG 1 cut(s) 1175
BstF5I GGATG 7 cut(s) 424, 640, 719, 1038, 1162, 1234, 1397
BstFNI CGCG 1 cut(s) 1403
BstHHI GCGC 2 cut(s) 1084, 1115
BstKTI GATC 6 cut(s) 166, 187, 828, 953, 1297, 1493
BstMAI GTCTC 3 cut(s) 120, 812, 887
BstMBI GATC 6 cut(s) 163, 184, 825, 950, 1294, 1490
BstNI CCWGG 1 cut(s) 500
BstNSI RCATGY 1 cut(s) 1105
BstSCI CCNGG 2 cut(s) 498, 1469
BstSFI CTRYAG 3 cut(s) 108, 468, 984
BstUI CGCG 1 cut(s) 1403
BstV1I GCAGC 9 cut(s) 163, 482, 659, 1111, 1325, 1406, 1428, 1430, 1508
BstV2I GAAGAC 1 cut(s) 648
Bsu36I CCTNAGG 1 cut(s) 794
BsuI GTATCC 1 cut(s) 1192
BsuRI GGCC 4 cut(s) 201, 1095, 1165, 1469
BtgI CCRYGG 2 cut(s) 1401, 1464
BtsCI GGATG 7 cut(s) 424, 640, 719, 1038, 1162, 1234, 1397
BtsIMutI CAGTG 1 cut(s) 704
Cac8I GCNNGC 4 cut(s) 438, 558, 1521, 1525
CaiI CAGNNNCTG 2 cut(s) 499, 739
CfoI GCGC 2 cut(s) 1084, 1115
Cfr10I RCCGGY 2 cut(s) 687, 1244
Cfr13I GGNCC 1 cut(s) 1093
Cfr42I CCGCGG 1 cut(s) 1404
CseI GACGC 2 cut(s) 653, 867
CsiI ACCWGGT 1 cut(s) 498
Csp6I GTAC 4 cut(s) 389, 978, 1337, 1461
CspAI ACCGGT 1 cut(s) 687
CviAII CATG 6 cut(s) 1102, 1107, 1273, 1283, 1298, 1437
CviQI GTAC 4 cut(s) 389, 978, 1337, 1461
DdeI CTNAG 7 cut(s) 381, 492, 732, 794, 816, 822, 888
DpnI GATC 6 cut(s) 165, 186, 827, 952, 1296, 1492
DpnII GATC 6 cut(s) 163, 184, 825, 950, 1294, 1490
DraIII CACNNNGTG 1 cut(s) 716
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 2 cut(s) 1163, 1467
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 1281
Eco31I GGTCTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 795
Eco81I CCTNAGG 1 cut(s) 794
EcoNI CCTNNNNNAGG 1 cut(s) 1175
EcoRII CCWGG 1 cut(s) 498
EcoT14I CCWWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 1281
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 6 cut(s) 1105, 1110, 1276, 1286, 1301, 1440
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 3 cut(s) 68, 226, 1280
FatI CATG 6 cut(s) 1101, 1106, 1272, 1282, 1297, 1436
FbaI TGATCA 1 cut(s) 1294
FokI GGATG 7 cut(s) 411, 647, 706, 1045, 1169, 1241, 1384
FriOI GRGCYC 1 cut(s) 1281
FspBI CTAG 6 cut(s) 32, 752, 948, 1136, 1172, 1448
FspI TGCGCA 1 cut(s) 1114
GlaI GCGC 2 cut(s) 1083, 1114
GsuI CTGGAG 3 cut(s) 672, 730, 762
HaeIII GGCC 4 cut(s) 201, 1095, 1165, 1469
HapII CCGG 4 cut(s) 161, 688, 1245, 1470
HgaI GACGC 2 cut(s) 653, 867
HhaI GCGC 2 cut(s) 1084, 1115
Hin1II CATG 6 cut(s) 1105, 1110, 1276, 1286, 1301, 1440
Hin6I GCGC 2 cut(s) 1082, 1113
HinP1I GCGC 2 cut(s) 1082, 1113
HinfI GANTC 4 cut(s) 150, 315, 857, 989
HpaII CCGG 4 cut(s) 161, 688, 1245, 1470
HphI GGTGA 4 cut(s) 343, 677, 687, 1468
Hpy188I TCNGA 4 cut(s) 149, 495, 516, 939
HpyAV CCTTC 7 cut(s) 55, 625, 733, 819, 992, 1023, 1426
HpyCH4III ACNGT 5 cut(s) 708, 803, 1225, 1369, 1465
HpyCH4IV ACGT 2 cut(s) 1347, 1359
HpyF3I CTNAG 7 cut(s) 381, 492, 732, 794, 816, 822, 888
HpySE526I ACGT 2 cut(s) 1347, 1359
Hsp92II CATG 6 cut(s) 1105, 1110, 1276, 1286, 1301, 1440
HspAI GCGC 2 cut(s) 1082, 1113
Kpn2I TCCGGA 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 1294
KspI CCGCGG 1 cut(s) 1404
Kzo9I GATC 6 cut(s) 163, 184, 825, 950, 1294, 1490
LmnI GCTCC 3 cut(s) 293, 736, 1276
Lsp1109I GCAGC 9 cut(s) 163, 482, 659, 1111, 1325, 1406, 1428, 1430, 1508
LweI GCATC 3 cut(s) 728, 1147, 1406
MabI ACCWGGT 1 cut(s) 498
MaeI CTAG 6 cut(s) 32, 752, 948, 1136, 1172, 1448
MaeII ACGT 2 cut(s) 1347, 1359
MaeIII GTNAC 3 cut(s) 708, 1060, 1324
MalI GATC 6 cut(s) 165, 186, 827, 952, 1296, 1492
MboI GATC 6 cut(s) 163, 184, 825, 950, 1294, 1490
MboII GAAGA 4 cut(s) 6, 653, 1195, 1441
MfeI CAATTG 3 cut(s) 39, 96, 180
MhlI GDGCHC 2 cut(s) 346, 1281
MlsI TGGCCA 1 cut(s) 1165
MluNI TGGCCA 1 cut(s) 1165
MlyI GAGTC 4 cut(s) 159, 324, 866, 998
Mox20I TGGCCA 1 cut(s) 1165
MroI TCCGGA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 1165
MseI TTAA 2 cut(s) 1196, 1409
Msp20I TGGCCA 1 cut(s) 1165
MspA1I CMGCKG 4 cut(s) 80, 650, 815, 1403
MspI CCGG 4 cut(s) 161, 688, 1245, 1470
MspR9I CCNGG 2 cut(s) 500, 1471
MunI CAATTG 3 cut(s) 39, 96, 180
Mva1269I GAATGC 2 cut(s) 589, 1248
MvaI CCWGG 1 cut(s) 500
MvnI CGCG 1 cut(s) 1403
NciI CCSGG 1 cut(s) 1471
NdeII GATC 6 cut(s) 163, 184, 825, 950, 1294, 1490
NlaIII CATG 6 cut(s) 1105, 1110, 1276, 1286, 1301, 1440
NlaIV GGNNCC 4 cut(s) 800, 927, 1278, 1475
NmuCI GTSAC 1 cut(s) 708
NsbI TGCGCA 1 cut(s) 1114
NspI RCATGY 1 cut(s) 1105
PciI ACATGT 1 cut(s) 1101
PctI GAATGC 2 cut(s) 589, 1248
PflMI CCANNNNNTGG 2 cut(s) 197, 1023
PinAI ACCGGT 1 cut(s) 687
PleI GAGTC 4 cut(s) 158, 323, 865, 997
PpsI GAGTC 4 cut(s) 158, 323, 865, 997
PscI ACATGT 1 cut(s) 1101
PsiI TTATAA 1 cut(s) 1220
Psp6I CCWGG 1 cut(s) 498
PspGI CCWGG 1 cut(s) 498
PspN4I GGNNCC 4 cut(s) 800, 927, 1278, 1475
PspPI GGNCC 1 cut(s) 1093
PstI CTGCAG 2 cut(s) 112, 472
PstNI CAGNNNCTG 2 cut(s) 499, 739
PvuII CAGCTG 3 cut(s) 80, 650, 815
RsaI GTAC 4 cut(s) 390, 979, 1338, 1462
RsaNI GTAC 4 cut(s) 389, 978, 1337, 1461
SacII CCGCGG 1 cut(s) 1404
SaqAI TTAA 2 cut(s) 1196, 1409
Sau3AI GATC 6 cut(s) 163, 184, 825, 950, 1294, 1490
Sau96I GGNCC 1 cut(s) 1093
SchI GAGTC 4 cut(s) 159, 324, 866, 998
ScrFI CCNGG 2 cut(s) 500, 1471
SduI GDGCHC 2 cut(s) 346, 1281
SexAI ACCWGGT 1 cut(s) 498
SfaNI GCATC 3 cut(s) 728, 1147, 1406
SfcI CTRYAG 3 cut(s) 108, 468, 984
Sfr303I CCGCGG 1 cut(s) 1404
SgrBI CCGCGG 1 cut(s) 1404
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
SsiI CCGC 5 cut(s) 68, 419, 1305, 1401, 1403
SspI AATATT 1 cut(s) 460
SspMI CTAG 6 cut(s) 32, 752, 948, 1136, 1172, 1448
StyD4I CCNGG 2 cut(s) 498, 1469
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 5 cut(s) 708, 803, 1225, 1369, 1465
TaiI ACGT 2 cut(s) 1350, 1362
TatI WGTACW 3 cut(s) 388, 977, 1336
TauI GCSGC 1 cut(s) 1406
Tru1I TTAA 2 cut(s) 1196, 1409
Tru9I TTAA 2 cut(s) 1196, 1409
TscAI CASTG 1 cut(s) 711
TseFI GTSAC 1 cut(s) 708
TseI GCWGC 9 cut(s) 176, 470, 647, 1124, 1313, 1394, 1418, 1441, 1496
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 1 cut(s) 1261
TspRI CASTG 1 cut(s) 711
Van91I CCANNNNNTGG 2 cut(s) 197, 1023
XagI CCTNNNNNAGG 1 cut(s) 1175
XapI RAATTY 4 cut(s) 522, 549, 868, 1009
XceI RCATGY 1 cut(s) 1105
XcmI CCANNNNNNNNNTGG 1 cut(s) 1260
XspI CTAG 6 cut(s) 32, 752, 948, 1136, 1172, 1448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.