RLG00000026488

Transporter

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
3355468 .. 3357581
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026488

Sequence Viewer

Length: 1464 bp
ATGCTGATGGTTGTGTTCCGAGTCTTAACTCCGGATCAAGCCTACGCTGCAATTGATCTCCCAATCATTGGCCTTTTGTTTGGGACAATGGTTGTGAGTATCTATCTTGAAAGAGCAGATATGTTCAAGTATTTGGGGAAGTTGCTCTTGTGGAAAAGCAAAGGAGCAAAGGACTTGATATGTAGAGTCTGTTTGATTTCTGCCATTTCAAGTGCTCTTTTCACCAATGACACCGCTTGCGTGGTTTTGACCGAGTTTGTACTAAAAGTTGCAAGACAACACAACTTACCGCCTCGTCCATTCCTGCTTGCACTTGCCACAAGTGCAAATATTGGGTCTGCAGCAACCCCAATCGGCAATCCTCAGAACCTGGTTATAGCTGTTCAGAGTAACATTCCTTTTGGAAAGTTTGTTTTAGGAATTTTCCCTGCAATGCTTGTAGGAGTTTGTGTGAATGCTCTGCTTCTTTTGTGTATGTTCTGGAAGTTGTTGTCTATCGAGAAGGATGTGGAAGATGCAACTGGAGAGGTTGTCGGGGAGGAGGATGTGATTTATCATACGTTTTCACCAGCCTTCAACTCACAGGAAGCCAAGAGTCTGCTAGGTTCTCCAGTTTTTGAGAACTGTAGGAACCGTGTGCCTTCAGCTGAGACCGAGATCAAGAGGGTTTCAGGTGCTGGTACTTTTGAGTCTGCAAGAAATTCAAGTGCGTCAAAGACTGAGGAGACAAATGATGTGGCTTCCCAGAAAAAGGAGGAACCAGTTGCTCCGAAAAGGACTCCATCAAAGGAAAAACTTGGAGATAATTGTACCACTACAGAGTCTTTGGAAGGAAAGGAAAATTTGACCACAAAATGGAGAAGGATGTTGTTGAAATCTGGTGTTTATTTTGTTACCATAGGAATGTTGGTTGCGTTTCTTATGGGCCTGAACATGTCATGGTGCGCGATTACTGCTGCACTTGCTCTAGTTGTTCTTGATTTCAAGGATGCTCGGCCAAGCCTAGATAAGGTATCCTATTCACTTTTAATTTTCTTCTGTGGTATGTTTATAACTGTGGATGGCTTCAACAAAACTGGCATTCCAAGCACTCTTTGGGACTTCATGGAGCCCCATGCGAAAATTGATCATGTTAGCGGAATAGCAATTCTTGCTGTTACCATACTTGTACTATCAAACGTGACTTCAAACGTGCCAACTGTTCTCTTGCTTGGAAGACGAGTGGCAGCATCCGCAGCTTTAATATCAGCAGCGGATGAGAAGAAGGCATGGCTGCTTCTAGCTTGGATGAGCACCGTGGCCGGGAACCTCTCGCTATTGGGATCAGCAGCCAACTTGATAGTATGTGAACAGGCTCGCCAACCTCCACACCTTGCATACAATTTGTCATTCTGGAGCCATCTCAAATTTGGGGTGCCGTCCACTATTATAGTCACTGCTATTGGTTTGACACTGATAAGATGA

Protein Analysis

488

Amino Acids

52.85

Weight (kDa)

8.44

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 1 - 434 4e-90 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1052
AccB1I GGYRCC 1 cut(s) 1414
AccB7I CCANNNNNTGG 2 cut(s) 68, 855
AccII CGCG 1 cut(s) 947
AccIII TCCGGA 1 cut(s) 31
AciI CCGC 5 cut(s) 234, 290, 1137, 1233, 1253
AclWI GGATC 2 cut(s) 42, 1330
AcoI YGGCCR 2 cut(s) 995, 1299
AcsI RAATTY 4 cut(s) 420, 700, 841, 1406
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 4 cut(s) 261, 682, 811, 1170
AfiI CCNNNNNNNGG 5 cut(s) 68, 751, 855, 1009, 1302
AflIII ACRYGT 1 cut(s) 933
AgsI TTSAA 9 cut(s) 110, 127, 210, 577, 705, 874, 985, 1069, 1188
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 4 cut(s) 380, 647, 1238, 1283
AluI AGCT 4 cut(s) 380, 647, 1238, 1283
Alw21I GWGCWC 2 cut(s) 217, 1295
Alw26I GTCTC 2 cut(s) 644, 719
AlwI GGATC 2 cut(s) 42, 1330
AlwNI CAGNNNCTG 2 cut(s) 370, 677
Aor13HI TCCGGA 1 cut(s) 31
AoxI GGCC 4 cut(s) 70, 925, 995, 1299
ApeKI GCWGC 8 cut(s) 47, 341, 956, 1226, 1235, 1250, 1273, 1328
ApoI RAATTY 4 cut(s) 420, 700, 841, 1406
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AspLEI GCGC 1 cut(s) 947
AspS9I GGNCC 1 cut(s) 925
AsuC2I CCSGG 1 cut(s) 1303
AsuHPI GGTGA 2 cut(s) 214, 558
BanI GGYRCC 1 cut(s) 1414
BanII GRGCYC 1 cut(s) 1113
BbsI GAAGAC 1 cut(s) 1222
Bbv12I GWGCWC 2 cut(s) 217, 1295
BbvI GCAGC 8 cut(s) 34, 353, 943, 1238, 1247, 1260, 1262, 1340
BccI CCATC 3 cut(s) 790, 1055, 1407
BceAI ACGGC 1 cut(s) 1402
BciT130I CCWGG 1 cut(s) 371
BciVI GTATCC 1 cut(s) 1024
BclI TGATCA 1 cut(s) 1126
BcnI CCSGG 1 cut(s) 1303
BcoDI GTCTC 2 cut(s) 644, 719
BfaI CTAG 4 cut(s) 602, 968, 1004, 1280
BfmI CTRYAG 3 cut(s) 339, 625, 816
BfuI GTATCC 1 cut(s) 1024
BisI GCNGC 8 cut(s) 48, 342, 957, 1227, 1236, 1251, 1274, 1329
BlsI GCNGC 8 cut(s) 49, 343, 958, 1228, 1237, 1252, 1275, 1330
Bme1390I CCNGG 2 cut(s) 371, 1303
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 6 cut(s) 632, 759, 1110, 1307, 1397, 1416
BmrFI CCNGG 2 cut(s) 371, 1303
BmsI GCATC 3 cut(s) 505, 979, 1238
BpiI GAAGAC 1 cut(s) 1222
BpmI CTGGAG 3 cut(s) 543, 594, 1414
BpuMI CCSGG 1 cut(s) 1303
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 1 cut(s) 1296
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 4 cut(s) 435, 465, 516, 546
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 751, 855, 1009, 1302
Bse1I ACTGG 4 cut(s) 526, 611, 761, 1081
Bse3DI GCAATG 1 cut(s) 438
BseAI TCCGGA 1 cut(s) 31
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 1296
BseGI GGATG 8 cut(s) 511, 550, 870, 994, 1066, 1229, 1261, 1293
BseLI CCNNNNNNNGG 5 cut(s) 68, 751, 855, 1009, 1302
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 3 cut(s) 377, 639, 711
BseNI ACTGG 4 cut(s) 526, 611, 761, 1081
BseRI GAGGAG 2 cut(s) 554, 737
BseXI GCAGC 8 cut(s) 34, 353, 943, 1238, 1247, 1260, 1262, 1340
BsgI GTGCAG 1 cut(s) 942
Bsh1236I CGCG 1 cut(s) 947
BshFI GGCC 4 cut(s) 72, 927, 997, 1301
BshNI GGYRCC 1 cut(s) 1414
BsiHKAI GWGCWC 2 cut(s) 217, 1295
BsiSI CCGG 2 cut(s) 32, 1302
BslFI GGGAC 2 cut(s) 97, 1112
BslI CCNNNNNNNGG 5 cut(s) 68, 751, 855, 1009, 1302
BsmAI GTCTC 2 cut(s) 644, 719
BsmFI GGGAC 2 cut(s) 97, 1112
BsmI GAATGC 2 cut(s) 460, 1080
BsnI GGCC 4 cut(s) 72, 927, 997, 1301
Bso31I GGTCTC 1 cut(s) 644
Bsp1286I GDGCHC 3 cut(s) 217, 1113, 1295
Bsp13I TCCGGA 1 cut(s) 31
Bsp143I GATC 5 cut(s) 34, 55, 657, 1126, 1322
BspACI CCGC 5 cut(s) 234, 290, 1137, 1233, 1253
BspANI GGCC 4 cut(s) 72, 927, 997, 1301
BspCNI CTCAG 3 cut(s) 376, 640, 712
BspEI TCCGGA 1 cut(s) 31
BspFNI CGCG 1 cut(s) 947
BspLI GGNNCC 6 cut(s) 632, 759, 1110, 1307, 1397, 1416
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 2 cut(s) 42, 1330
BspT107I GGYRCC 1 cut(s) 1414
BspTNI GGTCTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 438
BsrI ACTGG 4 cut(s) 526, 611, 761, 1081
BssECI CCNNGG 1 cut(s) 1296
BssMI GATC 5 cut(s) 34, 55, 657, 1126, 1322
Bst2UI CCWGG 1 cut(s) 371
Bst4CI ACNGT 5 cut(s) 626, 635, 1057, 1201, 1297
BstAPI GCANNNNNTGC 1 cut(s) 1151
BstC8I GCNNGC 3 cut(s) 238, 309, 1357
BstDEI CTNAG 3 cut(s) 363, 648, 720
BstDSI CCRYGG 1 cut(s) 1296
BstENI CCTNNNNNAGG 1 cut(s) 1007
BstF5I GGATG 8 cut(s) 511, 550, 870, 994, 1066, 1229, 1261, 1293
BstFNI CGCG 1 cut(s) 947
BstHHI GCGC 1 cut(s) 947
BstKTI GATC 5 cut(s) 37, 58, 660, 1129, 1325
BstMAI GTCTC 2 cut(s) 644, 719
BstMBI GATC 5 cut(s) 34, 55, 657, 1126, 1322
BstMWI GCNNNNNNNGC 8 cut(s) 47, 323, 953, 962, 1086, 1151, 1232, 1235
BstNI CCWGG 1 cut(s) 371
BstNSI RCATGY 1 cut(s) 937
BstSCI CCNGG 2 cut(s) 369, 1301
BstSFI CTRYAG 3 cut(s) 339, 625, 816
BstUI CGCG 1 cut(s) 947
BstV1I GCAGC 8 cut(s) 34, 353, 943, 1238, 1247, 1260, 1262, 1340
BstV2I GAAGAC 1 cut(s) 1222
BsuI GTATCC 1 cut(s) 1024
BsuRI GGCC 4 cut(s) 72, 927, 997, 1301
BtgI CCRYGG 1 cut(s) 1296
BtsCI GGATG 8 cut(s) 511, 550, 870, 994, 1066, 1229, 1261, 1293
BtsI GCAGTG 1 cut(s) 1434
BtsIMutI CAGTG 2 cut(s) 1434, 1451
Cac8I GCNNGC 3 cut(s) 238, 309, 1357
CaiI CAGNNNCTG 2 cut(s) 370, 677
CfoI GCGC 1 cut(s) 947
Cfr13I GGNCC 1 cut(s) 925
CseI GACGC 1 cut(s) 699
CsiI ACCWGGT 1 cut(s) 369
Csp6I GTAC 4 cut(s) 260, 681, 810, 1169
CspCI CAANNNNNGTGG 2 cut(s) 717, 752
CviAII CATG 6 cut(s) 934, 939, 1105, 1115, 1130, 1269
CviQI GTAC 4 cut(s) 260, 681, 810, 1169
DdeI CTNAG 3 cut(s) 363, 648, 720
DpnI GATC 5 cut(s) 36, 57, 659, 1128, 1324
DpnII GATC 5 cut(s) 34, 55, 657, 1126, 1322
EaeI YGGCCR 2 cut(s) 995, 1299
Eco24I GRGCYC 1 cut(s) 1113
Eco31I GGTCTC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 627
EcoNI CCTNNNNNAGG 1 cut(s) 1007
EcoRII CCWGG 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 1113
FaeI CATG 6 cut(s) 937, 942, 1108, 1118, 1133, 1272
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 2 cut(s) 97, 1112
FatI CATG 6 cut(s) 933, 938, 1104, 1114, 1129, 1268
FbaI TGATCA 1 cut(s) 1126
Fnu4HI GCNGC 8 cut(s) 48, 342, 957, 1227, 1236, 1251, 1274, 1329
FokI GGATG 8 cut(s) 518, 557, 877, 1001, 1073, 1216, 1268, 1300
FriOI GRGCYC 1 cut(s) 1113
Fsp4HI GCNGC 8 cut(s) 48, 342, 957, 1227, 1236, 1251, 1274, 1329
FspBI CTAG 4 cut(s) 602, 968, 1004, 1280
GlaI GCGC 1 cut(s) 946
GluI GCNGC 8 cut(s) 48, 342, 957, 1227, 1236, 1251, 1274, 1329
GsuI CTGGAG 3 cut(s) 543, 594, 1414
HaeIII GGCC 4 cut(s) 72, 927, 997, 1301
HapII CCGG 2 cut(s) 32, 1302
HgaI GACGC 1 cut(s) 699
HhaI GCGC 1 cut(s) 947
Hin1II CATG 6 cut(s) 937, 942, 1108, 1118, 1133, 1272
Hin6I GCGC 1 cut(s) 945
HinP1I GCGC 1 cut(s) 945
HinfI GANTC 6 cut(s) 21, 186, 595, 689, 778, 821
HpaII CCGG 2 cut(s) 32, 1302
HphI GGTGA 2 cut(s) 214, 558
Hpy166II GTNNAC 2 cut(s) 1349, 1422
Hpy188I TCNGA 4 cut(s) 20, 366, 387, 771
Hpy188III TCNNGA 7 cut(s) 32, 107, 481, 499, 661, 977, 1393
Hpy8I GTNNAC 2 cut(s) 1349, 1422
HpyAV CCTTC 6 cut(s) 496, 583, 651, 824, 855, 1258
HpyCH4III ACNGT 5 cut(s) 626, 635, 1057, 1201, 1297
HpyCH4IV ACGT 3 cut(s) 560, 1179, 1191
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 323, 953, 962, 1086, 1151, 1232, 1235
HpyF3I CTNAG 3 cut(s) 363, 648, 720
HpySE526I ACGT 3 cut(s) 560, 1179, 1191
Hsp92II CATG 6 cut(s) 937, 942, 1108, 1118, 1133, 1272
HspAI GCGC 1 cut(s) 945
Kpn2I TCCGGA 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 1126
Kzo9I GATC 5 cut(s) 34, 55, 657, 1126, 1322
LmnI GCTCC 4 cut(s) 164, 772, 1108, 1395
Lsp1109I GCAGC 8 cut(s) 34, 353, 943, 1238, 1247, 1260, 1262, 1340
LweI GCATC 3 cut(s) 505, 979, 1238
MabI ACCWGGT 1 cut(s) 369
MaeI CTAG 4 cut(s) 602, 968, 1004, 1280
MaeII ACGT 3 cut(s) 560, 1179, 1191
MaeIII GTNAC 5 cut(s) 389, 892, 1156, 1180, 1432
MalI GATC 5 cut(s) 36, 57, 659, 1128, 1324
MboI GATC 5 cut(s) 34, 55, 657, 1126, 1322
MboII GAAGA 4 cut(s) 524, 1027, 1227, 1273
MfeI CAATTG 1 cut(s) 51
MhlI GDGCHC 3 cut(s) 217, 1113, 1295
MlyI GAGTC 6 cut(s) 30, 195, 604, 698, 772, 830
MroI TCCGGA 1 cut(s) 31
MseI TTAA 3 cut(s) 26, 1028, 1241
MslI CAYNNNNRTG 1 cut(s) 902
MspA1I CMGCKG 2 cut(s) 647, 1253
MspI CCGG 2 cut(s) 32, 1302
MspR9I CCNGG 2 cut(s) 371, 1303
MunI CAATTG 1 cut(s) 51
Mva1269I GAATGC 2 cut(s) 460, 1080
MvaI CCWGG 1 cut(s) 371
MvnI CGCG 1 cut(s) 947
MwoI GCNNNNNNNGC 8 cut(s) 47, 323, 953, 962, 1086, 1151, 1232, 1235
NciI CCSGG 1 cut(s) 1303
NdeII GATC 5 cut(s) 34, 55, 657, 1126, 1322
NlaIII CATG 6 cut(s) 937, 942, 1108, 1118, 1133, 1272
NlaIV GGNNCC 6 cut(s) 632, 759, 1110, 1307, 1397, 1416
NmeAIII GCCGAG 1 cut(s) 973
NmuCI GTSAC 2 cut(s) 1180, 1432
NspI RCATGY 1 cut(s) 937
PciI ACATGT 1 cut(s) 933
PctI GAATGC 2 cut(s) 460, 1080
PflMI CCANNNNNTGG 2 cut(s) 68, 855
PkrI GCNGC 8 cut(s) 49, 343, 958, 1228, 1237, 1252, 1275, 1330
PleI GAGTC 6 cut(s) 29, 194, 603, 697, 772, 829
PpsI GAGTC 6 cut(s) 29, 194, 603, 697, 772, 829
PscI ACATGT 1 cut(s) 933
PsiI TTATAA 1 cut(s) 1052
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
PspN4I GGNNCC 6 cut(s) 632, 759, 1110, 1307, 1397, 1416
PspPI GGNCC 1 cut(s) 925
PstI CTGCAG 1 cut(s) 343
PstNI CAGNNNCTG 2 cut(s) 370, 677
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 4 cut(s) 261, 682, 811, 1170
RsaNI GTAC 4 cut(s) 260, 681, 810, 1169
RseI CAYNNNNRTG 1 cut(s) 902
SaqAI TTAA 3 cut(s) 26, 1028, 1241
SatI GCNGC 8 cut(s) 48, 342, 957, 1227, 1236, 1251, 1274, 1329
Sau3AI GATC 5 cut(s) 34, 55, 657, 1126, 1322
Sau96I GGNCC 1 cut(s) 925
SchI GAGTC 6 cut(s) 30, 195, 604, 698, 772, 830
ScrFI CCNGG 2 cut(s) 371, 1303
SduI GDGCHC 3 cut(s) 217, 1113, 1295
SexAI ACCWGGT 1 cut(s) 369
SfaNI GCATC 3 cut(s) 505, 979, 1238
SfcI CTRYAG 3 cut(s) 339, 625, 816
SmiMI CAYNNNNRTG 1 cut(s) 902
SsiI CCGC 5 cut(s) 234, 290, 1137, 1233, 1253
SspI AATATT 1 cut(s) 331
SspMI CTAG 4 cut(s) 602, 968, 1004, 1280
StyD4I CCNGG 2 cut(s) 369, 1301
TaaI ACNGT 5 cut(s) 626, 635, 1057, 1201, 1297
TaiI ACGT 3 cut(s) 563, 1182, 1194
TaqI TCGA 1 cut(s) 498
TaqII GACCGA 2 cut(s) 266, 668
TatI WGTACW 2 cut(s) 259, 1168
Tru1I TTAA 3 cut(s) 26, 1028, 1241
Tru9I TTAA 3 cut(s) 26, 1028, 1241
TscAI CASTG 2 cut(s) 1441, 1458
TseFI GTSAC 2 cut(s) 1180, 1432
TseI GCWGC 8 cut(s) 47, 341, 956, 1226, 1235, 1250, 1273, 1328
Tsp45I GTSAC 2 cut(s) 1180, 1432
TspDTI ATGAA 1 cut(s) 1093
TspRI CASTG 2 cut(s) 1441, 1458
Van91I CCANNNNNTGG 2 cut(s) 68, 855
XagI CCTNNNNNAGG 1 cut(s) 1007
XapI RAATTY 4 cut(s) 420, 700, 841, 1406
XceI RCATGY 1 cut(s) 937
XcmI CCANNNNNNNNNTGG 3 cut(s) 904, 1092, 1406
XspI CTAG 4 cut(s) 602, 968, 1004, 1280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.