Rh1AG426300

Transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
65503027 .. 65510491
7465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG426300.1

Sequence Viewer

Length: 1536 bp
ATGGCTTCTTCTGTCAAAGTGGTTCTAGGCTCAATTGCCTTTGCAACATTCTGGATATTGGCGGTGTTTCCGGCTGTCCCTTTTCTGCCAATTGGGAGGACTGCAGGGTCTCTTTTTGGGGCAATGCTGATGGTTGTGTTCCGAGTCCTAACTCCGGATCAAGCCTACGCTGCAATTGATCTCCCAATCATTGGACTTTTGTTTGGGACAATGGTTGTGAGTATCTATCTTGAAAGAGCAGATATGTTCAAGTATTTGGGCAAGTTACTCTTGTGGAAAAGCCAAGGAGCAAAGGACTTGATATGTAGAGTCTGTTTGATTTCTGCCATTTCAAGTGCTCTGTTAACCAATGACACCGCTTGCGTGGTTTTGACCGAGTTTGTACTAAAAGTTGCAAAACAACACAACTTACCGCCTCGTCCGTTCCTGCTTGCACTTGCCACAAGTGCAAATATTGGGTCTGCAGCAACCCCAATCGGCAATCCTCAGAACCTGGTTATAGCTGTTCGGAGTAACATTCCTTTTGGAAAGTTTGTTTTAGGAATTTTCCCTGCAATGCTTGTAGGAGTTTGTGTGAATGCTTTGCTTCTTTTGTGTATGTTCTGGAAGTTGTTGTTTATCCAGAAGGATGTGGAAGACGCAACTGGAGAGGTTGTCGGGGAGGAGGATGTGATTTCTCATCGGTTTTCACCAGCCTTCAACCCAGAGGAAACCAAGAGTCTGCTAGGTTCTCCATTTGTTGAGAACCGTGGGAACCGTGTGCCTTCAGCTGAGAACGAGATCAAGAGGGTTTCAAGTGCTGGTACTTTTGAGTCTGCAAGAAATTCAAGTGCGTCAAAGACTGAGGAGACAAATGATGTGGCTTCCCAGAAAAAGGAGGAACCAGTTGCTCTGAAAATGACTAGATCAAAGGAAAAACTTGGAGATAATTGTACTGCTACAGAGTCTTTGGAAGGAAAGGAAAATTTGACCACAAAATGGAGAAGGATGTTGTGGAAATCTGGCGTTTATTTTGTTACCATAGGAATGTTGGTTGCGTTTCTTATGGGCCTGAGCATGTCATGGTGCGCGATTACTGCTGCACTTGCTCTAGTTGTTCTTGATTTCAAGGATGCTCGGCCATGCCTAGAAAAGGTATCATATTCACTTTTAATTTTCTTCTGTGGTATGTTTATAACTGTGGATGGCTTCAACAAAACTGAAATTCCAAGCACTCTTTGGCACTTCATGGAGCCCCATGCGAAAATTGATCATGTTGGCGGAATAGCAGTTCTTGCTGTTACCATACTCGTACTATCAAACGTGGCTTCAAACGTGCCAACTGTTCTCTTGCTTGGAGGACGAGTGGCAGCATCCGCAGCTTCAATATCAGCAGCGGATGAGAAGAAGGCATGGCTGCTTCTAGCTTGGGTGAGCACCGTGGCCGGGAACCTCTCGCTAATGGGATCAGCAGCCAACTTGATACTAACCCAGTTGGTTTCAGTAGCTCGGATTTTCTTGCAGCTTCTGAGAATTAGAGTTTTCGTTATGTGCTGA

Protein Analysis

511

Amino Acids

55.3

Weight (kDa)

8.82

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 25 - 475 7.5e-92 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1175
AasI GACNNNNNNGTC 1 cut(s) 106
AccB7I CCANNNNNTGG 2 cut(s) 191, 978
AccII CGCG 1 cut(s) 1070
AccIII TCCGGA 1 cut(s) 154
AciI CCGC 6 cut(s) 62, 357, 413, 1260, 1356, 1376
AclWI GGATC 2 cut(s) 165, 1453
AcoI YGGCCR 2 cut(s) 1118, 1422
AcsI RAATTY 4 cut(s) 543, 823, 964, 1203
AcuI CTGAAG 1 cut(s) 750
AfaI GTAC 4 cut(s) 384, 805, 934, 1293
AfiI CCNNNNNNNGG 6 cut(s) 154, 191, 874, 978, 1132, 1425
AjnI CCWGG 1 cut(s) 492
AloI GAACNNNNNNTCC 2 cut(s) 1254, 1286
AluBI AGCT 6 cut(s) 503, 770, 1361, 1406, 1487, 1504
AluI AGCT 6 cut(s) 503, 770, 1361, 1406, 1487, 1504
Alw21I GWGCWC 2 cut(s) 340, 1418
Alw26I GTCTC 2 cut(s) 114, 842
AlwI GGATC 2 cut(s) 165, 1453
AlwNI CAGNNNCTG 2 cut(s) 493, 1507
Aor13HI TCCGGA 1 cut(s) 154
AoxI GGCC 3 cut(s) 1048, 1118, 1422
ApeKI GCWGC 9 cut(s) 170, 464, 1079, 1349, 1358, 1373, 1396, 1451, 1501
ApoI RAATTY 4 cut(s) 543, 823, 964, 1203
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AspLEI GCGC 1 cut(s) 1070
AspS9I GGNCC 1 cut(s) 1048
AsuC2I CCSGG 1 cut(s) 1426
AsuHPI GGTGA 2 cut(s) 681, 1423
BanII GRGCYC 1 cut(s) 1236
BbsI GAAGAC 1 cut(s) 642
Bbv12I GWGCWC 2 cut(s) 340, 1418
BbvI GCAGC 9 cut(s) 157, 476, 1066, 1361, 1370, 1383, 1385, 1463, 1513
BccI CCATC 2 cut(s) 124, 1178
BciT130I CCWGG 1 cut(s) 494
BclI TGATCA 1 cut(s) 1249
BcnI CCSGG 1 cut(s) 1426
BcoDI GTCTC 2 cut(s) 114, 842
BfaI CTAG 6 cut(s) 26, 725, 903, 1091, 1127, 1403
BfmI CTRYAG 3 cut(s) 102, 462, 939
BisI GCNGC 9 cut(s) 171, 465, 1080, 1350, 1359, 1374, 1397, 1452, 1502
BlsI GCNGC 9 cut(s) 172, 466, 1081, 1351, 1360, 1375, 1398, 1453, 1503
Bme1390I CCNGG 2 cut(s) 494, 1426
BmgT120I GGNCC 1 cut(s) 1048
BmiI GGNNCC 4 cut(s) 755, 882, 1233, 1430
BmrFI CCNGG 2 cut(s) 494, 1426
BmrI ACTGGG 1 cut(s) 1465
BmsI GCATC 2 cut(s) 1102, 1361
BmuI ACTGGG 1 cut(s) 1465
BpiI GAAGAC 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 1052
BpuMI CCSGG 1 cut(s) 1426
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 283, 748, 1419
BsaWI WCCGGW 1 cut(s) 154
BsaXI ACNNNNNCTCC 6 cut(s) 558, 588, 639, 669, 1329, 1359
Bsc4I CCNNNNNNNGG 6 cut(s) 154, 191, 874, 978, 1132, 1425
Bse1I ACTGG 3 cut(s) 649, 884, 1471
Bse3DI GCAATG 2 cut(s) 129, 561
BseAI TCCGGA 1 cut(s) 154
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 3 cut(s) 283, 748, 1419
BseGI GGATG 7 cut(s) 634, 673, 993, 1117, 1189, 1352, 1384
BseLI CCNNNNNNNGG 6 cut(s) 154, 191, 874, 978, 1132, 1425
BseMI GCAATG 2 cut(s) 129, 561
BseMII CTCAG 5 cut(s) 500, 762, 834, 1043, 1499
BseNI ACTGG 3 cut(s) 649, 884, 1471
BseRI GAGGAG 2 cut(s) 677, 860
BseXI GCAGC 9 cut(s) 157, 476, 1066, 1361, 1370, 1383, 1385, 1463, 1513
BsgI GTGCAG 1 cut(s) 1065
Bsh1236I CGCG 1 cut(s) 1070
BshFI GGCC 3 cut(s) 1050, 1120, 1424
BsiHKAI GWGCWC 2 cut(s) 340, 1418
BsiSI CCGG 3 cut(s) 71, 155, 1425
BslFI GGGAC 2 cut(s) 62, 220
BslI CCNNNNNNNGG 6 cut(s) 154, 191, 874, 978, 1132, 1425
BsmAI GTCTC 2 cut(s) 114, 842
BsmFI GGGAC 2 cut(s) 62, 220
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 3 cut(s) 1050, 1120, 1424
Bso31I GGTCTC 1 cut(s) 114
Bsp1286I GDGCHC 3 cut(s) 340, 1236, 1418
Bsp13I TCCGGA 1 cut(s) 154
Bsp143I GATC 6 cut(s) 157, 178, 780, 905, 1249, 1445
BspACI CCGC 6 cut(s) 62, 357, 413, 1260, 1356, 1376
BspANI GGCC 3 cut(s) 1050, 1120, 1424
BspCNI CTCAG 5 cut(s) 499, 763, 835, 1044, 1500
BspEI TCCGGA 1 cut(s) 154
BspFNI CGCG 1 cut(s) 1070
BspLI GGNNCC 4 cut(s) 755, 882, 1233, 1430
BspMAI CTGCAG 2 cut(s) 106, 466
BspPI GGATC 2 cut(s) 165, 1453
BspTNI GGTCTC 1 cut(s) 114
BsrDI GCAATG 2 cut(s) 129, 561
BsrI ACTGG 3 cut(s) 649, 884, 1471
BssECI CCNNGG 3 cut(s) 283, 748, 1419
BssMI GATC 6 cut(s) 157, 178, 780, 905, 1249, 1445
BssT1I CCWWGG 1 cut(s) 283
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 5 cut(s) 749, 758, 1180, 1324, 1420
BstAPI GCANNNNNTGC 1 cut(s) 1274
BstC8I GCNNGC 2 cut(s) 361, 432
BstDEI CTNAG 5 cut(s) 486, 771, 843, 1052, 1508
BstDSI CCRYGG 2 cut(s) 748, 1419
BstENI CCTNNNNNAGG 1 cut(s) 1130
BstF5I GGATG 7 cut(s) 634, 673, 993, 1117, 1189, 1352, 1384
BstFNI CGCG 1 cut(s) 1070
BstHHI GCGC 1 cut(s) 1070
BstKTI GATC 6 cut(s) 160, 181, 783, 908, 1252, 1448
BstMAI GTCTC 2 cut(s) 114, 842
BstMBI GATC 6 cut(s) 157, 178, 780, 905, 1249, 1445
BstMWI GCNNNNNNNGC 7 cut(s) 170, 446, 1076, 1085, 1274, 1355, 1358
BstNI CCWGG 1 cut(s) 494
BstNSI RCATGY 1 cut(s) 1060
BstSCI CCNGG 2 cut(s) 492, 1424
BstSFI CTRYAG 3 cut(s) 102, 462, 939
BstUI CGCG 1 cut(s) 1070
BstV1I GCAGC 9 cut(s) 157, 476, 1066, 1361, 1370, 1383, 1385, 1463, 1513
BstV2I GAAGAC 1 cut(s) 642
BsuRI GGCC 3 cut(s) 1050, 1120, 1424
BtgI CCRYGG 2 cut(s) 748, 1419
BtsCI GGATG 7 cut(s) 634, 673, 993, 1117, 1189, 1352, 1384
Cac8I GCNNGC 2 cut(s) 361, 432
CaiI CAGNNNCTG 2 cut(s) 493, 1507
CfoI GCGC 1 cut(s) 1070
Cfr13I GGNCC 1 cut(s) 1048
CseI GACGC 2 cut(s) 647, 822
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 4 cut(s) 383, 804, 933, 1292
CspCI CAANNNNNGTGG 2 cut(s) 840, 875
CviAII CATG 7 cut(s) 1057, 1062, 1122, 1228, 1238, 1253, 1392
CviQI GTAC 4 cut(s) 383, 804, 933, 1292
DdeI CTNAG 5 cut(s) 486, 771, 843, 1052, 1508
DpnI GATC 6 cut(s) 159, 180, 782, 907, 1251, 1447
DpnII GATC 6 cut(s) 157, 178, 780, 905, 1249, 1445
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 2 cut(s) 1118, 1422
EciI GGCGGA 1 cut(s) 1275
Eco130I CCWWGG 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 1236
Eco31I GGTCTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 750
EcoNI CCTNNNNNAGG 1 cut(s) 1130
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 1236
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 7 cut(s) 1060, 1065, 1125, 1231, 1241, 1256, 1395
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 2 cut(s) 62, 220
FatI CATG 7 cut(s) 1056, 1061, 1121, 1227, 1237, 1252, 1391
FbaI TGATCA 1 cut(s) 1249
Fnu4HI GCNGC 9 cut(s) 171, 465, 1080, 1350, 1359, 1374, 1397, 1452, 1502
FokI GGATG 7 cut(s) 641, 680, 1000, 1124, 1196, 1339, 1391
FriOI GRGCYC 1 cut(s) 1236
Fsp4HI GCNGC 9 cut(s) 171, 465, 1080, 1350, 1359, 1374, 1397, 1452, 1502
FspBI CTAG 6 cut(s) 26, 725, 903, 1091, 1127, 1403
GlaI GCGC 1 cut(s) 1069
GluI GCNGC 9 cut(s) 171, 465, 1080, 1350, 1359, 1374, 1397, 1452, 1502
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 3 cut(s) 1050, 1120, 1424
HapII CCGG 3 cut(s) 71, 155, 1425
HgaI GACGC 2 cut(s) 647, 822
HhaI GCGC 1 cut(s) 1070
Hin1II CATG 7 cut(s) 1060, 1065, 1125, 1231, 1241, 1256, 1395
Hin6I GCGC 1 cut(s) 1068
HinP1I GCGC 1 cut(s) 1068
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 5 cut(s) 144, 309, 718, 812, 944
HpaI GTTAAC 1 cut(s) 345
HpaII CCGG 3 cut(s) 71, 155, 1425
HphI GGTGA 2 cut(s) 681, 1423
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 6 cut(s) 143, 489, 510, 894, 1491, 1509
Hpy188III TCNNGA 7 cut(s) 52, 155, 230, 604, 622, 784, 1100
Hpy8I GTNNAC 1 cut(s) 345
HpyAV CCTTC 6 cut(s) 619, 706, 774, 947, 978, 1381
HpyCH4III ACNGT 5 cut(s) 749, 758, 1180, 1324, 1420
HpyCH4IV ACGT 2 cut(s) 1302, 1314
HpyF10VI GCNNNNNNNGC 7 cut(s) 170, 446, 1076, 1085, 1274, 1355, 1358
HpyF3I CTNAG 5 cut(s) 486, 771, 843, 1052, 1508
HpySE526I ACGT 2 cut(s) 1302, 1314
Hsp92II CATG 7 cut(s) 1060, 1065, 1125, 1231, 1241, 1256, 1395
HspAI GCGC 1 cut(s) 1068
Kpn2I TCCGGA 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 1249
KspAI GTTAAC 1 cut(s) 345
Kzo9I GATC 6 cut(s) 157, 178, 780, 905, 1249, 1445
LmnI GCTCC 2 cut(s) 287, 1231
Lsp1109I GCAGC 9 cut(s) 157, 476, 1066, 1361, 1370, 1383, 1385, 1463, 1513
LweI GCATC 2 cut(s) 1102, 1361
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 6 cut(s) 26, 725, 903, 1091, 1127, 1403
MaeII ACGT 2 cut(s) 1302, 1314
MaeIII GTNAC 4 cut(s) 264, 512, 1015, 1279
MalI GATC 6 cut(s) 159, 180, 782, 907, 1251, 1447
MboI GATC 6 cut(s) 157, 178, 780, 905, 1249, 1445
MboII GAAGA 3 cut(s) 647, 1150, 1396
MfeI CAATTG 3 cut(s) 33, 90, 174
MhlI GDGCHC 3 cut(s) 340, 1236, 1418
MlyI GAGTC 5 cut(s) 153, 318, 727, 821, 953
MroI TCCGGA 1 cut(s) 154
MseI TTAA 2 cut(s) 344, 1151
MslI CAYNNNNRTG 1 cut(s) 1025
MspA1I CMGCKG 2 cut(s) 770, 1376
MspI CCGG 3 cut(s) 71, 155, 1425
MspR9I CCNGG 2 cut(s) 494, 1426
MunI CAATTG 3 cut(s) 33, 90, 174
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 1 cut(s) 494
MvnI CGCG 1 cut(s) 1070
MwoI GCNNNNNNNGC 7 cut(s) 170, 446, 1076, 1085, 1274, 1355, 1358
NciI CCSGG 1 cut(s) 1426
NdeII GATC 6 cut(s) 157, 178, 780, 905, 1249, 1445
NlaIII CATG 7 cut(s) 1060, 1065, 1125, 1231, 1241, 1256, 1395
NlaIV GGNNCC 4 cut(s) 755, 882, 1233, 1430
NmeAIII GCCGAG 1 cut(s) 1096
NspI RCATGY 1 cut(s) 1060
PctI GAATGC 1 cut(s) 583
PflMI CCANNNNNTGG 2 cut(s) 191, 978
PkrI GCNGC 9 cut(s) 172, 466, 1081, 1351, 1360, 1375, 1398, 1453, 1503
PleI GAGTC 5 cut(s) 152, 317, 726, 820, 952
PpsI GAGTC 5 cut(s) 152, 317, 726, 820, 952
PsiI TTATAA 1 cut(s) 1175
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 4 cut(s) 755, 882, 1233, 1430
PspPI GGNCC 1 cut(s) 1048
PstI CTGCAG 2 cut(s) 106, 466
PstNI CAGNNNCTG 2 cut(s) 493, 1507
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 4 cut(s) 384, 805, 934, 1293
RsaNI GTAC 4 cut(s) 383, 804, 933, 1292
RseI CAYNNNNRTG 1 cut(s) 1025
SaqAI TTAA 2 cut(s) 344, 1151
SatI GCNGC 9 cut(s) 171, 465, 1080, 1350, 1359, 1374, 1397, 1452, 1502
Sau3AI GATC 6 cut(s) 157, 178, 780, 905, 1249, 1445
Sau96I GGNCC 1 cut(s) 1048
SchI GAGTC 5 cut(s) 153, 318, 727, 821, 953
ScrFI CCNGG 2 cut(s) 494, 1426
SduI GDGCHC 3 cut(s) 340, 1236, 1418
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 2 cut(s) 1102, 1361
SfcI CTRYAG 3 cut(s) 102, 462, 939
SmiMI CAYNNNNRTG 1 cut(s) 1025
SsiI CCGC 6 cut(s) 62, 357, 413, 1260, 1356, 1376
SspI AATATT 1 cut(s) 454
SspMI CTAG 6 cut(s) 26, 725, 903, 1091, 1127, 1403
StyD4I CCNGG 2 cut(s) 492, 1424
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 5 cut(s) 749, 758, 1180, 1324, 1420
TaiI ACGT 2 cut(s) 1305, 1317
TaqII GACCGA 1 cut(s) 389
TatI WGTACW 2 cut(s) 382, 932
Tru1I TTAA 2 cut(s) 344, 1151
Tru9I TTAA 2 cut(s) 344, 1151
TseI GCWGC 9 cut(s) 170, 464, 1079, 1349, 1358, 1373, 1396, 1451, 1501
TspDTI ATGAA 1 cut(s) 1216
TspGWI ACGGA 1 cut(s) 411
Van91I CCANNNNNTGG 2 cut(s) 191, 978
XagI CCTNNNNNAGG 1 cut(s) 1130
XapI RAATTY 4 cut(s) 543, 823, 964, 1203
XceI RCATGY 1 cut(s) 1060
XcmI CCANNNNNNNNNTGG 2 cut(s) 1027, 1215
XspI CTAG 6 cut(s) 26, 725, 903, 1091, 1127, 1403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.