MD07G1275500.v1.1

Transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
34148722 .. 34151915
3194 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1275500.v1.1.491

Sequence Viewer

Length: 1644 bp
ATGGCAATGGCTTCTCCTGTCAAAGTGGTTCTTGGCTCAATTGCTTTTGCAGTCTTTTGGGTGTTGGCTGTGTTTCCGGCTGTCCCTTTCTTGCCAATCGGTAGGACTGCAGGGTCCCTCCTCGGGGCAATGCTTATGGTTGTTTTCCGAGTCTTAACTCCTGATCAAGCATACGCTGCTATTGATCTCCCAATCATTGGTCTTCTGTTTGGGACAATGGTTGTGAGTATCTATCTCGAAAGAGCAGATATATTCAAGTATTTGGGCAAGTTGCTCATGTGGAAAACTCAAGGGGCAAGGGACTTGCTCTGTCGAATCTGTTTGATTTCTACAGTTTCGAGCGCTCTCTTCACCAATGACACCTCTTGTGTGGTTTTGACCGAGTTTGTTTTGAAAGTTGCAAGACAACATAACCTCCCACCTCATCCTTTCCTACTCGCCCTTGCCTCGAGTGCAAACATTGGGTCTGCAGCAACCCCGATCGGCAATCCTCAAAACCTTGTTATAGCTGTTCAGAGTAAGATATCTTTCGGGACATTTGTGATTGGAATTCTCCCTGCAATGCTTGTGGGAGTCTGTGTGAATGCTTTGATTCTTCTATGTATGTTCTGGAGATTGTTGTCTGTCCAGAAGGATGAGGAAGATCCAGCTCTGGGACCTGTTCCAGAGGAGGATGTAAGTTGTCATCGGTTTTCACCAGCTACATTGTCACATAGTACATCCTTAAACTCTCAAGAACTGAACTCTAGATTGGAAATCCAGACTCTACAAAGTTCTCCGAATCTTAATGTGAGCATAGGTAATGTCGAGACTCTTAGAAACCGCTTACCTTCTAGCGAGAATGAAGTGAACAAGGTTCCTAGTGGTGCAATAGAGTCTGCAAGAATTTCAAGTGCATCAAAAGAGGAGACGAATGATTTGTCTTCTCATAAAAGGGACGAAACAATCCCATCAAAAAGGTCTCCATCGAATGATAGACAAACAGATGCATTTCCTACGGAGTCGTTGGAAGGGAAGGAACATCTGACCAAAAGATGGAAAAGGATATTGTGGAAATCTGGTGTTTACCTTATTACCATAGGAATGCTGATTGCACTGCTTATGGGCCTCAATATGTCGTGGTGTGCGATTACTGCTGCACTTGCTCTGGCTGTTCTTGACTTCACGGATGCCCGTCCAAGCCTAGAAAAGATTTCCTATTCACTCCTGATTTTCTTCTGCGGAATGTTTATAACCGTCAATGGATTCAACAAGACCGGCATTCCAAGCGATCTTTGGGACTTCATGGAGCCGCATGCGCAAATTGATCATGCTAGCGGGATAGCAGTTCTTGCAGTCACCATACTTGTGCTGTCAAATTTGGCTTCAAATGTACCAACTGTTTTGTTACTTGGAGGGCGGGTGGCAGCGTCGGCGGCCCTAATCTCTGCCGCGGAGGAGAAGAAGGCGTGGCTCCTATTAGCTTGGGTGAGCACCGTGGCCGGAAACCTGTCGCTTTTGGGATCAGCAGCCAACTTGATAGTGTGCGAGCAGGCTCGCCAATCTCCACAACTTGCCTACACATTGTCCTTCTGGAGCCATCTGAAATTTGGAGTCCCCTCCACTCTTATAGTCACTGCTATTGGTTTAACACTAATTAGATGA

Protein Analysis

548

Amino Acids

59.05

Weight (kDa)

7.59

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 24 - 494 6.6e-93 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1232
AasI GACNNNNNNGTC 1 cut(s) 112
Acc16I TGCGCA 1 cut(s) 1299
AccB7I CCANNNNNTGG 2 cut(s) 197, 1035
AccII CGCG 1 cut(s) 1433
AciI CCGC 8 cut(s) 823, 1221, 1292, 1317, 1399, 1415, 1431, 1433
AclWI GGATC 2 cut(s) 638, 1510
AcoI YGGCCR 1 cut(s) 1479
AcsI RAATTY 4 cut(s) 549, 885, 1357, 1586
AfaI GTAC 2 cut(s) 718, 1374
AfeI AGCGCT 1 cut(s) 343
AfiI CCNNNNNNNGG 5 cut(s) 123, 124, 197, 653, 1035
AgsI TTSAA 5 cut(s) 256, 394, 891, 1249, 1368
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AluBI AGCT 4 cut(s) 509, 650, 701, 1463
AluI AGCT 4 cut(s) 509, 650, 701, 1463
Alw21I GWGCWC 1 cut(s) 1475
Alw26I GTCTC 3 cut(s) 803, 902, 966
AlwI GGATC 2 cut(s) 638, 1510
Ama87I CYCGRG 2 cut(s) 122, 448
Aor51HI AGCGCT 1 cut(s) 343
AoxI GGCC 3 cut(s) 1105, 1416, 1479
ApeKI GCWGC 5 cut(s) 176, 470, 1136, 1406, 1508
ApoI RAATTY 4 cut(s) 549, 885, 1357, 1586
ArsI GACNNNNNNTTYG 6 cut(s) 449, 481, 901, 905, 933, 937
AspLEI GCGC 2 cut(s) 344, 1300
AspS9I GGNCC 4 cut(s) 114, 656, 1105, 1417
AsuHPI GGTGA 4 cut(s) 343, 687, 1330, 1480
AsuNHI GCTAGC 1 cut(s) 1313
AvaI CYCGRG 2 cut(s) 122, 448
AvaII GGWCC 2 cut(s) 114, 656
BbsI GAAGAC 2 cut(s) 194, 915
Bbv12I GWGCWC 1 cut(s) 1475
BbvI GCAGC 5 cut(s) 163, 482, 1123, 1418, 1520
BccI CCATC 4 cut(s) 958, 973, 1029, 1587
BclI TGATCA 2 cut(s) 163, 1306
BcoDI GTCTC 3 cut(s) 803, 902, 966
BfaI CTAG 5 cut(s) 747, 834, 861, 1184, 1314
BfmI CTRYAG 3 cut(s) 108, 330, 468
BfoI RGCGCY 1 cut(s) 345
BisI GCNGC 8 cut(s) 177, 471, 1137, 1292, 1407, 1416, 1431, 1509
BlsI GCNGC 8 cut(s) 178, 472, 1138, 1293, 1408, 1417, 1432, 1510
Bme18I GGWCC 2 cut(s) 114, 656
BmeT110I CYCGRG 2 cut(s) 122, 448
BmgT120I GGNCC 4 cut(s) 114, 656, 1105, 1417
BmiI GGNNCC 7 cut(s) 115, 116, 657, 858, 1290, 1454, 1577
BmsI GCATC 3 cut(s) 905, 976, 1159
BmtI GCTAGC 1 cut(s) 1317
BpiI GAAGAC 2 cut(s) 194, 915
BpmI CTGGAG 2 cut(s) 631, 1594
BpuEI CTTGAG 2 cut(s) 273, 717
BsaI GGTCTC 1 cut(s) 966
BsaJI CCNNGG 3 cut(s) 121, 1431, 1476
BsaXI ACNNNNNCTCC 6 cut(s) 399, 429, 564, 594, 1386, 1416
Bsc4I CCNNNNNNNGG 5 cut(s) 123, 124, 197, 653, 1035
Bse118I RCCGGY 1 cut(s) 1256
Bse3DI GCAATG 3 cut(s) 12, 135, 567
BseDI CCNNGG 3 cut(s) 121, 1431, 1476
BseGI GGATG 5 cut(s) 424, 640, 679, 719, 1174
BseLI CCNNNNNNNGG 5 cut(s) 123, 124, 197, 653, 1035
BseMI GCAATG 3 cut(s) 12, 135, 567
BseRI GAGGAG 4 cut(s) 110, 683, 920, 1451
BseXI GCAGC 5 cut(s) 163, 482, 1123, 1418, 1520
BsgI GTGCAG 1 cut(s) 1122
Bsh1236I CGCG 1 cut(s) 1433
Bsh1285I CGRYCG 1 cut(s) 483
BshFI GGCC 3 cut(s) 1107, 1418, 1481
BsiEI CGRYCG 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 1475
BsiHKCI CYCGRG 2 cut(s) 122, 448
BsiSI CCGG 3 cut(s) 77, 1257, 1482
BslFI GGGAC 9 cut(s) 68, 100, 226, 314, 547, 669, 950, 1292, 1580
BslI CCNNNNNNNGG 5 cut(s) 123, 124, 197, 653, 1035
BsmAI GTCTC 3 cut(s) 803, 902, 966
BsmBI CGTCTC 1 cut(s) 902
BsmFI GGGAC 9 cut(s) 68, 100, 226, 314, 547, 669, 950, 1292, 1580
BsmI GAATGC 3 cut(s) 589, 1089, 1260
BsnI GGCC 3 cut(s) 1107, 1418, 1481
Bso31I GGTCTC 1 cut(s) 966
BsoBI CYCGRG 2 cut(s) 122, 448
Bsp1286I GDGCHC 1 cut(s) 1475
Bsp143I GATC 7 cut(s) 163, 184, 480, 643, 1270, 1306, 1502
BspACI CCGC 8 cut(s) 823, 1221, 1292, 1317, 1399, 1415, 1431, 1433
BspANI GGCC 3 cut(s) 1107, 1418, 1481
BspFNI CGCG 1 cut(s) 1433
BspLI GGNNCC 7 cut(s) 115, 116, 657, 858, 1290, 1454, 1577
BspMAI CTGCAG 2 cut(s) 112, 472
BspOI GCTAGC 1 cut(s) 1317
BspPI GGATC 2 cut(s) 638, 1510
BspTNI GGTCTC 1 cut(s) 966
BsrDI GCAATG 3 cut(s) 12, 135, 567
BsrFI RCCGGY 1 cut(s) 1256
BssAI RCCGGY 1 cut(s) 1256
BssECI CCNNGG 3 cut(s) 121, 1431, 1476
BssMI GATC 7 cut(s) 163, 184, 480, 643, 1270, 1306, 1502
Bst4CI ACNGT 4 cut(s) 334, 1237, 1381, 1477
Bst6I CTCTTC 1 cut(s) 353
BstAPI GCANNNNNTGC 2 cut(s) 176, 1331
BstC8I GCNNGC 5 cut(s) 1296, 1315, 1529, 1533, 1537
BstDEI CTNAG 1 cut(s) 815
BstDSI CCRYGG 2 cut(s) 1431, 1476
BstF5I GGATG 5 cut(s) 424, 640, 679, 719, 1174
BstFNI CGCG 1 cut(s) 1433
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 2 cut(s) 344, 1300
BstKTI GATC 7 cut(s) 166, 187, 483, 646, 1273, 1309, 1505
BstMAI GTCTC 3 cut(s) 803, 902, 966
BstMBI GATC 7 cut(s) 163, 184, 480, 643, 1270, 1306, 1502
BstMCI CGRYCG 1 cut(s) 483
BstMWI GCNNNNNNNGC 9 cut(s) 176, 452, 1133, 1142, 1266, 1297, 1331, 1412, 1415
BstNSI RCATGY 1 cut(s) 1298
BstSFI CTRYAG 3 cut(s) 108, 330, 468
BstUI CGCG 1 cut(s) 1433
BstV1I GCAGC 5 cut(s) 163, 482, 1123, 1418, 1520
BstV2I GAAGAC 2 cut(s) 194, 915
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 3 cut(s) 1107, 1418, 1481
BtgI CCRYGG 2 cut(s) 1431, 1476
BtsCI GGATG 5 cut(s) 424, 640, 679, 719, 1174
BtsI GCAGTG 2 cut(s) 1094, 1614
BtsIMutI CAGTG 2 cut(s) 1094, 1614
Cac8I GCNNGC 5 cut(s) 1296, 1315, 1529, 1533, 1537
CfoI GCGC 2 cut(s) 344, 1300
Cfr10I RCCGGY 1 cut(s) 1256
Cfr13I GGNCC 4 cut(s) 114, 656, 1105, 1417
Cfr42I CCGCGG 1 cut(s) 1434
CseI GACGC 1 cut(s) 1398
Csp6I GTAC 2 cut(s) 717, 1373
CspCI CAANNNNNGTGG 2 cut(s) 549, 584
CviAII CATG 4 cut(s) 277, 1285, 1295, 1310
CviQI GTAC 2 cut(s) 717, 1373
DdeI CTNAG 1 cut(s) 815
DpnI GATC 7 cut(s) 165, 186, 482, 645, 1272, 1308, 1504
DpnII GATC 7 cut(s) 163, 184, 480, 643, 1270, 1306, 1502
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 1479
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco31I GGTCTC 1 cut(s) 966
Eco32I GATATC 1 cut(s) 525
Eco47I GGWCC 2 cut(s) 114, 656
Eco47III AGCGCT 1 cut(s) 343
Eco88I CYCGRG 2 cut(s) 122, 448
EcoO109I RGGNCCY 2 cut(s) 114, 656
EcoRI GAATTC 1 cut(s) 549
EcoRV GATATC 1 cut(s) 525
EcoT22I ATGCAT 1 cut(s) 991
Esp3I CGTCTC 1 cut(s) 902
FaeI CATG 4 cut(s) 280, 1288, 1298, 1313
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 9 cut(s) 68, 100, 226, 314, 547, 669, 950, 1292, 1580
FatI CATG 4 cut(s) 276, 1284, 1294, 1309
FauI CCCGC 2 cut(s) 1310, 1392
FbaI TGATCA 2 cut(s) 163, 1306
Fnu4HI GCNGC 8 cut(s) 177, 471, 1137, 1292, 1407, 1416, 1431, 1509
FokI GGATG 5 cut(s) 411, 647, 686, 706, 1181
Fsp4HI GCNGC 8 cut(s) 177, 471, 1137, 1292, 1407, 1416, 1431, 1509
FspBI CTAG 5 cut(s) 747, 834, 861, 1184, 1314
FspI TGCGCA 1 cut(s) 1299
GlaI GCGC 2 cut(s) 343, 1299
GluI GCNGC 8 cut(s) 177, 471, 1137, 1292, 1407, 1416, 1431, 1509
GsuI CTGGAG 2 cut(s) 631, 1594
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 3 cut(s) 1107, 1418, 1481
HapII CCGG 3 cut(s) 77, 1257, 1482
HgaI GACGC 1 cut(s) 1398
HhaI GCGC 2 cut(s) 344, 1300
Hin1II CATG 4 cut(s) 280, 1288, 1298, 1313
Hin6I GCGC 2 cut(s) 342, 1298
HinP1I GCGC 2 cut(s) 342, 1298
HpaII CCGG 3 cut(s) 77, 1257, 1482
HphI GGTGA 4 cut(s) 343, 687, 1330, 1480
Hpy166II GTNNAC 2 cut(s) 850, 1066
Hpy188I TCNGA 5 cut(s) 149, 516, 780, 1026, 1584
Hpy8I GTNNAC 2 cut(s) 850, 1066
Hpy99I CGWCG 1 cut(s) 1414
HpyAV CCTTC 6 cut(s) 625, 840, 1004, 1009, 1438, 1579
HpyCH4III ACNGT 4 cut(s) 334, 1237, 1381, 1477
HpyF10VI GCNNNNNNNGC 9 cut(s) 176, 452, 1133, 1142, 1266, 1297, 1331, 1412, 1415
HpyF3I CTNAG 1 cut(s) 815
Hsp92II CATG 4 cut(s) 280, 1288, 1298, 1313
HspAI GCGC 2 cut(s) 342, 1298
KflI GGGWCCC 1 cut(s) 114
Ksp22I TGATCA 2 cut(s) 163, 1306
KspI CCGCGG 1 cut(s) 1434
Kzo9I GATC 7 cut(s) 163, 184, 480, 643, 1270, 1306, 1502
LmnI GCTCC 3 cut(s) 1288, 1458, 1575
Lsp1109I GCAGC 5 cut(s) 163, 482, 1123, 1418, 1520
LweI GCATC 3 cut(s) 905, 976, 1159
MaeI CTAG 5 cut(s) 747, 834, 861, 1184, 1314
MaeIII GTNAC 4 cut(s) 708, 1336, 1386, 1612
MalI GATC 7 cut(s) 165, 186, 482, 645, 1272, 1308, 1504
MboI GATC 7 cut(s) 163, 184, 480, 643, 1270, 1306, 1502
MboII GAAGA 7 cut(s) 194, 340, 587, 653, 915, 1207, 1453
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 1 cut(s) 1475
MluCI AATT 7 cut(s) 39, 549, 885, 1302, 1357, 1586, 1635
MlyI GAGTC 7 cut(s) 159, 582, 757, 805, 884, 1010, 1602
MmeI TCCRAC 1 cut(s) 987
Mph1103I ATGCAT 1 cut(s) 991
MseI TTAA 4 cut(s) 155, 725, 786, 1628
MslI CAYNNNNRTG 2 cut(s) 1082, 1346
MspA1I CMGCKG 1 cut(s) 1433
MspI CCGG 3 cut(s) 77, 1257, 1482
MunI CAATTG 1 cut(s) 39
Mva1269I GAATGC 3 cut(s) 589, 1089, 1260
MvnI CGCG 1 cut(s) 1433
MwoI GCNNNNNNNGC 9 cut(s) 176, 452, 1133, 1142, 1266, 1297, 1331, 1412, 1415
NdeII GATC 7 cut(s) 163, 184, 480, 643, 1270, 1306, 1502
NheI GCTAGC 1 cut(s) 1313
NlaIII CATG 4 cut(s) 280, 1288, 1298, 1313
NlaIV GGNNCC 7 cut(s) 115, 116, 657, 858, 1290, 1454, 1577
NmuCI GTSAC 3 cut(s) 708, 1336, 1612
NsbI TGCGCA 1 cut(s) 1299
NsiI ATGCAT 1 cut(s) 991
NspI RCATGY 1 cut(s) 1298
PaeI GCATGC 1 cut(s) 1298
PaeR7I CTCGAG 1 cut(s) 448
PcsI WCGNNNNNNNCGW 1 cut(s) 1124
PctI GAATGC 3 cut(s) 589, 1089, 1260
PfeI GAWTC 4 cut(s) 315, 592, 781, 1245
PflMI CCANNNNNTGG 2 cut(s) 197, 1035
PkrI GCNGC 8 cut(s) 178, 472, 1138, 1293, 1408, 1417, 1432, 1510
Ple19I CGATCG 1 cut(s) 483
PleI GAGTC 7 cut(s) 158, 581, 757, 805, 883, 1009, 1601
PpsI GAGTC 7 cut(s) 158, 581, 757, 805, 883, 1009, 1601
PpuMI RGGWCCY 2 cut(s) 114, 656
PsiI TTATAA 1 cut(s) 1232
Psp5II RGGWCCY 2 cut(s) 114, 656
PspN4I GGNNCC 7 cut(s) 115, 116, 657, 858, 1290, 1454, 1577
PspPI GGNCC 4 cut(s) 114, 656, 1105, 1417
PspPPI RGGWCCY 2 cut(s) 114, 656
PspXI VCTCGAGB 1 cut(s) 448
PstI CTGCAG 2 cut(s) 112, 472
PsuI RGATCY 1 cut(s) 643
PvuI CGATCG 1 cut(s) 483
RsaI GTAC 2 cut(s) 718, 1374
RsaNI GTAC 2 cut(s) 717, 1373
RseI CAYNNNNRTG 2 cut(s) 1082, 1346
SacII CCGCGG 1 cut(s) 1434
SaqAI TTAA 4 cut(s) 155, 725, 786, 1628
SatI GCNGC 8 cut(s) 177, 471, 1137, 1292, 1407, 1416, 1431, 1509
Sau3AI GATC 7 cut(s) 163, 184, 480, 643, 1270, 1306, 1502
Sau96I GGNCC 4 cut(s) 114, 656, 1105, 1417
SchI GAGTC 7 cut(s) 159, 582, 757, 805, 884, 1010, 1602
SduI GDGCHC 1 cut(s) 1475
SfaNI GCATC 3 cut(s) 905, 976, 1159
SfcI CTRYAG 3 cut(s) 108, 330, 468
Sfr274I CTCGAG 1 cut(s) 448
Sfr303I CCGCGG 1 cut(s) 1434
SgrBI CCGCGG 1 cut(s) 1434
SinI GGWCC 2 cut(s) 114, 656
SlaI CTCGAG 1 cut(s) 448
SmiMI CAYNNNNRTG 2 cut(s) 1082, 1346
SmlI CTYRAG 3 cut(s) 288, 448, 732
SmoI CTYRAG 3 cut(s) 288, 448, 732
SphI GCATGC 1 cut(s) 1298
Sse9I AATT 7 cut(s) 39, 549, 885, 1302, 1357, 1586, 1635
SsiI CCGC 8 cut(s) 823, 1221, 1292, 1317, 1399, 1415, 1431, 1433
SspMI CTAG 5 cut(s) 747, 834, 861, 1184, 1314
TaaI ACNGT 4 cut(s) 334, 1237, 1381, 1477
TaqI TCGA 6 cut(s) 237, 313, 338, 449, 807, 968
TaqII GACCGA 1 cut(s) 395
TasI AATT 7 cut(s) 39, 549, 885, 1302, 1357, 1586, 1635
TatI WGTACW 1 cut(s) 716
TauI GCSGC 3 cut(s) 1294, 1418, 1433
TfiI GAWTC 4 cut(s) 315, 592, 781, 1245
Tru1I TTAA 4 cut(s) 155, 725, 786, 1628
Tru9I TTAA 4 cut(s) 155, 725, 786, 1628
TscAI CASTG 2 cut(s) 1101, 1621
TseFI GTSAC 3 cut(s) 708, 1336, 1612
TseI GCWGC 5 cut(s) 176, 470, 1136, 1406, 1508
Tsp45I GTSAC 3 cut(s) 708, 1336, 1612
TspDTI ATGAA 2 cut(s) 858, 1273
TspGWI ACGGA 2 cut(s) 1013, 1181
TspRI CASTG 2 cut(s) 1101, 1621
Van91I CCANNNNNTGG 2 cut(s) 197, 1035
VpaK11BI GGWCC 2 cut(s) 114, 656
XapI RAATTY 4 cut(s) 549, 885, 1357, 1586
XbaI TCTAGA 1 cut(s) 746
XceI RCATGY 1 cut(s) 1298
XcmI CCANNNNNNNNNTGG 2 cut(s) 1272, 1586
XhoI CTCGAG 1 cut(s) 448
XspI CTAG 5 cut(s) 747, 834, 861, 1184, 1314
Zsp2I ATGCAT 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.