Rh1CG396800

Transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
66397018 .. 66401767
4750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG396800.1

Sequence Viewer

Length: 1422 bp
ATGGCATTGGCTTCTTCTGTCAAAGTGGTTCTAGGCTCAATTGCCTTTGCAACATTCTGGATATTGGCGGTGTTTCCAGCTGTCCCTTTTCTGCCTATTGGGAGGACTGCAGGGTCTCTTTTAGGGGCAATGCTGATGGTTCTGTTCCGAGTCCTAACTCCGGATCAAGCCTACGCTGCAATTGATCTCCCAATCCTTGGCCTTTTGTTTGGGACAATGGTTGTGAGTATCTATCTTGAAAGAGCAGATATGTTCAAGTATTTGGGCAAGTTGCTCTTGTGGAAAAGCAAAGGAGCAAAGGACTTGATATGTAGAGTCTGTTTGATTTCTGCCATTTCAAGTGCTCTTTTCACCAATGACACCTCTTGTGTGGTTTTGACTGAGTTTGTACTAAAAGTTGCAAGACAACACAACTTACCGCCTCATCCATTCCTGCTTGCCCTTGCCTCAAGTGCAAATATTGGGTCTGCAGCAACCCCAATCGGCAATCCTCAGAACCTGGTTATAGCTGTTCAGAGTAAAATTCCTTTTGGAAAGTTTGTTTTAGGAATTTTCCCTGCAATGCTTGTAGGAGTTTGTGTGAATGCTTTGCTTCTTTTGTGTATGTTCTGGAAGTTGTTGTCTATCCAGAAGGATGTGGAAGACGCAACTGGAGAGGTTGTCGGGGAGGAGGATATGATTTCTCACCGGTTTTCACCAGCCACACTGTCACATAGTGCATCCTTCAACTCTCAGGAGCTGAACTCCAGACTAGAAGCCAAGAGTGGGCGAGGTTCTCCAGTTGTTGAGAACCTTAGGAACCGTGTGCCTTCAGCTGAGACTGAGATCAAGAGGGTTTATAGTGCTGGTGCTTTTGAGTCTGCAAGAAATTCAAGTGCATCAAAGATTGAGGAGACAAATGATGTGGCTTCCCCGAAAAAGGAGGAAACAGTTGCTCCGAAAAGGACTCCATCAAAGGAAAGACTACAAGTATCTCTAACTACTACAGAGTCTTTGGAAGGAAAGGAAAATTTGACCACAAAATGGAGAAGGATGTTTTGGAAATCTGGCGTTTATTTTGTTACGATAGGAATGTTGGTTGCGCTTCTTATGGGCCTGAACATGTCATGGAGCGCAATTACTGCTGCACTTGCTCTAGTTGTTCTTGATTTCAAGGATGCTTGGCCAAGCCTAGAAAAGGTATCCTATTCACTTTTAATTTTCTTCTGTGGTATGTTTATAACTGTGGATGGCTTCAACAAAACCGGCATTCCAAGCACTCTTTGGGACTTCATGGAGCCCCATGCGAAAATTGATCATGTTAGCGGAATAGCAGCTCTTGCTGTTACCATACTTGTACTATCAAACGTGGCTTCAAACGTGCCAACTGGTAATGCTGATGTTCTCTCCCATCTATATATTTCTTTGTTACCAGTTTATTGA

Protein Analysis

473

Amino Acids

51.31

Weight (kDa)

8.61

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CitMHS PF03600 27 - 456 1.9e-88 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1220
AasI GACNNNNNNGTC 1 cut(s) 112
AccB7I CCANNNNNTGG 2 cut(s) 197, 1023
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 3 cut(s) 68, 419, 1305
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 1 cut(s) 1163
AcsI RAATTY 4 cut(s) 522, 549, 868, 1009
AcuI CTGAAG 1 cut(s) 795
AdeI CACNNNGTG 1 cut(s) 716
AfaI GTAC 2 cut(s) 390, 1338
AfiI CCNNNNNNNGG 6 cut(s) 160, 197, 765, 919, 1023, 1177
AflIII ACRYGT 1 cut(s) 1101
AgeI ACCGGT 1 cut(s) 687
AgsI TTSAA 8 cut(s) 239, 256, 339, 727, 873, 1153, 1237, 1356
AjnI CCWGG 1 cut(s) 498
AjuI GAANNNNNNNTTGG 2 cut(s) 1021, 1053
AluBI AGCT 5 cut(s) 80, 509, 739, 815, 1316
AluI AGCT 5 cut(s) 80, 509, 739, 815, 1316
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 3 cut(s) 120, 812, 887
AlwI GGATC 1 cut(s) 171
AlwNI CAGNNNCTG 2 cut(s) 499, 739
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 3 cut(s) 199, 1093, 1163
ApeKI GCWGC 4 cut(s) 176, 470, 1124, 1313
ApoI RAATTY 4 cut(s) 522, 549, 868, 1009
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
AsiGI ACCGGT 1 cut(s) 687
AspLEI GCGC 2 cut(s) 1084, 1115
AspS9I GGNCC 1 cut(s) 1093
AsuHPI GGTGA 3 cut(s) 343, 677, 687
AxyI CCTNAGG 1 cut(s) 794
BalI TGGCCA 1 cut(s) 1165
BanII GRGCYC 1 cut(s) 1281
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 4 cut(s) 163, 482, 1111, 1325
BccI CCATC 4 cut(s) 130, 958, 1223, 1398
BciT130I CCWGG 1 cut(s) 500
BciVI GTATCC 1 cut(s) 1192
BclI TGATCA 1 cut(s) 1294
BcoDI GTCTC 3 cut(s) 120, 812, 887
BfaI CTAG 4 cut(s) 32, 752, 1136, 1172
BfmI CTRYAG 3 cut(s) 108, 468, 984
BfuI GTATCC 1 cut(s) 1192
BisI GCNGC 4 cut(s) 177, 471, 1125, 1314
BlsI GCNGC 4 cut(s) 178, 472, 1126, 1315
Bme1390I CCNGG 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 1093
BmiI GGNNCC 2 cut(s) 800, 1278
BmrFI CCNGG 1 cut(s) 500
BmsI GCATC 3 cut(s) 728, 887, 1147
BpiI GAAGAC 1 cut(s) 648
BplI GAGNNNNNCTC 2 cut(s) 728, 760
BpmI CTGGAG 3 cut(s) 672, 730, 762
BpuEI CTTGAG 1 cut(s) 433
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 2 cut(s) 160, 687
BsaXI ACNNNNNCTCC 6 cut(s) 564, 594, 645, 675, 919, 949
Bsc4I CCNNNNNNNGG 6 cut(s) 160, 197, 765, 919, 1023, 1177
Bse118I RCCGGY 2 cut(s) 687, 1244
Bse1I ACTGG 4 cut(s) 655, 779, 1372, 1412
Bse21I CCTNAGG 1 cut(s) 794
Bse3DI GCAATG 2 cut(s) 135, 567
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 6 cut(s) 424, 640, 719, 1038, 1162, 1234
BseLI CCNNNNNNNGG 6 cut(s) 160, 197, 765, 919, 1023, 1177
BseMI GCAATG 2 cut(s) 135, 567
BseMII CTCAG 5 cut(s) 372, 506, 746, 807, 813
BseNI ACTGG 4 cut(s) 655, 779, 1372, 1412
BseRI GAGGAG 2 cut(s) 683, 905
BseXI GCAGC 4 cut(s) 163, 482, 1111, 1325
BsgI GTGCAG 1 cut(s) 1110
BshFI GGCC 3 cut(s) 201, 1095, 1165
BshTI ACCGGT 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 346
BsiSI CCGG 3 cut(s) 161, 688, 1245
BslFI GGGAC 3 cut(s) 68, 226, 1280
BslI CCNNNNNNNGG 6 cut(s) 160, 197, 765, 919, 1023, 1177
BsmAI GTCTC 3 cut(s) 120, 812, 887
BsmFI GGGAC 3 cut(s) 68, 226, 1280
BsmI GAATGC 2 cut(s) 589, 1248
BsnI GGCC 3 cut(s) 201, 1095, 1165
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 346, 1281
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 4 cut(s) 163, 184, 825, 1294
BspACI CCGC 3 cut(s) 68, 419, 1305
BspANI GGCC 3 cut(s) 201, 1095, 1165
BspCNI CTCAG 5 cut(s) 373, 505, 745, 808, 814
BspEI TCCGGA 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 800, 1278
BspMAI CTGCAG 2 cut(s) 112, 472
BspPI GGATC 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 120
BsrDI GCAATG 2 cut(s) 135, 567
BsrFI RCCGGY 2 cut(s) 687, 1244
BsrI ACTGG 4 cut(s) 655, 779, 1372, 1412
BssAI RCCGGY 2 cut(s) 687, 1244
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 4 cut(s) 163, 184, 825, 1294
BssT1I CCWWGG 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 500
Bst4CI ACNGT 4 cut(s) 708, 803, 931, 1225
BstAPI GCANNNNNTGC 2 cut(s) 1121, 1319
BstC8I GCNNGC 1 cut(s) 438
BstDEI CTNAG 6 cut(s) 381, 492, 732, 794, 816, 822
BstENI CCTNNNNNAGG 1 cut(s) 1175
BstF5I GGATG 6 cut(s) 424, 640, 719, 1038, 1162, 1234
BstHHI GCGC 2 cut(s) 1084, 1115
BstKTI GATC 4 cut(s) 166, 187, 828, 1297
BstMAI GTCTC 3 cut(s) 120, 812, 887
BstMBI GATC 4 cut(s) 163, 184, 825, 1294
BstMWI GCNNNNNNNGC 6 cut(s) 176, 452, 1121, 1130, 1254, 1319
BstNI CCWGG 1 cut(s) 500
BstNSI RCATGY 1 cut(s) 1105
BstSCI CCNGG 1 cut(s) 498
BstSFI CTRYAG 3 cut(s) 108, 468, 984
BstV1I GCAGC 4 cut(s) 163, 482, 1111, 1325
BstV2I GAAGAC 1 cut(s) 648
Bsu36I CCTNAGG 1 cut(s) 794
BsuI GTATCC 1 cut(s) 1192
BsuRI GGCC 3 cut(s) 201, 1095, 1165
BtsCI GGATG 6 cut(s) 424, 640, 719, 1038, 1162, 1234
BtsIMutI CAGTG 1 cut(s) 704
Cac8I GCNNGC 1 cut(s) 438
CaiI CAGNNNCTG 2 cut(s) 499, 739
CfoI GCGC 2 cut(s) 1084, 1115
Cfr10I RCCGGY 2 cut(s) 687, 1244
Cfr13I GGNCC 1 cut(s) 1093
CseI GACGC 1 cut(s) 653
CsiI ACCWGGT 1 cut(s) 498
Csp6I GTAC 2 cut(s) 389, 1337
CspAI ACCGGT 1 cut(s) 687
CspCI CAANNNNNGTGG 2 cut(s) 885, 920
CviAII CATG 5 cut(s) 1102, 1107, 1273, 1283, 1298
CviQI GTAC 2 cut(s) 389, 1337
DdeI CTNAG 6 cut(s) 381, 492, 732, 794, 816, 822
DpnI GATC 4 cut(s) 165, 186, 827, 1296
DpnII GATC 4 cut(s) 163, 184, 825, 1294
DraIII CACNNNGTG 1 cut(s) 716
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 1163
Eco130I CCWWGG 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 1281
Eco31I GGTCTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 795
Eco81I CCTNAGG 1 cut(s) 794
EcoNI CCTNNNNNAGG 1 cut(s) 1175
EcoRII CCWGG 1 cut(s) 498
EcoT14I CCWWGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 1281
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 5 cut(s) 1105, 1110, 1276, 1286, 1301
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FaqI GGGAC 3 cut(s) 68, 226, 1280
FatI CATG 5 cut(s) 1101, 1106, 1272, 1282, 1297
FbaI TGATCA 1 cut(s) 1294
Fnu4HI GCNGC 4 cut(s) 177, 471, 1125, 1314
FokI GGATG 6 cut(s) 411, 647, 706, 1045, 1169, 1241
FriOI GRGCYC 1 cut(s) 1281
Fsp4HI GCNGC 4 cut(s) 177, 471, 1125, 1314
FspBI CTAG 4 cut(s) 32, 752, 1136, 1172
GlaI GCGC 2 cut(s) 1083, 1114
GluI GCNGC 4 cut(s) 177, 471, 1125, 1314
GsuI CTGGAG 3 cut(s) 672, 730, 762
HaeIII GGCC 3 cut(s) 201, 1095, 1165
HapII CCGG 3 cut(s) 161, 688, 1245
HgaI GACGC 1 cut(s) 653
HhaI GCGC 2 cut(s) 1084, 1115
Hin1II CATG 5 cut(s) 1105, 1110, 1276, 1286, 1301
Hin6I GCGC 2 cut(s) 1082, 1113
HinP1I GCGC 2 cut(s) 1082, 1113
HinfI GANTC 5 cut(s) 150, 315, 857, 946, 989
HpaII CCGG 3 cut(s) 161, 688, 1245
HphI GGTGA 3 cut(s) 343, 677, 687
Hpy188I TCNGA 4 cut(s) 149, 495, 516, 939
Hpy188III TCNNGA 9 cut(s) 58, 161, 236, 610, 628, 734, 747, 829, 1145
HpyAV CCTTC 5 cut(s) 625, 733, 819, 992, 1023
HpyCH4III ACNGT 4 cut(s) 708, 803, 931, 1225
HpyCH4IV ACGT 2 cut(s) 1347, 1359
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 452, 1121, 1130, 1254, 1319
HpyF3I CTNAG 6 cut(s) 381, 492, 732, 794, 816, 822
HpySE526I ACGT 2 cut(s) 1347, 1359
Hsp92II CATG 5 cut(s) 1105, 1110, 1276, 1286, 1301
HspAI GCGC 2 cut(s) 1082, 1113
Kpn2I TCCGGA 1 cut(s) 160
Ksp22I TGATCA 1 cut(s) 1294
Kzo9I GATC 4 cut(s) 163, 184, 825, 1294
LmnI GCTCC 5 cut(s) 293, 736, 940, 1110, 1276
Lsp1109I GCAGC 4 cut(s) 163, 482, 1111, 1325
LweI GCATC 3 cut(s) 728, 887, 1147
MabI ACCWGGT 1 cut(s) 498
MaeI CTAG 4 cut(s) 32, 752, 1136, 1172
MaeII ACGT 2 cut(s) 1347, 1359
MaeIII GTNAC 4 cut(s) 708, 1060, 1324, 1407
MalI GATC 4 cut(s) 165, 186, 827, 1296
MboI GATC 4 cut(s) 163, 184, 825, 1294
MboII GAAGA 3 cut(s) 6, 653, 1195
MfeI CAATTG 2 cut(s) 39, 180
MhlI GDGCHC 2 cut(s) 346, 1281
MlsI TGGCCA 1 cut(s) 1165
MluCI AATT 9 cut(s) 39, 180, 522, 549, 868, 1009, 1116, 1197, 1290
MluNI TGGCCA 1 cut(s) 1165
MlyI GAGTC 5 cut(s) 159, 324, 866, 940, 998
Mox20I TGGCCA 1 cut(s) 1165
MroI TCCGGA 1 cut(s) 160
MscI TGGCCA 1 cut(s) 1165
MseI TTAA 1 cut(s) 1196
Msp20I TGGCCA 1 cut(s) 1165
MspA1I CMGCKG 2 cut(s) 80, 815
MspI CCGG 3 cut(s) 161, 688, 1245
MspR9I CCNGG 1 cut(s) 500
MunI CAATTG 2 cut(s) 39, 180
Mva1269I GAATGC 2 cut(s) 589, 1248
MvaI CCWGG 1 cut(s) 500
MwoI GCNNNNNNNGC 6 cut(s) 176, 452, 1121, 1130, 1254, 1319
NdeII GATC 4 cut(s) 163, 184, 825, 1294
NlaIII CATG 5 cut(s) 1105, 1110, 1276, 1286, 1301
NlaIV GGNNCC 2 cut(s) 800, 1278
NmuCI GTSAC 1 cut(s) 708
NspI RCATGY 1 cut(s) 1105
PciI ACATGT 1 cut(s) 1101
PctI GAATGC 2 cut(s) 589, 1248
PflMI CCANNNNNTGG 2 cut(s) 197, 1023
PinAI ACCGGT 1 cut(s) 687
PkrI GCNGC 4 cut(s) 178, 472, 1126, 1315
PleI GAGTC 5 cut(s) 158, 323, 865, 940, 997
PpsI GAGTC 5 cut(s) 158, 323, 865, 940, 997
PscI ACATGT 1 cut(s) 1101
PsiI TTATAA 1 cut(s) 1220
Psp6I CCWGG 1 cut(s) 498
PspGI CCWGG 1 cut(s) 498
PspN4I GGNNCC 2 cut(s) 800, 1278
PspPI GGNCC 1 cut(s) 1093
PstI CTGCAG 2 cut(s) 112, 472
PstNI CAGNNNCTG 2 cut(s) 499, 739
PvuII CAGCTG 2 cut(s) 80, 815
RsaI GTAC 2 cut(s) 390, 1338
RsaNI GTAC 2 cut(s) 389, 1337
SaqAI TTAA 1 cut(s) 1196
SatI GCNGC 4 cut(s) 177, 471, 1125, 1314
Sau3AI GATC 4 cut(s) 163, 184, 825, 1294
Sau96I GGNCC 1 cut(s) 1093
SchI GAGTC 5 cut(s) 159, 324, 866, 940, 998
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 2 cut(s) 346, 1281
SexAI ACCWGGT 1 cut(s) 498
SfaNI GCATC 3 cut(s) 728, 887, 1147
SfcI CTRYAG 3 cut(s) 108, 468, 984
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 9 cut(s) 39, 180, 522, 549, 868, 1009, 1116, 1197, 1290
SsiI CCGC 3 cut(s) 68, 419, 1305
SspI AATATT 1 cut(s) 460
SspMI CTAG 4 cut(s) 32, 752, 1136, 1172
StyD4I CCNGG 1 cut(s) 498
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 4 cut(s) 708, 803, 931, 1225
TaiI ACGT 2 cut(s) 1350, 1362
TasI AATT 9 cut(s) 39, 180, 522, 549, 868, 1009, 1116, 1197, 1290
TatI WGTACW 2 cut(s) 388, 1336
Tru1I TTAA 1 cut(s) 1196
Tru9I TTAA 1 cut(s) 1196
TscAI CASTG 1 cut(s) 711
TseFI GTSAC 1 cut(s) 708
TseI GCWGC 4 cut(s) 176, 470, 1124, 1313
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 1 cut(s) 1261
TspRI CASTG 1 cut(s) 711
Van91I CCANNNNNTGG 2 cut(s) 197, 1023
XagI CCTNNNNNAGG 1 cut(s) 1175
XapI RAATTY 4 cut(s) 522, 549, 868, 1009
XceI RCATGY 1 cut(s) 1105
XcmI CCANNNNNNNNNTGG 1 cut(s) 1260
XspI CTAG 4 cut(s) 32, 752, 1136, 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.