Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Reverse (-)

553019 .. 556152

Gene Structure 3134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G02610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGAGATGTAGTTTTGTTCATAGATGAAACATATTTGAAATCGAGTTTTAATCGCTGTAGAATCTGTCACGAAGAAGAAGCTGAGAGCTACTTTGAAGCTCCTTGTTCTTGTTCAGGAACCATCAAGTTCGCTCACAGAGATTGCATACAACGATGGTGTGATGAGAAAGGAAACACAATTTGTGAAATTTGTCTCCAGGAGTATAAACCTGGATACACCACAACTTCAAAACCATCTCGATTTATTGAAACAGCAGTCACAATCAGAGATAATTTACACATAATGAGAAGAGAAAATGGAAGAAGAAGAAGAAATAGAAGATTAGTGAATAGAGAAGAATCAGATTTTCAAGAATGCAACTCTGGTGTTGATAGAGGCGCCTCTTGTTGTAGATACTTGGCTCTCATTTTTTCGGTTATTTTGTTGATAAAGCATGCATTTGATGCGGTTTATGGAACTGAAGAGTATCCCTATACAATATTCACGGTCTTAACATTGAAGGCTATAGGCATACTATTACCAATGCTCGTTATCATTCGAACCATCACAGCTATTCAAAGGAGTCTCCGATATCAAATTCTCGAATCAGAAGAAGATACATTGAGCTCTGAAGAAGAAGATCATGGTTTGGAGGAGGAAGAGCAACAACAACATATAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

221

Amino Acids

25.67

Weight (kDa)

5.27

Isoelectric Point (pI)

67.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	20 - 65	3.9e-15	RING-variant domain
DUF3675	PF12428	71 - 183	4.4e-30	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AciI	CCGC	1 cut(s)	449
AcsI	RAATTY	2 cut(s)	189, 579
AcuI	CTGAAG	2 cut(s)	483, 633
AcyI	GRCGYC	1 cut(s)	381
AgsI	TTSAA	7 cut(s)	40, 98, 231, 251, 353, 502, 560
AjnI	CCWGG	2 cut(s)	198, 211
AluBI	AGCT	6 cut(s)	83, 90, 101, 554, 609, 662
AluI	AGCT	6 cut(s)	83, 90, 101, 554, 609, 662
Alw21I	GWGCWC	1 cut(s)	611
Alw26I	GTCTC	2 cut(s)	200, 572
ApoI	RAATTY	2 cut(s)	189, 579
AspLEI	GCGC	1 cut(s)	383
AsuII	TTCGAA	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	611
BccI	CCATC	4 cut(s)	131, 150, 244, 554
BciT130I	CCWGG	2 cut(s)	200, 213
BciVI	GTATCC	2 cut(s)	209, 480
BcoDI	GTCTC	2 cut(s)	200, 572
BfmI	CTRYAG	2 cut(s)	58, 507
BfoI	RGCGCY	1 cut(s)	384
BfuI	GTATCC	2 cut(s)	209, 480
Bme1390I	CCNGG	2 cut(s)	200, 213
BmiI	GGNNCC	2 cut(s)	121, 382
BmrFI	CCNGG	2 cut(s)	200, 213
BmsI	GCATC	1 cut(s)	436
BpmI	CTGGAG	1 cut(s)	182
Bpu14I	TTCGAA	1 cut(s)	541
BsaHI	GRCGYC	1 cut(s)	381
BsaXI	ACNNNNNCTCC	1 cut(s)	27
BseBI	CCWGG	2 cut(s)	200, 213
BseMII	CTCAG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	650
BshNI	GGYRCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	611
BsmAI	GTCTC	2 cut(s)	200, 572
BsmI	GAATGC	1 cut(s)	362
Bsp119I	TTCGAA	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp143I	GATC	1 cut(s)	622
BspACI	CCGC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	121, 382
BspQI	GCTCTTC	1 cut(s)	636
BspT104I	TTCGAA	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	380
BssMI	GATC	1 cut(s)	622
BssNI	GRCGYC	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	200, 213
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	3 cut(s)	286, 459, 636
BstACI	GRCGYC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	2 cut(s)	200, 572
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	2 cut(s)	200, 213
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	198, 211
BstSFI	CTRYAG	2 cut(s)	58, 507
BsuI	GTATCC	2 cut(s)	209, 480
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	383
CviAII	CATG	2 cut(s)	437, 626
CviJI	RGCY	8 cut(s)	83, 90, 101, 404, 506, 554, 609, 662
CviKI_1	RGCY	8 cut(s)	83, 90, 101, 404, 506, 554, 609, 662
DdeI	CTNAG	1 cut(s)	84
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
Eam1104I	CTCTTC	3 cut(s)	286, 459, 636
EarI	CTCTTC	3 cut(s)	286, 459, 636
Ecl136II	GAGCTC	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	611
Eco32I	GATATC	1 cut(s)	575
Eco53kI	GAGCTC	1 cut(s)	609
Eco57I	CTGAAG	2 cut(s)	483, 633
EcoICRI	GAGCTC	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	198, 211
EcoRV	GATATC	1 cut(s)	575
EcoT22I	ATGCAT	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	611
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
FaeI	CATG	2 cut(s)	440, 629
FatI	CATG	2 cut(s)	436, 625
FriOI	GRGCYC	1 cut(s)	611
GlaI	GCGC	1 cut(s)	382
GsuI	CTGGAG	1 cut(s)	182
HaeII	RGCGCY	1 cut(s)	384
HhaI	GCGC	1 cut(s)	383
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	2 cut(s)	440, 629
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HinfI	GANTC	4 cut(s)	63, 341, 565, 587
Hpy188I	TCNGA	5 cut(s)	269, 346, 572, 592, 613
Hpy188III	TCNNGA	5 cut(s)	71, 117, 240, 353, 584
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4V	TGCA	3 cut(s)	147, 360, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	2 cut(s)	440, 629
HspAI	GCGC	1 cut(s)	381
KasI	GGCGCC	1 cut(s)	380
Kzo9I	GATC	1 cut(s)	622
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	6 cut(s)	102, 185, 198, 212, 225, 351
LweI	GCATC	1 cut(s)	436
MaeIII	GTNAC	2 cut(s)	68, 259
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	611
MluCI	AATT	4 cut(s)	180, 189, 274, 579
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	574
MnlI	CCTC	4 cut(s)	371, 394, 628, 631
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	2 cut(s)	51, 494
MspR9I	CCNGG	2 cut(s)	200, 213
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	2 cut(s)	200, 213
MwoI	GCNNNNNNNGC	1 cut(s)	446
NarI	GGCGCC	1 cut(s)	381
NdeII	GATC	1 cut(s)	622
NlaIII	CATG	2 cut(s)	440, 629
NlaIV	GGNNCC	2 cut(s)	121, 382
NmuCI	GTSAC	2 cut(s)	68, 259
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	440
NspV	TTCGAA	1 cut(s)	541
PaeI	GCATGC	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	636
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	3 cut(s)	63, 341, 587
PfoI	TCCNGGA	1 cut(s)	198
PleI	GAGTC	1 cut(s)	573
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	611
Psp6I	CCWGG	2 cut(s)	198, 211
PspGI	CCWGG	2 cut(s)	198, 211
PspN4I	GGNNCC	2 cut(s)	121, 382
SacI	GAGCTC	1 cut(s)	611
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	51, 494
Sau3AI	GATC	1 cut(s)	622
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	2 cut(s)	200, 213
SduI	GDGCHC	1 cut(s)	611
SetI	ASST	7 cut(s)	85, 92, 103, 214, 556, 611, 664
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	2 cut(s)	58, 507
SfoI	GGCGCC	1 cut(s)	382
SfuI	TTCGAA	1 cut(s)	541
SphI	GCATGC	1 cut(s)	440
Sse9I	AATT	4 cut(s)	180, 189, 274, 579
SsiI	CCGC	1 cut(s)	449
SspDI	GGCGCC	1 cut(s)	380
SspI	AATATT	1 cut(s)	483
SstI	GAGCTC	1 cut(s)	611
StyD4I	CCNGG	2 cut(s)	198, 211
TaaI	ACNGT	1 cut(s)	490
TaqI	TCGA	4 cut(s)	44, 241, 541, 585
TasI	AATT	4 cut(s)	180, 189, 274, 579
TfiI	GAWTC	3 cut(s)	63, 341, 587
Tru1I	TTAA	2 cut(s)	51, 494
Tru9I	TTAA	2 cut(s)	51, 494
TseFI	GTSAC	2 cut(s)	68, 259
Tsp45I	GTSAC	2 cut(s)	68, 259
TspDTI	ATGAA	2 cut(s)	10, 42
XapI	RAATTY	2 cut(s)	189, 579
XceI	RCATGY	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.