Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026340.1

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Reverse (-)

7524 .. 9707

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026340.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgggagatgtcatcatatacgttgaggatgagcacgatttcaaatcatgttcatcatcagtttcagtctgcaggatttgccatgaagaagaatccaacaacttggaatctccttgtgcttgctccggaactgttaagtttgcgcacagagattgcatacagaggtggtgcaatgagaaaggaaacacaacctgcgaaatttgtctccagaagtatgaacctggatacacagcacctcctccaaagaagtctcagctggatgaatcagcagtaaccatcagagatagcgtgcgggttcctagaagaagagaggaagatgaggaatcagcaagccccagattagagagggtatgctcctctacagctgatcgaagtgccaatttttgtcgatcactcgctctcctttttacggtggttttgcttgtgaggcacctctttgtggtgcttactggtagtgacgaagaataccccttcgcccttcttactgtacttattctgagggctagcggaattatcctacctatgtatatattataccgaacaatcacagcaattcagaacagcatccatcaacaatatcaatatcattaccaggaggactccgatgatgatgatgatgatgagacctcaaacctcggagaagatgaccaccaccaaggagatgccgatcatcatcaacaaagtgcagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

230

Amino Acids

26.09

Weight (kDa)

4.78

Isoelectric Point (pI)

60.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	144
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	429
AccIII	TCCGGA	1 cut(s)	125
AciI	CCGC	2 cut(s)	292, 507
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	2 cut(s)	409, 439
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	220, 591
AluBI	AGCT	2 cut(s)	256, 365
AluI	AGCT	2 cut(s)	256, 365
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	3 cut(s)	209, 255, 617
Aor13HI	TCCGGA	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	145
AsuNHI	GCTAGC	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	36
BccI	CCATC	2 cut(s)	284, 576
BciT130I	CCWGG	2 cut(s)	222, 593
BciVI	GTATCC	1 cut(s)	218
BcoDI	GTCTC	3 cut(s)	209, 255, 617
BfaI	CTAG	2 cut(s)	300, 504
BfmI	CTRYAG	2 cut(s)	70, 360
BfuAI	ACCTGC	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	222, 593
BmiI	GGNNCC	2 cut(s)	297, 431
BmrFI	CCNGG	2 cut(s)	222, 593
BmsI	GCATC	2 cut(s)	573, 652
BmtI	GCTAGC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	191
BsaBI	GATNNNNATC	2 cut(s)	666, 672
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	2 cut(s)	634, 655
BsaWI	WCCGGW	1 cut(s)	125
BsaXI	ACNNNNNCTCC	4 cut(s)	220, 250, 384, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 439
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	178
Bse8I	GATNNNNATC	2 cut(s)	666, 672
BseAI	TCCGGA	1 cut(s)	125
BseBI	CCWGG	2 cut(s)	222, 593
BseDI	CCNNGG	2 cut(s)	634, 655
BseGI	GGATG	3 cut(s)	34, 265, 564
BseJI	GATNNNNATC	2 cut(s)	666, 672
BseLI	CCNNNNNNNGG	2 cut(s)	409, 439
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	266, 488
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	2 cut(s)	228, 346
BshNI	GGYRCC	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	409, 439
BsmAI	GTCTC	3 cut(s)	209, 255, 617
Bso31I	GGTCTC	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	125
Bsp143I	GATC	3 cut(s)	367, 389, 667
BspACI	CCGC	2 cut(s)	292, 507
BspCNI	CTCAG	2 cut(s)	265, 489
BspEI	TCCGGA	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	297, 431
BspMAI	CTGCAG	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	200
BspOI	GCTAGC	1 cut(s)	507
BspT107I	GGYRCC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	634, 655
BssMI	GATC	3 cut(s)	367, 389, 667
BssT1I	CCWWGG	1 cut(s)	655
Bst2UI	CCWGG	2 cut(s)	222, 593
Bst4CI	ACNGT	3 cut(s)	133, 412, 487
Bst6I	CTCTTC	1 cut(s)	301
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstC8I	GCNNGC	4 cut(s)	121, 290, 331, 505
BstDEI	CTNAG	2 cut(s)	252, 497
BstF5I	GGATG	3 cut(s)	34, 265, 564
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	3 cut(s)	370, 392, 670
BstMAI	GTCTC	3 cut(s)	209, 255, 617
BstMBI	GATC	3 cut(s)	367, 389, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 427
BstNI	CCWGG	2 cut(s)	222, 593
BstSCI	CCNGG	2 cut(s)	220, 591
BstSFI	CTRYAG	2 cut(s)	70, 360
BstXI	CCANNNNNNTGG	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	218
BtsCI	GGATG	3 cut(s)	34, 265, 564
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	4 cut(s)	121, 290, 331, 505
CfoI	GCGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	488
CviAII	CATG	2 cut(s)	48, 83
CviJI	RGCY	4 cut(s)	256, 333, 365, 503
CviKI_1	RGCY	4 cut(s)	256, 333, 365, 503
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	2 cut(s)	252, 497
DpnI	GATC	3 cut(s)	369, 391, 669
DpnII	GATC	3 cut(s)	367, 389, 667
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	655
Eco31I	GGTCTC	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	220, 591
EcoT14I	CCWWGG	1 cut(s)	655
ErhI	CCWWGG	1 cut(s)	655
FaeI	CATG	2 cut(s)	51, 86
FatI	CATG	2 cut(s)	47, 82
FauI	CCCGC	1 cut(s)	285
FokI	GGATG	3 cut(s)	41, 272, 551
FspBI	CTAG	2 cut(s)	300, 504
FspI	TGCGCA	1 cut(s)	144
GlaI	GCGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	191
HapII	CCGG	1 cut(s)	126
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	2 cut(s)	51, 86
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	5 cut(s)	92, 107, 263, 323, 599
HpaII	CCGG	1 cut(s)	126
Hpy188I	TCNGA	5 cut(s)	281, 498, 558, 604, 638
Hpy188III	TCNNGA	2 cut(s)	126, 208
HpyAV	CCTTC	2 cut(s)	481, 488
HpyCH4III	ACNGT	3 cut(s)	133, 412, 487
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	72, 156, 171, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 427
HpyF3I	CTNAG	2 cut(s)	252, 497
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	51, 86
HspAI	GCGC	1 cut(s)	143
Kpn2I	TCCGGA	1 cut(s)	125
Kzo9I	GATC	3 cut(s)	367, 389, 667
LmnI	GCTCC	2 cut(s)	128, 359
LweI	GCATC	2 cut(s)	573, 652
MaeI	CTAG	2 cut(s)	300, 504
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	271, 455
MalI	GATC	3 cut(s)	369, 391, 669
MboI	GATC	3 cut(s)	367, 389, 667
MboII	GAAGA	7 cut(s)	98, 101, 315, 318, 326, 473, 653
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	4 cut(s)	198, 379, 510, 552
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	120
MroI	TCCGGA	1 cut(s)	125
MseI	TTAA	2 cut(s)	135, 691
MspA1I	CMGCKG	2 cut(s)	256, 365
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	222, 593
MvaI	CCWGG	2 cut(s)	222, 593
MwoI	GCNNNNNNNGC	2 cut(s)	78, 427
NdeII	GATC	3 cut(s)	367, 389, 667
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	2 cut(s)	51, 86
NlaIV	GGNNCC	2 cut(s)	297, 431
NmuCI	GTSAC	1 cut(s)	455
NsbI	TGCGCA	1 cut(s)	144
PfeI	GAWTC	4 cut(s)	92, 107, 263, 323
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
Psp6I	CCWGG	2 cut(s)	220, 591
PspGI	CCWGG	2 cut(s)	220, 591
PspN4I	GGNNCC	2 cut(s)	297, 431
PstI	CTGCAG	1 cut(s)	74
PvuII	CAGCTG	2 cut(s)	256, 365
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	135, 691
Sau3AI	GATC	3 cut(s)	367, 389, 667
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	2 cut(s)	222, 593
SduI	GDGCHC	1 cut(s)	36
SfaNI	GCATC	2 cut(s)	573, 652
SfcI	CTRYAG	2 cut(s)	70, 360
Sse9I	AATT	4 cut(s)	198, 379, 510, 552
SsiI	CCGC	2 cut(s)	292, 507
SspMI	CTAG	2 cut(s)	300, 504
StyD4I	CCNGG	2 cut(s)	220, 591
StyI	CCWWGG	1 cut(s)	655
TaaI	ACNGT	3 cut(s)	133, 412, 487
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	370, 388
TasI	AATT	4 cut(s)	198, 379, 510, 552
TatI	WGTACW	1 cut(s)	487
TfiI	GAWTC	4 cut(s)	92, 107, 263, 323
Tru1I	TTAA	2 cut(s)	135, 691
Tru9I	TTAA	2 cut(s)	135, 691
TseFI	GTSAC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	4 cut(s)	42, 99, 231, 276
XapI	RAATTY	1 cut(s)	198
XspI	CTAG	2 cut(s)	300, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.