Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005761

Physical Location & Seq

Genomic Coordinates Forward (+)

29096032 .. 29098552

Gene Structure 2521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGAGATGTCATCATATACGTTGAGGAAGAGGATTTCAAATTATGCTCCTCGTCGTTTTCAGTCTGTAGGATTTGCCATGAGGAAGATTTTGGAAGCTCCAAGAACTTGGAATCTCCTTGTGCTTGCTCTGGAACTGTCAAGTTTGCGCACAGAGATTGCATACAGAGGTGGTGCAACGAGAAAGGAAACACAACCTGCGAAATTTGTCTCCAGAAGTATGAACCCGGATACACAGCACCTCCTCCAAAGAAGTCTGAGCTGGATGAATCAGCTGTAACCATCAGAGATAGCGTGCGGGTTCCTAGAAGAAGAGAGCAAGATGAGGAATCAGGAAGCTCCCCTACTGCTGATCGAAGTGCCAATTTTTGTCGATCACTCGCTCTCCTCTTTACGGTGGTTTTGCTTGTGAGGCACCTCTTTGTGGTTCTTACCGGAAGCGACGAAGACTACCCTTTCGCCCTTGTTACTGTACTTATTCTAAGAGCTAGCGGAATTATCCTACCTATGTACATATTATACCGAACAATCACAGCGATTCAGAACAGCATCCGTCAACAGTATCAGTATCATTATCAGGAGGAGGACTCCGACGATGATGAGACGTCAAGTCTCGGAGAAGATGACCACCACCAAGAAGATGCTGATCACCATCAACAAAGTGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0031410 GO:0031982 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070647 GO:0071704 GO:0097708 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3675 RINGv

Protein Analysis

224

Amino Acids

25.3

Weight (kDa)

4.77

Isoelectric Point (pI)

65.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RINGv	PF12906	23 - 70	1.1e-14	RING-variant domain
DUF3675	PF12428	76 - 177	6.6e-25	Protein of unknown function (DUF3675)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02610 AT1G02610 AT1G02610 AT4G02075 AT4G02075 AT4G02075
fragaria_vesca	FvH4_5g39400 FvH4_5g39400
malus_domestica	MD03G1296100.v1.1 MD11G1315500.v1.1
prunus_persica	Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1 Prupe.8G271200_v2.0.a1
pyrus_communis	pycom03g23430 pycom11g27550
rosa_chinensis	RchiOBHm_Chr7g0241671
rosa_laevigata	RLG00000000555
rosa_multiflora	Rmu_sc0002268.1_g000008 Rmu_sc0026340.1_g000003
rosa_roxburghii	Rroxscaffold_3G00218830
rosa_rugosa	Rorug07G0346100 Rorug07G0346200
rosa_samantha	Rh7BG471800 Rh7CG517100 Rh7DG485600
rosa_wichuraiana	Rw7G042300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	608
Acc16I	TGCGCA	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	414
AciI	CCGC	2 cut(s)	298, 492
AcsI	RAATTY	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	605
AfaI	GTAC	2 cut(s)	474, 512
AfiI	CCNNNNNNNGG	2 cut(s)	394, 424
AgsI	TTSAA	1 cut(s)	40
AhdI	GACNNNNNGTC	1 cut(s)	609
AluBI	AGCT	5 cut(s)	99, 262, 275, 339, 488
AluI	AGCT	5 cut(s)	99, 262, 275, 339, 488
Alw26I	GTCTC	3 cut(s)	215, 596, 617
ApoI	RAATTY	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
AspLEI	GCGC	1 cut(s)	151
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	641
AsuNHI	GCTAGC	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	414
BarI	GAAGNNNNNNTAC	2 cut(s)	328, 360
BbsI	GAAGAC	1 cut(s)	453
BccI	CCATC	2 cut(s)	290, 660
BciVI	GTATCC	1 cut(s)	224
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	3 cut(s)	215, 596, 617
BfaI	CTAG	2 cut(s)	306, 489
BfmI	CTRYAG	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	224
Bme1390I	CCNGG	1 cut(s)	228
BmeRI	GACNNNNNGTC	1 cut(s)	609
BmiI	GGNNCC	2 cut(s)	303, 416
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	558, 631
BmtI	GCTAGC	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	453
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpmI	CTGGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	228
BsaBI	GATNNNNATC	2 cut(s)	645, 651
BsaHI	GRCGYC	1 cut(s)	605
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	4 cut(s)	226, 256, 369, 399
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 424
Bse8I	GATNNNNATC	2 cut(s)	645, 651
BseGI	GGATG	2 cut(s)	271, 549
BseJI	GATNNNNATC	2 cut(s)	645, 651
BseLI	CCNNNNNNNGG	2 cut(s)	394, 424
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	4 cut(s)	40, 234, 377, 596
BshNI	GGYRCC	1 cut(s)	414
BsiSI	CCGG	2 cut(s)	228, 435
BslI	CCNNNNNNNGG	2 cut(s)	394, 424
BsmAI	GTCTC	3 cut(s)	215, 596, 617
BsmBI	CGTCTC	1 cut(s)	596
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	3 cut(s)	352, 374, 646
BspACI	CCGC	2 cut(s)	298, 492
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	303, 416
BspMI	ACCTGC	1 cut(s)	206
BspOI	GCTAGC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	510
BssMI	GATC	3 cut(s)	352, 374, 646
BssNI	GRCGYC	1 cut(s)	605
Bst4CI	ACNGT	4 cut(s)	139, 397, 472, 561
Bst6I	CTCTTC	2 cut(s)	24, 307
BstACI	GRCGYC	1 cut(s)	605
BstAUI	TGTACA	1 cut(s)	510
BstC8I	GCNNGC	3 cut(s)	127, 296, 490
BstDEI	CTNAG	2 cut(s)	258, 482
BstF5I	GGATG	2 cut(s)	271, 549
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	355, 377, 649
BstMAI	GTCTC	3 cut(s)	215, 596, 617
BstMBI	GATC	3 cut(s)	352, 374, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstSCI	CCNGG	1 cut(s)	226
BstSFI	CTRYAG	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	109
BsuI	GTATCC	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	271, 549
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	3 cut(s)	127, 296, 490
CfoI	GCGC	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	473, 511
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	5 cut(s)	99, 262, 275, 339, 488
CviKI_1	RGCY	5 cut(s)	99, 262, 275, 339, 488
CviQI	GTAC	2 cut(s)	473, 511
DdeI	CTNAG	2 cut(s)	258, 482
DpnI	GATC	3 cut(s)	354, 376, 648
DpnII	GATC	3 cut(s)	352, 374, 646
DriI	GACNNNNNGTC	1 cut(s)	609
Eam1104I	CTCTTC	2 cut(s)	24, 307
Eam1105I	GACNNNNNGTC	1 cut(s)	609
EarI	CTCTTC	2 cut(s)	24, 307
Esp3I	CGTCTC	1 cut(s)	596
FaeI	CATG	1 cut(s)	83
FaiI	YATR	9 cut(s)	17, 19, 46, 81, 164, 222, 509, 515, 520
FatI	CATG	1 cut(s)	79
FauI	CCCGC	1 cut(s)	291
FbaI	TGATCA	1 cut(s)	646
FokI	GGATG	2 cut(s)	278, 536
FspBI	CTAG	2 cut(s)	306, 489
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	197
HapII	CCGG	2 cut(s)	228, 435
HhaI	GCGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	605
Hin1II	CATG	1 cut(s)	83
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	557
HindII	GTYRAC	1 cut(s)	557
HinfI	GANTC	5 cut(s)	113, 269, 329, 538, 587
HpaII	CCGG	2 cut(s)	228, 435
HphI	GGTGA	1 cut(s)	641
Hpy166II	GTNNAC	1 cut(s)	557
Hpy188I	TCNGA	5 cut(s)	259, 287, 543, 592, 617
Hpy188III	TCNNGA	4 cut(s)	132, 214, 333, 578
Hpy8I	GTNNAC	1 cut(s)	557
Hpy99I	CGWCG	3 cut(s)	58, 446, 596
HpyCH4III	ACNGT	4 cut(s)	139, 397, 472, 561
HpyCH4IV	ACGT	2 cut(s)	21, 605
HpyCH4V	TGCA	2 cut(s)	162, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	2 cut(s)	258, 482
HpySE526I	ACGT	2 cut(s)	21, 605
Hsp92I	GRCGYC	1 cut(s)	605
Hsp92II	CATG	1 cut(s)	83
HspAI	GCGC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	3 cut(s)	352, 374, 646
LmnI	GCTCC	3 cut(s)	53, 104, 344
LpnPI	CCDG	8 cut(s)	117, 211, 227, 241, 248, 318, 448, 563
LweI	GCATC	2 cut(s)	558, 631
MaeI	CTAG	2 cut(s)	306, 489
MaeII	ACGT	2 cut(s)	21, 605
MaeIII	GTNAC	2 cut(s)	277, 466
MalI	GATC	3 cut(s)	354, 376, 648
MboI	GATC	3 cut(s)	352, 374, 646
MboII	GAAGA	7 cut(s)	41, 98, 321, 324, 458, 632, 650
MluCI	AATT	4 cut(s)	41, 204, 364, 495
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	615
MseI	TTAA	1 cut(s)	670
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	228, 435
MspR9I	CCNGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	412
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	3 cut(s)	352, 374, 646
NheI	GCTAGC	1 cut(s)	488
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	2 cut(s)	303, 416
NsbI	TGCGCA	1 cut(s)	150
PfeI	GAWTC	4 cut(s)	113, 269, 329, 538
PleI	GAGTC	1 cut(s)	581
PpsI	GAGTC	1 cut(s)	581
PspN4I	GGNNCC	2 cut(s)	303, 416
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	2 cut(s)	474, 512
RsaNI	GTAC	2 cut(s)	473, 511
SaqAI	TTAA	1 cut(s)	670
Sau3AI	GATC	3 cut(s)	352, 374, 646
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	1 cut(s)	228
SfaNI	GCATC	2 cut(s)	558, 631
SfcI	CTRYAG	1 cut(s)	67
Sse9I	AATT	4 cut(s)	41, 204, 364, 495
SsiI	CCGC	2 cut(s)	298, 492
SspMI	CTAG	2 cut(s)	306, 489
StyD4I	CCNGG	1 cut(s)	226
TaaI	ACNGT	4 cut(s)	139, 397, 472, 561
TaiI	ACGT	2 cut(s)	24, 608
TaqI	TCGA	2 cut(s)	355, 373
TasI	AATT	4 cut(s)	41, 204, 364, 495
TatI	WGTACW	2 cut(s)	472, 510
TfiI	GAWTC	4 cut(s)	113, 269, 329, 538
Tru1I	TTAA	1 cut(s)	670
Tru9I	TTAA	1 cut(s)	670
TspDTI	ATGAA	2 cut(s)	237, 282
TspGWI	ACGGA	1 cut(s)	542
XapI	RAATTY	1 cut(s)	204
XspI	CTAG	2 cut(s)	306, 489
ZraI	GACGTC	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.