Rorug07G0346100

Protein of unknown function (DUF3675)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
38420817 .. 38422044
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0346100.1

Sequence Viewer

Length: 1044 bp
ATGGCGGCCTTCACCGTCCGAACACTCTCGCTCGTTCCGGTACTCCTCCTCCTCGCCGTCGTCTTCACTTTCCCGACGGGCACGGCGTCGGTCTCAACCCGCGAGTACGAGTGGATGCAGCGCGTGCTCCGCAACCACGGCTACAATCTGATCTGCAACGCCATGGCCACCTCTGACCTCCAGTACGAGCTCCTCACGCTCCCGCCCAACGCCTCCTTCACCGTCTTCGCTCCCACCGACGCCTCCCTCTTCGCGCTCGACATGATCCAAACGGCGTCGTATTACATCGACACCCTCCGCGTCCACGTCGTCCCTCTCCGCTTCTCTGTCTCCGACCTCCGATCTATCTCCTCCGGCTCCATCCTCCCCACGCTCCTCCCCTACAGAGCTCTCCGCCTCTCCACCGACCCCCTCGCCGTCTCCGGCGTCGACGTCGTTTTGCCCGGCCTTTTCTACTCTCGCCGCGTCGCCGTCCACGGCCTCGGAGGCATCGTCAGTCTCAGCTCTGTCGTTCCCTACGGTTCTCATCTTCAGGCCAGTGCTCCCGTGGCAAGCGGCGGCGCCGATAAGGTCGCGCCCTTGAAAACTGTGTCCAACCGCACAGATCTCTCTCCGGCGGCCACACCACAGTCTGAAGCCGTGTCGCTCATGAATGCTCATTCCAACGGGACGGCCAGCGCTGATCTTTCTCCGGTTGTAGCTGAGTCGCCGGTGACCACTGCATCTCCATCTCCGCCGACTGGAGTACACGATAACTCGACGGCTTCCGAAGATACTCCCTCGGCATCTCCAGTACCGTCACCGTCGGCCGATTCAGTACCGGAAAGAGCTAGGGCTTTGTTGATGGAGATTTCAGACTGCAATTCCGACTCCGAGGGTGATGAAATTTCCGAGAAATCGCCGCTGCTGATGGAAGCGCAAGCGGTTGGTGAGGTGAAGAAATGTGGAGCGTTGGATGAGATGACCATTGACTGCTTTGTGCCTGAAGACGGGGATGGACTAGAACAGCTCAGCCTTAAGCGGGTGGTTCGAGCTTTGGTTTAA

Protein Analysis

347

Amino Acids

36.56

Weight (kDa)

4.78

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 560
AccI GTMKAC 1 cut(s) 429
AccII CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
AclWI GGATC 1 cut(s) 259
AcoI YGGCCR 4 cut(s) 165, 618, 672, 807
AcsI RAATTY 1 cut(s) 885
AcuI CTGAAG 3 cut(s) 515, 654, 1005
AcyI GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
AfaI GTAC 6 cut(s) 42, 107, 185, 747, 795, 819
AfeI AGCGCT 1 cut(s) 679
AfiI CCNNNNNNNGG 3 cut(s) 740, 989, 1021
AflII CTTAAG 1 cut(s) 1016
AgsI TTSAA 1 cut(s) 583
AjiI CACGTC 1 cut(s) 307
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 7 cut(s) 190, 389, 504, 701, 830, 1009, 1034
AluI AGCT 7 cut(s) 190, 389, 504, 701, 830, 1009, 1034
Alw21I GWGCWC 4 cut(s) 129, 192, 391, 544
Alw26I GTCTC 4 cut(s) 97, 334, 424, 503
AlwI GGATC 1 cut(s) 259
Aor51HI AGCGCT 1 cut(s) 679
AoxI GGCC 8 cut(s) 6, 165, 445, 478, 534, 618, 672, 807
ApeKI GCWGC 2 cut(s) 118, 904
ApoI RAATTY 1 cut(s) 885
AspLEI GCGC 6 cut(s) 123, 256, 563, 577, 680, 919
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 7 cut(s) 4, 211, 724, 792, 890, 941, 946
BaeGI GKGCMC 1 cut(s) 83
BalI TGGCCA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 560
BanII GRGCYC 2 cut(s) 192, 391
BbsI GAAGAC 3 cut(s) 55, 217, 993
Bbv12I GWGCWC 4 cut(s) 129, 192, 391, 544
BbvI GCAGC 2 cut(s) 130, 891
BccI CCATC 5 cut(s) 368, 736, 838, 904, 989
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 4 cut(s) 97, 334, 424, 503
BfaI CTAG 2 cut(s) 831, 1001
BfmI CTRYAG 1 cut(s) 382
BfoI RGCGCY 2 cut(s) 564, 681
BfrI CTTAAG 1 cut(s) 1016
BglI GCCNNNNNGGC 1 cut(s) 486
BglII AGATCT 1 cut(s) 604
BisI GCNGC 8 cut(s) 6, 119, 463, 556, 559, 618, 902, 905
BlpI GCTNAGC 1 cut(s) 1010
BlsI GCNGC 8 cut(s) 7, 120, 464, 557, 560, 619, 903, 906
Bme1390I CCNGG 1 cut(s) 444
BmgBI CACGTC 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 358, 562
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 4 cut(s) 105, 498, 731, 794
BpiI GAAGAC 3 cut(s) 55, 217, 993
BpmI CTGGAG 3 cut(s) 164, 762, 774
Bpu1102I GCTNAGC 1 cut(s) 1010
BpuMI CCSGG 1 cut(s) 444
BsaHI GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 7 cut(s) 136, 162, 475, 481, 546, 780, 873
BsaWI WCCGGW 3 cut(s) 37, 691, 820
BsaXI ACNNNNNCTCC 6 cut(s) 33, 63, 477, 507, 709, 739
Bsc4I CCNNNNNNNGG 3 cut(s) 740, 989, 1021
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 4 cut(s) 181, 537, 745, 791
BseDI CCNNGG 7 cut(s) 136, 162, 475, 481, 546, 780, 873
BseGI GGATG 4 cut(s) 120, 360, 961, 1000
BseLI CCNNNNNNNGG 3 cut(s) 740, 989, 1021
BseMII CTCAG 3 cut(s) 514, 693, 1024
BseNI ACTGG 4 cut(s) 181, 537, 745, 791
BseRI GAGGAG 6 cut(s) 35, 38, 41, 182, 340, 365
BseSI GKGCMC 1 cut(s) 83
BseX3I CGGCCG 1 cut(s) 807
BseXI GCAGC 2 cut(s) 130, 891
Bsh1236I CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
Bsh1285I CGRYCG 1 cut(s) 810
BshFI GGCC 8 cut(s) 8, 167, 447, 480, 536, 620, 674, 809
BshNI GGYRCC 1 cut(s) 560
BsiEI CGRYCG 1 cut(s) 810
BsiHKAI GWGCWC 4 cut(s) 129, 192, 391, 544
BsiSI CCGG 8 cut(s) 38, 354, 423, 444, 614, 692, 710, 821
BslFI GGGAC 2 cut(s) 296, 682
BslI CCNNNNNNNGG 3 cut(s) 740, 989, 1021
BsmAI GTCTC 4 cut(s) 97, 334, 424, 503
BsmBI CGTCTC 1 cut(s) 424
BsmFI GGGAC 2 cut(s) 296, 682
BsmI GAATGC 1 cut(s) 658
BsnI GGCC 8 cut(s) 8, 167, 447, 480, 536, 620, 674, 809
Bso31I GGTCTC 1 cut(s) 97
Bsp1286I GDGCHC 5 cut(s) 83, 129, 192, 391, 544
Bsp143I GATC 5 cut(s) 150, 264, 341, 604, 682
Bsp1720I GCTNAGC 1 cut(s) 1010
Bsp19I CCATGG 1 cut(s) 162
BspANI GGCC 8 cut(s) 8, 167, 447, 480, 536, 620, 674, 809
BspCNI CTCAG 3 cut(s) 513, 694, 1023
BspFNI CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 2 cut(s) 358, 562
BspPI GGATC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 560
BspTI CTTAAG 1 cut(s) 1016
BspTNI GGTCTC 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 709
BsrI ACTGG 4 cut(s) 181, 537, 745, 791
BssAI RCCGGY 1 cut(s) 709
BssECI CCNNGG 7 cut(s) 136, 162, 475, 481, 546, 780, 873
BssMI GATC 5 cut(s) 150, 264, 341, 604, 682
BssNI GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 7 cut(s) 16, 223, 521, 589, 630, 798, 804
Bst6I CTCTTC 1 cut(s) 254
BstACI GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
BstAFI CTTAAG 1 cut(s) 1016
BstAPI GCANNNNNTGC 1 cut(s) 124
BstC8I GCNNGC 4 cut(s) 125, 553, 676, 921
BstDEI CTNAG 3 cut(s) 500, 702, 1010
BstDSI CCRYGG 4 cut(s) 136, 162, 475, 546
BstEII GGTNACC 1 cut(s) 712
BstF5I GGATG 4 cut(s) 120, 360, 961, 1000
BstFNI CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
BstH2I RGCGCY 2 cut(s) 564, 681
BstHHI GCGC 6 cut(s) 123, 256, 563, 577, 680, 919
BstKTI GATC 5 cut(s) 153, 267, 344, 607, 685
BstMAI GTCTC 4 cut(s) 97, 334, 424, 503
BstMBI GATC 5 cut(s) 150, 264, 341, 604, 682
BstMCI CGRYCG 1 cut(s) 810
BstMWI GCNNNNNNNGC 6 cut(s) 124, 129, 138, 196, 486, 548
BstPI GGTNACC 1 cut(s) 712
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 1 cut(s) 382
BstSLI GKGCMC 1 cut(s) 83
BstUI CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
BstV1I GCAGC 2 cut(s) 130, 891
BstV2I GAAGAC 3 cut(s) 55, 217, 993
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BstZI CGGCCG 1 cut(s) 807
BsuRI GGCC 8 cut(s) 8, 167, 447, 480, 536, 620, 674, 809
BtgI CCRYGG 4 cut(s) 136, 162, 475, 546
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 4 cut(s) 120, 360, 961, 1000
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 2 cut(s) 544, 717
Cac8I GCNNGC 4 cut(s) 125, 553, 676, 921
CciI TCATGA 1 cut(s) 648
CfoI GCGC 6 cut(s) 123, 256, 563, 577, 680, 919
Cfr10I RCCGGY 1 cut(s) 709
CseI GACGC 6 cut(s) 75, 248, 264, 289, 415, 454
Csp6I GTAC 6 cut(s) 41, 106, 184, 746, 794, 818
CviAII CATG 3 cut(s) 163, 262, 649
CviQI GTAC 6 cut(s) 41, 106, 184, 746, 794, 818
DdeI CTNAG 3 cut(s) 500, 702, 1010
DinI GGCGCC 1 cut(s) 562
DpnI GATC 5 cut(s) 152, 266, 343, 606, 684
DpnII GATC 5 cut(s) 150, 264, 341, 604, 682
EaeI YGGCCR 4 cut(s) 165, 618, 672, 807
EagI CGGCCG 1 cut(s) 807
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 2 cut(s) 383, 723
Ecl136II GAGCTC 2 cut(s) 190, 389
EclXI CGGCCG 1 cut(s) 807
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 2 cut(s) 192, 391
Eco31I GGTCTC 1 cut(s) 97
Eco47III AGCGCT 1 cut(s) 679
Eco52I CGGCCG 1 cut(s) 807
Eco53kI GAGCTC 2 cut(s) 190, 389
Eco57I CTGAAG 3 cut(s) 515, 654, 1005
Eco91I GGTNACC 1 cut(s) 712
EcoICRI GAGCTC 2 cut(s) 190, 389
EcoO65I GGTNACC 1 cut(s) 712
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 2 cut(s) 192, 391
EgeI GGCGCC 1 cut(s) 562
EheI GGCGCC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 3 cut(s) 166, 265, 652
FaiI YATR 3 cut(s) 164, 263, 650
FaqI GGGAC 2 cut(s) 296, 682
FatI CATG 3 cut(s) 162, 261, 648
FauI CCCGC 3 cut(s) 107, 210, 1014
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 8 cut(s) 6, 119, 463, 556, 559, 618, 902, 905
FokI GGATG 4 cut(s) 127, 347, 968, 1007
FriOI GRGCYC 2 cut(s) 192, 391
Fsp4HI GCNGC 8 cut(s) 6, 119, 463, 556, 559, 618, 902, 905
FspBI CTAG 2 cut(s) 831, 1001
GlaI GCGC 6 cut(s) 122, 255, 562, 576, 679, 918
GluI GCNGC 8 cut(s) 6, 119, 463, 556, 559, 618, 902, 905
GsuI CTGGAG 3 cut(s) 164, 762, 774
HaeII RGCGCY 2 cut(s) 564, 681
HaeIII GGCC 8 cut(s) 8, 167, 447, 480, 536, 620, 674, 809
HapII CCGG 8 cut(s) 38, 354, 423, 444, 614, 692, 710, 821
HgaI GACGC 6 cut(s) 75, 248, 264, 289, 415, 454
HhaI GCGC 6 cut(s) 123, 256, 563, 577, 680, 919
Hin1I GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
Hin1II CATG 3 cut(s) 166, 265, 652
Hin6I GCGC 6 cut(s) 121, 254, 561, 575, 678, 917
HinP1I GCGC 6 cut(s) 121, 254, 561, 575, 678, 917
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 3 cut(s) 704, 812, 869
HpaII CCGG 8 cut(s) 38, 354, 423, 444, 614, 692, 710, 821
HphI GGTGA 7 cut(s) 4, 211, 724, 792, 890, 941, 946
Hpy166II GTNNAC 4 cut(s) 304, 430, 475, 748
Hpy188III TCNNGA 2 cut(s) 73, 649
Hpy8I GTNNAC 4 cut(s) 304, 430, 475, 748
HpyAV CCTTC 2 cut(s) 19, 226
HpyCH4III ACNGT 7 cut(s) 16, 223, 521, 589, 630, 798, 804
HpyCH4IV ACGT 2 cut(s) 306, 432
HpyCH4V TGCA 4 cut(s) 118, 156, 722, 861
HpyF10VI GCNNNNNNNGC 6 cut(s) 124, 129, 138, 196, 486, 548
HpyF3I CTNAG 3 cut(s) 500, 702, 1010
HpySE526I ACGT 2 cut(s) 306, 432
Hsp92I GRCGYC 6 cut(s) 86, 240, 275, 426, 432, 561
Hsp92II CATG 3 cut(s) 166, 265, 652
HspAI GCGC 6 cut(s) 121, 254, 561, 575, 678, 917
KasI GGCGCC 1 cut(s) 560
Kzo9I GATC 5 cut(s) 150, 264, 341, 604, 682
LmnI GCTCC 8 cut(s) 132, 195, 204, 235, 362, 378, 547, 947
Lsp1109I GCAGC 2 cut(s) 130, 891
LweI GCATC 4 cut(s) 105, 498, 731, 794
MaeI CTAG 2 cut(s) 831, 1001
MaeII ACGT 2 cut(s) 306, 432
MaeIII GTNAC 2 cut(s) 712, 798
MalI GATC 5 cut(s) 152, 266, 343, 606, 684
MboI GATC 5 cut(s) 150, 264, 341, 604, 682
MboII GAAGA 7 cut(s) 55, 217, 241, 521, 782, 949, 998
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 5 cut(s) 83, 129, 192, 391, 544
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 2 cut(s) 862, 885
MluNI TGGCCA 1 cut(s) 167
Mly113I GGCGCC 1 cut(s) 561
MlyI GAGTC 2 cut(s) 713, 863
MmeI TCCRAC 5 cut(s) 357, 618, 687, 891, 933
Mox20I TGGCCA 1 cut(s) 167
MscI TGGCCA 1 cut(s) 167
MseI TTAA 2 cut(s) 1017, 1042
Msp20I TGGCCA 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 904
MspCI CTTAAG 1 cut(s) 1016
MspI CCGG 8 cut(s) 38, 354, 423, 444, 614, 692, 710, 821
MspR9I CCNGG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 658
MvnI CGCG 6 cut(s) 102, 123, 254, 300, 465, 575
MwoI GCNNNNNNNGC 6 cut(s) 124, 129, 138, 196, 486, 548
NarI GGCGCC 1 cut(s) 561
NciI CCSGG 1 cut(s) 444
NcoI CCATGG 1 cut(s) 162
NdeII GATC 5 cut(s) 150, 264, 341, 604, 682
NlaIII CATG 3 cut(s) 166, 265, 652
NlaIV GGNNCC 2 cut(s) 358, 562
NmeAIII GCCGAG 1 cut(s) 761
NmuCI GTSAC 2 cut(s) 712, 798
PagI TCATGA 1 cut(s) 648
PcsI WCGNNNNNNNCGW 3 cut(s) 83, 234, 489
PctI GAATGC 1 cut(s) 658
PfeI GAWTC 1 cut(s) 812
PkrI GCNGC 8 cut(s) 7, 120, 464, 557, 560, 619, 903, 906
PleI GAGTC 2 cut(s) 712, 863
PluTI GGCGCC 1 cut(s) 564
PpsI GAGTC 2 cut(s) 712, 863
Psp124BI GAGCTC 2 cut(s) 192, 391
PspEI GGTNACC 1 cut(s) 712
PspN4I GGNNCC 2 cut(s) 358, 562
PsuI RGATCY 1 cut(s) 604
RsaI GTAC 6 cut(s) 42, 107, 185, 747, 795, 819
RsaNI GTAC 6 cut(s) 41, 106, 184, 746, 794, 818
SacI GAGCTC 2 cut(s) 192, 391
SalI GTCGAC 1 cut(s) 428
SaqAI TTAA 2 cut(s) 1017, 1042
SatI GCNGC 8 cut(s) 6, 119, 463, 556, 559, 618, 902, 905
Sau3AI GATC 5 cut(s) 150, 264, 341, 604, 682
SchI GAGTC 2 cut(s) 713, 863
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 5 cut(s) 83, 129, 192, 391, 544
SfaNI GCATC 4 cut(s) 105, 498, 731, 794
SfcI CTRYAG 1 cut(s) 382
SfoI GGCGCC 1 cut(s) 562
SgrAI CRCCGGYG 1 cut(s) 709
SgrDI CGTCGACG 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 1016
SmoI CTYRAG 1 cut(s) 1016
Sse9I AATT 2 cut(s) 862, 885
SspDI GGCGCC 1 cut(s) 560
SspMI CTAG 2 cut(s) 831, 1001
SstI GAGCTC 2 cut(s) 192, 391
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 7 cut(s) 16, 223, 521, 589, 630, 798, 804
TaiI ACGT 2 cut(s) 309, 435
TaqI TCGA 5 cut(s) 258, 288, 429, 758, 1030
TaqII GACCGA 1 cut(s) 79
TasI AATT 2 cut(s) 862, 885
TatI WGTACW 1 cut(s) 745
TauI GCSGC 6 cut(s) 8, 465, 558, 561, 620, 904
TfiI GAWTC 1 cut(s) 812
Tru1I TTAA 2 cut(s) 1017, 1042
Tru9I TTAA 2 cut(s) 1017, 1042
TscAI CASTG 2 cut(s) 544, 724
TseFI GTSAC 2 cut(s) 712, 798
TseI GCWGC 2 cut(s) 118, 904
Tsp45I GTSAC 2 cut(s) 712, 798
TspDTI ATGAA 2 cut(s) 665, 897
TspRI CASTG 2 cut(s) 544, 724
Vha464I CTTAAG 1 cut(s) 1016
XapI RAATTY 1 cut(s) 885
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 2 cut(s) 831, 1001
ZraI GACGTC 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.